TCONS_00052558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052558
Unique NameTCONS_00052558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052558 ID=TCONS_00052558|Name=TCONS_00052558|organism=Clytia hemisphaerica|type=transcript|length=2833bp
caaaaaacactatttttgacgtcaatcagAGACTGTTGCATTGCCATTTA
CTCTTGAACTgtcaaacattcacaaaatagTATATCGAAAGCCGAACAAA
GATGGACGGACTGGTGGACTGTATTCTCATAAAAATACTTCAATGGCTTG
ACGTCCGACACTTGTGCATATGCGGCCAAGTTTGTCACGACTGGAGGCGA
GTAGCGTATGATAGTGAACTATGGGCAGATATTAATTTGTGTCCATTTCG
ATGGAAACTGGACGAACAAGCAATTGTACGATTAATACACACTCGATTTC
AACCACTGATGAGGAAATTGAATCTGACAAGTTTTTCATTGACACCCAAA
ATGTTCACCGAACTTCAAGTAAGATGTCCAAACCTGCAAAGTTTGATCTT
AGAGAACGTAAACTTCATCGGGTTTTCAGAAAGCTACAAAGATTCTTATA
ATTTCCCTGAAAGGTTGTTCCACTTGGACATTCGGTACTCATCAGGGGAT
CCAATAGCATATGAAATCATCACAGAAAACTTAACAACATTACACAGCAT
TGGTATCACCAACTCTCTTCTATCCAGCGTCAACAACATCAAAATCATTC
GAAACCTTCGCAATATTCGAGNtttatgtatttgcacttttgaggacggt
taAGTAAATGAAACGATTTAGAACAGGCTGTAGTTTCGACCCgtaaaatc
gaggacggtaaaagtgctgattaccgtcgtcctcagtcagtcaggatgta
gacaaatcAGAACCTTACCGTCTTCGTCGCAGAAAAACATAGCTACGTAA
ACTCGGTAGTGATTAGACAACATTTCACCAACCTGAGAACCGTGCATGCA
TGGAACTCATTCaaaaacactatttttgacgtcaatcagAGACTGTTGCA
TTGCCATTTACTCTTGAACTgtcaaacattcacaaaatagTATATCGAAA
GCCGAACAAAGATGGACGGACTGGTGGACTGTATTCTCATAAAAATACTT
CAATGGCTTGACGTCCGACACTTGTGCATATGCAGCCAAGTTTGTCACGA
CTGGAGGCGAGTAGCGTATGATAGTGAACTATGGGCAGATATTAATTTGT
GTCCATTTCGATGGAAACTGGACGAACAAGCAATTGTACGATTAATACAC
ACTCGATTTCAACCACTGATGAGGAAATTGAATCTGACAAGTTTTTCATT
GACACCCAAAATGTTCACCGAACTTCAAGTAAGATGTCCAAACCTGCAAA
GTTTGATCTTAGAGAACGTAAACTTCATCGGGTTTTCAGAAAGCTACAAA
GATTCTTATAATTTCCCTGAAAGGTTGTTCCACTTGGACATTCGGTACTC
ATCAGGGGATCCAATAGCATATGAAATCATCACAGAAAACTTAACAACAT
TACACAGCATTGGTATCACCAACTCTCTTCTATCCAGCGTCAACAACATC
AAAATCATTCGAAACCTTCGCAATATTCGAGTACTAGATTTCAGCCATTG
CAATTCACTGAATGACGCAACGTTGGTTCTTCTCGGTACTTTTTGCACCA
AACTAACCTCTCTTTCATTAAATCACTGCAACAACGTTCGAGGAAACGAT
TTATCATTCATCATCGAGCACTGCCCCTTGTTAAAAGCTCTCTGCTTCAA
CGGCACTTCGCTAGATGATACAAGCTTATTGAGATGCAACTGGGGGAATA
TTGCTTTAGAAGAGCTCGACATATCATGGTGTAGGAACATAACAGAACGA
GGCCTCATACAAGTGTTACCGTGTTTGAAGAATCTTGAATATTTGAGATT
GTGTTCGTGCGGCTTTGGTCATGCAATCACGGATAATGTTTTACAAGTCC
TAACTGGACACCAGAAACTACAATTTGTAGATGTAAGTTACAGTCGTGAA
ATAACTGACGAAGGAGTTTCCAAAGCCATTTCAACGCTACCGTCATTAAA
GCAGATTCGAATCAATTCTTGTCGCAAACTCAGCCCTAGACTCTTTAACA
TGATCACAGCAAATGACAAAGTACTTGTTATACCTTCTTTTGTGAATACT
GGAGATGATAGTTTCCAGGCTGGTGGAAATAGCCTATTTGCTGCAAGTAG
ACTGATGGTTTCCATAACTCAGCCATGTTCTGAGCTGAGGAAATACACAT
TGGACAACATGCTTCAAAAACCACTGAGAAATCGCTGAGAGACATGACAT
GATAGCAATTTCGAAATTGTGTACAATGTAACGCGACTATGAATTCCAAT
TACTACGTCTCAAACGACATTCCTAAGCAAACTCAAGTTAAGCTGAACTG
AAATTGTGAAGTTAGGGTCATATTACGTATAAAGATGAGATTGGTTGTCA
AAATGAACAAGAAAATGTTTCGCAGACGACAGTGCATTTTTTGGACATCA
ATTAACattattcacaaaaatatttctttatccAAAAAATATGACTTTTG
CTGAGAGTTTGCACAGCAGCCGGTCCGAAAATTGCAACAAGTTTAACGTT
CGCTCATTCGAACGTTTATACAAATGTCCGTATACTCCTGTCAGAGAGTT
AGTTTACTGCATTATATCAGTTAACACAGTGTTCTTCAATCCGAATAATT
AGTTCTAATGTCAACCCAGGGTTAGTCGAAGAGGGTATACCAACTCATAC
TACAAGTAAAGCTCTACTCAGATTTTTGGTCAACGCCAAATTCAAAAGCT
GGATACGgtcgttttcttcttcttcgatCACCtacaaattgaattttttt
aaatgaagtaATTAATTATTGTTTGCATATATTGTCCTACCATCTTGGAA
ACATATGCAAATTTATGCCAATTTTTATGACCT
Run BLAST on NCBI

protein sequence of TCONS_00052558-protein

>TCONS_00052558-protein ID=TCONS_00052558-protein|Name=TCONS_00052558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
MDGLVDCILIKILQWLDVRHLCICSQVCHDWRRVAYDSELWADINLCPFR
WKLDEQAIVRLIHTRFQPLMRKLNLTSFSLTPKMFTELQVRCPNLQSLIL
ENVNFIGFSESYKDSYNFPERLFHLDIRYSSGDPIAYEIITENLTTLHSI
GITNSLLSSVNNIKIIRNLRNIRVLDFSHCNSLNDATLVLLGTFCTKLTS
LSLNHCNNVRGNDLSFIIEHCPLLKALCFNGTSLDDTSLLRCNWGNIALE
ELDISWCRNITERGLIQVLPCLKNLEYLRLCSCGFGHAITDNVLQVLTGH
QKLQFVDVSYSREITDEGVSKAISTLPSLKQIRINSCRKLSPRLFNMITA
NDKVLVIPSFVNTGDDSFQAGGNSLFAASRLMVSITQPCSELRKYTLDNM
LQKPLRNR
Run BLAST on NCBI

transcript from alignment at scaffold_218:155714..158820+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052558 ID=TCONS_00052558|Name=TCONS_00052558|organism=Clytia hemisphaerica|type=transcript|length=3107bp|location=Sequence derived from alignment at scaffold_218:155714..158820+ (Clytia hemisphaerica)
caaaaaacactatttttgacgtcaatcagAGACTGTTGCATTGCCATTTA
CTCTTGAACTgtcaaacattcacaaaatagTATATCGAAAGCCGAACAAA
GATGGACGGACTGGTGGACTGTATTCTCATAAAAATACTTCAATGGCTTG
ACGTCCGACACTTGTGCATATGCGGCCAAGTTTGTCACGACTGGAGGCGA
GTAGCGTATGATAGTGAACTATGGGCAGATATTAATTTGTGTCCATTTCG
ATGGAAACTGGACGAACAAGCAATTGTACGATTAATACACACTCGATTTC
AACCACTGATGAGGAAATTGAATCTGACAAGTTTTTCATTGACACCCAAA
ATGTTCACCGAACTTCAAGTAAGATGTCCAAACCTGCAAAGTTTGATCTT
AGAGAACGTAAACTTCATCGGGTTTTCAGAAAGCTACAAAGATTCTTATA
ATTTCCCTGAAAGGTTGTTCCACTTGGACATTCGGTACTCATCAGGGGAT
CCAATAGCATATGAAATCATCACAGAAAACTTAACAACATTACACAGCAT
TGGTATCACCAACTCTCTTCTATCCAGCGTCAACAACATCAAAATCATTC
GAAACCTTCGCAATATTCGAGNtttatgtatttgcacttttgaggacggt
taAGTAAATGAAACGATTTAGAACAGGCTGTAGTTTCGACCCgtaaaatc
gaggacggtaaaagtgctgattaccgtcgtcctcagtcagtcaggatgta
gacaaatcAGAACCTTACCGTCTTCGTCGCAGAAAAACATAGCTACGTAA
ACTCGGTAGTGATTAGACAACATTTCACCAACCTGAGAACCGTGCATGCA
TGGAACTCATTCaaaaacactatttttgacgtcaatcagAGACTGTTGCA
TTGCCATTTACTCTTGAACTgtcaaacattcacaaaatagTATATCGAAA
GCCGAACAAAGATGGACGGACTGGTGGACTGTATTCTCATAAAAATACTT
CAATGGCTTGACGTCCGACACTTGTGCATATGCAGCCAAGTTTGTCACGA
CTGGAGGCGAGTAGCGTATGATAGTGAACTATGGGCAGATATTAATTTGT
GTCCATTTCGATGGAAACTGGACGAACAAGCAATTGTACGATTAATACAC
ACTCGATTTCAACCACTGATGAGGAAATTGAATCTGACAAGTTTTTCATT
GACACCCAAAATGTTCACCGAACTTCAAGTAAGATGTCCAAACCTGCAAA
GTTTGATCTTAGAGAACGTAAACTTCATCGGGTTTTCAGAAAGCTACAAA
GATTCTTATAATTTCCCTGAAAGGTTGTTCCACTTGGACATTCGGTACTC
ATCAGGGGATCCAATAGCATATGAAATCATCACAGAAAACTTAACAACAT
TACACAGCATTGGTATCACCAACTCTCTTCTATCCAGCGTCAACAACATC
AAAATCATTCGAAACCTTCGCAATATTCGAGTACTAGATTTCAGCCATTG
CAATTCACTGAATGACGCAACGTTGGTTCTTCTCGGTACTTTTTGCACCA
AACTAACCTCTCTTTCATTAAATCACTGCAACAACGTTCGAGGAAACGAT
TTATCATTCATCATCGAGCACTGCCCCTTGTTAAAAGCTCTCTGCTTCAA
CGGCACTTCGCTAGATGATACAAGCTTATTGAGATGCAACTGGGGGAATA
TTGCTTTAGAAGAGCTCGACATATCATGGTGTAGGAACATAACAGAACGA
GGCCTCATACAAGTGTTACCGTGTTTGAAGAATCTTGAATATTTGAGATT
GTGTTCGTGCGGCTTTGGTCATGCAATCACGGATAATGTTTTACAAGTCC
TAACTGGACACCAGAAACTACAATTTGTAGATGTAAGGTAAGCGAACAGA
ACGGAATATTTCATACATTTCAGTGATAATTTTCCGTAAAAATTGCCGTA
GTGGGCACTTGGCTttcgactttttatttttatctgtttGAGGTCCGATT
CTAGCTTCGGTGAAAGGAAATGCACCATCCTCACAAGTGTACAAATTTTC
AACCAAGTCCAACCATCTTTTGAATCAAGCTACCCCGGATAAGCAATACG
GTTTTCTATAACAACTATAGAATGCAATCTAAAGAGCAAAGCTTCCTTTT
TTCATTCATAGTTACAGTCGTGAAATAACTGACGAAGGAGTTTCCAAAGC
CATTTCAACGCTACCGTCATTAAAGCAGATTCGAATCAATTCTTGTCGCA
AACTCAGCCCTAGACTCTTTAACATGATCACAGCAAATGACAAAGTACTT
GTTATACCTTCTTTTGTGAATACTGGAGATGATAGTTTCCAGGCTGGTGG
AAATAGCCTATTTGCTGCAAGTAGACTGATGGTTTCCATAACTCAGCCAT
GTTCTGAGCTGAGGAAATACACATTGGACAACATGCTTCAAAAACCACTG
AGAAATCGCTGAGAGACATGACATGATAGCAATTTCGAAATTGTGTACAA
TGTAACGCGACTATGAATTCCAATTACTACGTCTCAAACGACATTCCTAA
GCAAACTCAAGTTAAGCTGAACTGAAATTGTGAAGTTAGGGTCATATTAC
GTATAAAGATGAGATTGGTTGTCAAAATGAACAAGAAAATGTTTCGCAGA
CGACAGTGCATTTTTTGGACATCAATTAACattattcacaaaaatatttc
tttatccAAAAAATATGACTTTTGCTGAGAGTTTGCACAGCAGCCGGTCC
GAAAATTGCAACAAGTTTAACGTTCGCTCATTCGAACGTTTATACAAATG
TCCGTATACTCCTGTCAGAGAGTTAGTTTACTGCATTATATCAGTTAACA
CAGTGTTCTTCAATCCGAATAATTAGTTCTAATGTCAACCCAGGGTTAGT
CGAAGAGGGTATACCAACTCATACTACAAGTAAAGCTCTACTCAGATTTT
TGGTCAACGCCAAATTCAAAAGCTGGATACGgtcgttttcttcttcttcg
atCACCtacaaattgaatttttttaaatgaagtaATTAATTATTGTTTGC
ATATATTGTCCTACCATCTTGGAAACATATGCAAATTTATGCCAATTTTT
ATGACCT

Coding sequence (CDS) from alignment at scaffold_218:155714..158820+

>TCONS_00052558 ID=TCONS_00052558|Name=TCONS_00052558|organism=Clytia hemisphaerica|type=CDS|length=2454bp|location=Sequence derived from alignment at scaffold_218:155714..158820+ (Clytia hemisphaerica)
ATGGACGGACTGGTGGACTGTATTCTCATAAAAATACTTCAATGGCTTGA
CGTCCGACACTTGTGCATATGCAGCCAAGTTTGTCACGACTGGAGGCGAG
TAGCGTATGATAGTGAACTATGGGCAGATATTAATTTGTGTCCATTTCGA
TGGAAACTGGACGAACAAGCAATTGTACGATTAATACACACTCGATTTCA
ACCACTGATGAGGAAATTGAATCTGACAAGTTTTTCATTGACACCCAAAA
TGTTCACCGAACTTCAAGTAAGATGTCCAAACCTGCAAAGTTTGATCTTA
GAGAACGTAAACTTCATCGGGTTTTCAGAAAGCTACAAAGATTCTTATAA
TTTCCCTGAAAGGTTGTTCCACTTGGACATTCGGTACTCATCAGGGGATC
CAATAGCATATGAAATCATCACAGAAAACTTAACAACATTACACAGCATT
GGTATCACCAACTCTCTTCTATCCAGCGTCAACAACATCAAAATCATTCG
AAACCTTCGCAATATTCGAGTACTAGATTTCAGCCATTGCAATTCACTGA
ATGACGCAACGTTGGTTCTTCTCGGTACTTTTTGCACCAAACTAACCTCT
CTTTCATTAAATCACTGCAACAACGTTCGAGGAAACGATTTATCATTCAT
CATCGAGCACTGCCCCTTGTTAAAAGCTCTCTGCTTCAACGGCACTTCGC
TAGATGATACAAGCTTATTGAGATGCAACTGGGGGAATATTGCTTTAGAA
GAGCTCGACATATCATGGTGTAGGAACATAACAGAACGAGGCCTCATACA
AGTGTTACCGTGTTTGAAGAATCTTGAATATTTGAGATTGTGTTCGTGCG
GCTTTGGTCATGCAATCACGGATAATGTTTTACAAGTCCTAACTGGACAC
CAGAAACTACAATTTGTAGATGTAAGTTACAGTCGTGAAATAACTGACGA
AGGAGTTTCCAAAGCCATTTCAACGCTACCGTCATTAAAGCAGATTCGAA
TCAATTCTTGTCGCAAACTCAGCCCTAGACTCTTTAACATGATCACAGCA
AATGACAAAGTACTTGTTATACCTTCTTTTGTGAATACTGGAGATGATAG
TTTCCAGGCTGGTGGAAATAGCCTATTTGCTGCAAGTAGACTGATGGTTT
CCATAACTCAGCCATGTTCTGAGCTGAGGAAATACACATTGGACAACATG
CTTCAAAAACCACTGAGAAATCGCTGAATGGACGGACTGGTGGACTGTAT
TCTCATAAAAATACTTCAATGGCTTGACGTCCGACACTTGTGCATATGCA
GCCAAGTTTGTCACGACTGGAGGCGAGTAGCGTATGATAGTGAACTATGG
GCAGATATTAATTTGTGTCCATTTCGATGGAAACTGGACGAACAAGCAAT
TGTACGATTAATACACACTCGATTTCAACCACTGATGAGGAAATTGAATC
TGACAAGTTTTTCATTGACACCCAAAATGTTCACCGAACTTCAAGTAAGA
TGTCCAAACCTGCAAAGTTTGATCTTAGAGAACGTAAACTTCATCGGGTT
TTCAGAAAGCTACAAAGATTCTTATAATTTCCCTGAAAGGTTGTTCCACT
TGGACATTCGGTACTCATCAGGGGATCCAATAGCATATGAAATCATCACA
GAAAACTTAACAACATTACACAGCATTGGTATCACCAACTCTCTTCTATC
CAGCGTCAACAACATCAAAATCATTCGAAACCTTCGCAATATTCGAGTAC
TAGATTTCAGCCATTGCAATTCACTGAATGACGCAACGTTGGTTCTTCTC
GGTACTTTTTGCACCAAACTAACCTCTCTTTCATTAAATCACTGCAACAA
CGTTCGAGGAAACGATTTATCATTCATCATCGAGCACTGCCCCTTGTTAA
AAGCTCTCTGCTTCAACGGCACTTCGCTAGATGATACAAGCTTATTGAGA
TGCAACTGGGGGAATATTGCTTTAGAAGAGCTCGACATATCATGGTGTAG
GAACATAACAGAACGAGGCCTCATACAAGTGTTACCGTGTTTGAAGAATC
TTGAATATTTGAGATTGTGTTCGTGCGGCTTTGGTCATGCAATCACGGAT
AATGTTTTACAAGTCCTAACTGGACACCAGAAACTACAATTTGTAGATGT
AAGTTACAGTCGTGAAATAACTGACGAAGGAGTTTCCAAAGCCATTTCAA
CGCTACCGTCATTAAAGCAGATTCGAATCAATTCTTGTCGCAAACTCAGC
CCTAGACTCTTTAACATGATCACAGCAAATGACAAAGTACTTGTTATACC
TTCTTTTGTGAATACTGGAGATGATAGTTTCCAGGCTGGTGGAAATAGCC
TATTTGCTGCAAGTAGACTGATGGTTTCCATAACTCAGCCATGTTCTGAG
CTGAGGAAATACACATTGGACAACATGCTTCAAAAACCACTGAGAAATCG
CTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033238XLOC_033238Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052558-proteinTCONS_00052558-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052558-exon-scaffold_218-1491911889:155714..157600TCONS_00052558-exon-scaffold_218-1491911889:155714..157600Clytia hemisphaericaexon
TCONS_00052558-exon-scaffold_218-1510915933:155714..157600TCONS_00052558-exon-scaffold_218-1510915933:155714..157600Clytia hemisphaericaexon
TCONS_00052558-exon-scaffold_218-1575043694:155714..157600TCONS_00052558-exon-scaffold_218-1575043694:155714..157600Clytia hemisphaericaexon
TCONS_00052558-exon-scaffold_218-1491911889:157875..158820TCONS_00052558-exon-scaffold_218-1491911889:157875..158820Clytia hemisphaericaexon
TCONS_00052558-exon-scaffold_218-1510915933:157875..158820TCONS_00052558-exon-scaffold_218-1510915933:157875..158820Clytia hemisphaericaexon
TCONS_00052558-exon-scaffold_218-1575043694:157875..158820TCONS_00052558-exon-scaffold_218-1575043694:157875..158820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:155714..158820 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.011421	0	0	0	0	0	0	0	0	0	0	0	0	8.90169	1.04137	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top