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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053151 ID=TCONS_00053151|Name=TCONS_00053151|organism=Clytia hemisphaerica|type=transcript|length=2723bpRun BLAST on NCBI protein sequence of TCONS_00053151-protein >TCONS_00053151-protein ID=TCONS_00053151-protein|Name=TCONS_00053151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp WEVVIFSIVFDGKWLKNKRCNSKQAIMGKIKTEKRAARKGLSEELLNNSSRun BLAST on NCBI transcript from alignment at scaffold_226:422111..463583+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053151 ID=TCONS_00053151|Name=TCONS_00053151|organism=Clytia hemisphaerica|type=transcript|length=41473bp|location=Sequence derived from alignment at scaffold_226:422111..463583+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_226:422111..463583+ >TCONS_00053151 ID=TCONS_00053151|Name=TCONS_00053151|organism=Clytia hemisphaerica|type=CDS|length=21015bp|location=Sequence derived from alignment at scaffold_226:422111..463583+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00053151 vs. Swiss-Prot (Human)
Match: BYST (Bystin OS=Homo sapiens GN=BYSL PE=1 SV=3) HSP 1 Score: 458.759 bits (1179), Expect = 8.333e-152 Identity = 233/423 (55.08%), Postives = 312/423 (73.76%), Query Frame = 2
Query: 122 LSEELLNNSSEVKLKNRPGREKTHRKDDEDKFVDDKLSKKILEQARAQQDELEEEHGSSSK-------KTRKGYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYYEHFEVDEGDEKAMASFMSEKPQDRRTLADIIMERINEKKTEIQSQVSEAP--ERPPLDEKIVSVFKSVGEVLSKYRSGKIPKPFKIIPSLANWEEVLYCTDPDTWTPAAMYQATRIFTSNLNAKMAQRFFNLVLLPRVRDDIAEYRRLNYHLYMSLKKSLFKPAAFFKGILIPLCESGTCTLREATIVASVLIKTSVPVLHSAATMLKIAEMQYNGANSIFLQALLEKKYALPFRVIDALVYHFLKFQSDQRDLPVLWYKSLLLFVQRYKEDIASEQKDALMELSRKHNHYKITPEIRRELTSSKSRDEED 1363
L++++L ++ V+ R R + E+++V +LS++IL+QAR QQ+ELE EHG+ K TR G + DD D E E+ A ++ VD DE+A+ FM++ P RRTLADIIME++ EK+TE+++ +SE P LD +++ V++ V EVLSKYRSGK+PK FKIIP+L+NWE++LY T+P+ WT AAMYQATRIF SNL +MAQRF+NLVLLPRVRDD+AEY+RLN+HLYM+LKK+LFKP A+FKGILIPLCESGTCTLREA IV S++ K S+PVLHS+A MLKIAEM+Y+GANSIFL+ LL+KKYALP+RV+DALV+HFL F++++R+LPVLW++ LL VQRYK D+A++QK+AL+EL R H +++PEIRREL S+ RD ED
Sbjct: 19 LADQILAGNA-VRAGVREKRRGRGTGEAEEEYVGPRLSRRILQQARQQQEELEAEHGTGDKPAAPRERTTRLG---------PRMPQDGSDDEDEEWPTLEKAATMTAAGHHAEVVVDPEDERAIEMFMNKNPPARRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRVLEVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILYVTEPEAWTAAAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDVAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLLLDKKYALPYRVLDALVFHFLGFRTEKRELPVLWHQCLLTLVQRYKADLATDQKEALLELLRLQPHPQLSPEIRRELQSAVPRDVED 431 The following BLAST results are available for this feature:
BLAST of TCONS_00053151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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