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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053156 ID=TCONS_00053156|Name=TCONS_00053156|organism=Clytia hemisphaerica|type=transcript|length=1902bp
CATTCGCACGTTTAACGTGCAAATAAAAGCAATGCTTGCAAGAATAAACa
tatttgtgaaattttttatttttttccatcctcaaATATAAAGAATTGAA
GTTGAAGATGAAACATTCTGTTTGAATCAATCAACCGTAAAATGTTTGGA
ATGTATATCAAAAGCctacacacaacgttgtttcaacgttcatctaacgt
gatatggacgttacgaacgttagatgaacattgCTGTAACGTTGTGTGTT
GGCTGTATAACGTTTGATCTTCTGTTATATAATTGATAAAAGTTTtagat
tttcttcaaaaatcaagacATCGCATTAAATTGTCAGTTTAGATCAAGAT
GGGACGTAGAGGGGCTTCCGCAGCCTACCTCCTGTCTTTACTGACGGTTG
CTTTCTGTGATCCATACGAATTTTCCGACTGCTTCCCACCAGCAAATGGT
GATACAGAAACTACATTTAGTTTTTCGACCACGAAATTATCAGAGAAAGA
CCCGACAGAGTTTACTGCTTATCAGGGCAAAGTTATGCTGATTATCAACG
TTGCATCTTTCTGAGGTTACACCCCTCAGTACCGTTACATGAatgaatta
caaaaaaaatacgGTAATCGTACCGGTCAATGCAATCTCCAACTATTCGG
TTTCCCATGTAACCAATTCGGATATCAGGAGCCTGCAGAGAACGATGAGC
TGTTGAATTGTATCAAGTATGTTCGACCAGGGTTTGGCTATGAACCTTTG
TTTCCATTGGCCAAGAAAGGCGATGTCAATGGCATGTATGAACATCCTAT
CTATACTTTCCTCAAGACTCGTTGTCCCGCTCCTATGGGTTTGATTGCAA
ACCGAACAGACATCACATGGCAACCAATCAGAAACAATGATATCTCATGG
AATTTCCAAAAATGGCTGATCAAACATGATGGCCAGCCTTTCAAGAGATA
TACATCACGTACTACTCCACAAGCAATTGAAAATGACATAGTCATGCTCT
TGGATGATTGTACAGCTGCCACTAAACAATCACAACAAAGTCAAGATAAT
GCAGTTCCACAGGCTGCTCAACCTCAATCACCACAGGCTAATGCTGTTCC
ACAACAACAATCACCACAGGCTAATGCATATCCTCAAAAACCACAGGCTA
ATGATGTTCCACAGCGACCAGCAACCGCAGGTGCACAACCACAAGCACAA
ACTGTAGCCTTTGAACACTCCCCACAACAGCCATCATCCGATAGCGTCGC
CCTCGAAACACAACCTAAACCAAATGCGTTTGTGCAACCACCTGCACCTG
TTAATCAAACACAACCGCAGCCAGCAGCGAGTGGACGCAAGAGGAGATCA
CTACTTCCGCGCCGCCACTAAAAAATTTCACGAAAATAATACAATACAAA
AAACTATATCTTTCGGTTAGTTTAAAGCTTGGAATCTTGCCACCGCAGTG
TCATCAACTTGTTTTGGGCTAACCTCACATACAAAGATATATcgaaaaag
aatacaaaatttacattaaaacacatgggataaaaaaattataaaatgaa
gGATGGGGGCATTACAATTGCCTACAACTTCGAATTTGTTGAACACTTCG
CACCAGATGGCACAGTTTTTATGAAGATCTATATCGCAAATTGGTTTTGC
AACGTTCCAATAGATGTGGATTTGATAGAGTTGATCGTTTCACTGGATTT
GATAAAGAGATCAGTTCTTTTGTAATTTATTCAGTCTTTTATANaccgct
gtataatttaccgccttatttttgcggaacacttaattggccggaaatca
aattacaaacaaacaaacgcaaagattcgagattccagtccaatatttat
gcgtgaagctatgagtgcctcctcgtcgctgcgctcctgcgggggcaaaa
aa Run BLAST on NCBI protein sequence of TCONS_00053156-protein >TCONS_00053156-protein ID=TCONS_00053156-protein|Name=TCONS_00053156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MNELQKKYGNRTGQCNLQLFGFPCNQFGYQEPAENDELLNCIKYVRPGFG
YEPLFPLAKKGDVNGMYEHPIYTFLKTRCPAPMGLIANRTDITWQPIRNN
DISWNFQKWLIKHDGQPFKRYTSRTTPQAIENDIVMLLDDCTAATKQSQQ
SQDNAVPQAAQPQSPQANAVPQQQSPQANAYPQKPQANDVPQRPATAGAQ
PQAQTVAFEHSPQQPSSDSVALETQPKPNAFVQPPAPVNQTQPQPAASGR
KRRSLLPRRH Run BLAST on NCBI transcript from alignment at scaffold_226:479540..488302+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053156 ID=TCONS_00053156|Name=TCONS_00053156|organism=Clytia hemisphaerica|type=transcript|length=8763bp|location=Sequence derived from alignment at scaffold_226:479540..488302+ (Clytia hemisphaerica)
CATTCGCACGTTTAACGTGCAAATAAAAGCAATGCTTGCAAGAATAAACa
tatttgtgaaattttttatttttttccatcctcaaATATAAAGAATTGAA
GTTGAAGATGAAACATTCTGTTTGAATCAATCAACCGTAAAATGTTTGGA
ATGTATATCAAAAGCctacacacaacgttgtttcaacgttcatctaacgt
gatatggacgttacgaacgttagatgaacattgCTGTAACGTTGTGTGTT
GGCTGTATAACGTTTGATCTTCTGTTATATAATTGATAAAAGTTTtagat
tttcttcaaaaatcaagacATCGCATTAAATTGTCAGTTTAGATCAAGAT
GGGACGTAGAGGGGCTTCCGCAGCCTACCTCCTGTCTTTACTGACGGTTG
CTTTCTGTGATCCATACGAATTTTCCGACTGCTTCCCACCAGCAAATGGT
GATACAGAAACTACATTTAGTTTTTCGACCACGAAATTATCAGAGAAAGA
CCCGACAGAGTTTACTGCTTATCAGGGCAAAGTTATGCTGATTATCAACG
TTGCATCTTTCTGAGGGTGAGTAGTGAGTTTATACTTTAATCCGAATTTT
GTACTTTCGCGTTGCTAAATTTTCTAGAGCCCCGATGATAAGTGAAACTT
TATGGATTTGATTTTACACGTCAGCgttttgaaaatcatttaatCTCGTG
AAAGTGAGTCTATTAGGttatttctttttaatgatttcttaTCACAAGAT
TCACATACAGTAGAGCCTCTAATAGACggtcctatcgtctacacaaggtc
actaaaaaagggaatagtttaggaggcgTGATAAGTTCtggcggagtaag
cagtggctGAGGTGTTTACAGTACAGTTTGTTCCAAACTCAAACGCCACT
TTTTTTTCTCGTAAACCGGCCTGACGCTCTGACTACGCGCTTATATATTT
TCCCGTGTTCGCTGACCCTCtaaaacggacgatagcatcgtctaagtctc
taaaataaactttttacaacaaaacttttttaactCGTTTGAGTTATGTG
ATCTCTTCTCTATTAGTAATTTCAGTCGGAACCTTTTGACATTACTCTTG
AGGCAGAAATGTCTGTCAGAAAGATATCATTACACATTAGTAAACCGCTT
TTGACAGACATTTTTGAGTAGATTCGATTCGTAAacatttttggtgaaaa
ttaatccactcaaAATTATCCTTCCCACAGGTTACTTTTAATGCATCTAA
AAATATGCTAATTGGTAATTCTTTCTAGAGCAGACTTTAATTAACTAAAA
AAATGTGATGCTTTCAGGCTGGCTACTAACTGATGTCAAAAAAAATGAGG
CTGAGCTTAAAACTACATTTATTAGAAAGACTTAAACTTTAGTCGAGTAG
TTGCCAAGCCCGGGGCAAAAGGTTTGCGAAATGACAGGGTGCCGCCCAAC
TTTCGAAAAATCGGAAATTTAGGGTTTAGAATCAAggaaaaaaaccaaaa
ttttgtgaattttggtACCCTTACCGGGAGCTTTTTCCTAAAATTTAGCC
TTTTATCGGAAAAATATTGGAGTTGTTGGTTTTCTGTATGTAACCCTAAG
CGGGGTGCTGAAATTAGATATGGTGATTTTTACGGCCTTAGAGGGACTTT
GAAGGTCCATAAAGGCACCCTTAAGAGTGGCACAGACCTGTACCCtctat
ttgcctaagtaccccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtacagtgatagtaaaggcgggaaaata
aaATACGCGCGGGGTTTACAGCCGTTATGGGGGTAAACGTAAATTAAAAA
TCGGCtgtagagtttcgaagaaagacTGGCAAACTGTACCCGCTGTAAAC
TCTGCGTTTATGAATTtccttcggctttgggctttttttgGTGATTCGTA
GACTatgtacagtatatggcccccgaaaacggaggttttcattaaaatga
agattctgacttgcagatttatcagaattaaatgatttttgtttattttg
aaaggatGATgcttatacttaaaaatgagcatgtttttgctggtttgaga
cagattcaaactaacatatttgcgtctaaaggaaatattttaacaccaaa
attagataaaaattgcatataactcactctagctccttggatattgaaaa
taagttatgaaaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNatttcaaaactatggtcaaagttttgtattcatatcttaaa
gatatctcgagaaatcgctaaaatttcaaacctccgttttgggggccatt
agaaaaaatctttaagcgattgaaaaatattgttaaaattaaaaattttg
aaaaataacttccaggaaataaagtagagatgttaaaggttttcatgcag
caaaaatttttgtaaaatctcttttcctctagatttgagagaaatttcaa
atttgatcaccgttttgggggccacatactgtatagCACAAGTCTAGAAA
ATTTCTTgCTTTTCTTTTTAGTTACACCCCTCAGTACCGTTACATGAatg
aattacaaaaaaaatacgGTAATCGTACCGGTCAATGCAATCTCCAACTA
TTCGGTTTCCCATGTAACCAATTCGGATATCAGGTAAGATCACGTGACTT
TTATTGAGGTGTTCCATATTTTGTTAATCATCTTGGACATTGAATATCTA
TCAATTACAAAGAGAATTGTAATAATTGAGTTATTGTAATTTTACTTTAC
CGATTAAGCTTTACATAAAGATTTGTCCGCTTTttcgggacacactgtat
tACCTTGAAAGTCTTCCTTTTATTTGTGTAGATAGTAgggggttgtaggg
gttcgaaataccgttttcccgtcacaATTTTTACtcaatcccggaatccc
gaaaattgaaaaaaataataacactgtcacaccggtttgtagaggttaaa
ataccggcataataacaaaaataaggctagataccgtcaccgtctgattc
taaccctatttttatcaggggggtgttttccaccaggctggcactctttt
gctaatagtccactgaaaactttttttaacactctgaaagtttttggctt
ttaatataatcctattagcagcatgtataccaaattttacaattatacac
cgaccagatcaggttttatgacttttttgtgcaggcatatcataaaatcc
agctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNtaagcggaactaaaatactgaaacgcgcgcgcaaaattatgagat
gttttcccaactttccctcacgagtgaagctatgaatgccatcctcggaa
gctttagccttcctgcggtggcaaaaatttttcgctgaatccgcaaaaac
ggcaaattctgtcatttttatgcaaaatataggagaaaaatatctttaaa
gcttaatattttcagttccaGTTAAGCTTTTANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNtttgtgcaggcatatcataaaatccagctaaaac
cctgtaaaatcccaaaatcttaaatttagcataactttagatctaggcat
ccaactgacttcaaatttcgaCAGGTTCTAGGTGtcaatgataaatttta
caaaatatttttaaaattttcaaaaactgctgacgtcattgttttttgaa
aaaaattactcattttctgcatggattttaaacctcgattttatcagtat
gttaaaaaccggcaaatatgttaaacaTATTCGTTTtagcttttagaaat
tcaaaacagaattgaaaaatctccattcgttcaactttaactgctatttt
attgaatagtactttttcattggtaagCGATAATtatgaaactttgtgat
gacgtcatcatctttatgatgacgtcatcaacccaaatttttttatatga
actccttttatggtagagaacatttgtgccaaatttcaagtccacacctt
ttctagatcaaaagttatgcaaggctggtggaaaacaccccttccccctt
gagaatacaaaatccaaaaaagcctgataatGATAGggttaaaataccgt
tttcccgcgTCTctttttttggtcaaatcccgtaataccgtactaaaata
aaaccaatcccgtcacaccgtaaaagtacaacccccccttAGCAGGGACA
AAAAATCACTCTTCGTGTTATGCATTATAATTTTCCATCCAATAGGAGCC
TGCAGAGAACGATGAGCTGTTGAATTGTATCAAGTATGTTCGACCAGGGT
TTGGCTATGAACCTTTGTTTCCATTGGCCAAGAAAGGCGATGTCAATGGC
ATGTATGAACATCCTATCTATACTTTCCTCAAGGTAACTTCTTTTCTcta
ataacacccctgtctcacagccccggtggaactttttttctcagcgggga
taaaaattcctattgaaatcccaatggggatagaaattcctttgttccaa
ggttaaaaattcagtggcaatggttttgaagtgcaatttttaaacattgg
attttaaatggggatgaaataaaagttaatatccatttgaggctgaaatt
gtaaggtattttcccaccgcgagacgaaatttttgtcaattttcccaGTA
GGGccgggttcccagtgggtctgtgacacaggggtatctAATGTAaaata
tccaatgaaataaagttgaagtacagttgacgctctctaattcgatcttc
aaggggaatcggattttcatcgaatacgggagcgtatcgaatagtaggaa
GTCTCCCTAATCCGATATACACGAGGTAAATATCGAATTATAGAGCTGAG
AAAGAAAATATAAGCGAGACTCGATTGGTTTGAACGCGAATCAGGACAAA
TGTCTAAGTTCTTGCTGAAAACCTAAGTTCTTCGGAAGAAAACTTTCGAT
ATTTGCccgttttgaaaagttttgaggaATCGAATTACGAAATTATAATT
CAAacgcaaaaaaatcgaaaatttgaatttcgaacTCCGTCCTAAAGGCC
TTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCgtagtttat
gagagtttcttaagcaaatttgacggtgactttcaatttgatcgaaaacg
ggagcttatcgaatagtagaacgtcgaattagagagcgtccacTGTATTA
AAATCGTATAAAATacctaaaatctcaatatatttcgacaaAGATTGTAG
CTATGTAAAAATCAAATTGTCTATTTTGTCTATTTTATAATTCTCTATTT
AGACTCGTTGTCCCGCTCCTATGGGTTTGATTGCAAACCGAACAGACATC
ACATGGCAACCAATCAGAAACAATGATATCTCATGGAATTTCCAAAAATG
GCTGATCAAACATGATGGCCAGCCTTTCAAGAGGTATGTtagttcaaaaa
ataaattggcttttagaattatacccttacagtgcagtaaAAAACCGtag
aaattcatacccttacagtgcatttttgtcaaattttcaactcttttaga
gcaaaaaaatcagaattttttgCGGATTGCCGCACCTGTTTTTGCCAAAT
TATCTGATAGCCTTTGGctttaagaaaaaagttttgagtccaagaattat
tttttgaaattttatttgtttaaaaagaTTTGATTACGTTAACTTTGCCA
TTTCAGTGGAATTTGAGAGAATCAGTTTGTGCGTTGAAATCATTATAAAT
GCTCTACTTGTGTTTTTTACTCTAGATATACATCACGTACTACTCCACAA
GCAATTGAAAATGACATAGTCATGCTCTTGGATGATTGTACAGCTGCCAC
TAAACAATCACAACAAAGTCAAGATAATGCAGTTCCACAGGCTGCTCAAC
CTCAATCACCACAGGCTAATGCTGTTCCACAACAACAATCACCACAGGCT
AATGCTGTTCCACAACAACAATCACCACAGGCTAATGCATATCCTCAAAA
ACCACAGGCTAATGATGTTCCACAGCGACCAGCAACCGCAGGTGCACAAC
CACAAGCACAAACTGTAGCCTTTGAACACTCCCCACAACAGCCATCATCC
GATAGCGTCGCCCTCGAAACACAACCTAAACCAAATGCGTTTGTGCAACC
ACCTGCACCTGTTAATCAAACACAACCGCAGCCAGCAGCGAGTGGACGCA
AGAGGAGATCACTACTTCCGCGCCGCCACTAAAAAATTTCACGAAAATAA
TACAATACAAAAAACTATATCTTTCGGTTAGTTTAAAGCTTGGAATCTTG
CCACCGCAGTGTCATCAACTTGTTTTGGGCTAACCTCACATACAAAGATA
TATcgaaaaagaatacaaaatttacattaaaacacatgggataaaaaaat
tataaaatgaagGATGGGGGCATTACAATTGCCTACAACTTCGAATTTGT
TGAACACTTCGCACCAGATGGCACAGTTTTTATGAAGATCTATATCGCAA
ATTGGTTTTGCAACGTTCCAATAGATGTGGATTTGATAGAGTTGATCGTT
TCACTGGATTTGATAAAGAGATCAGTTCTTTTGTAATTTATTCAGTCTTT
TATANaccgctgtataatttaccgccttatttttgcggaacacttaattg
gccggaaatcaaattacaaacaaacaaacgcaaagattcgagattccagt
ccaatatttatgcgtgaagctatgagtgcctcctcgtcgctgcgctcctg
cgggggcaaaaaa Coding sequence (CDS) from alignment at scaffold_226:479540..488302+ >TCONS_00053156 ID=TCONS_00053156|Name=TCONS_00053156|organism=Clytia hemisphaerica|type=CDS|length=3915bp|location=Sequence derived from alignment at scaffold_226:479540..488302+ (Clytia hemisphaerica)
ATGAatgaattacaaaaaaaatacgGTAATCGTACCGGTCAATGCAATCT
CCAACTATTCGGTTTCCCATGTAACCAATTCGGATATCAGGAGCCTGCAG
AGAACGATGAGCTGTTGAATTGTATCAAGTATGTTCGACCAGGGTTTGGC
TATGAACCTTTGTTTCCATTGGCCAAGAAAGGCGATGTCAATGGCATGTA
TGAACATCCTATCTATACTTTCCTCAAGACTCGTTGTCCCGCTCCTATGG
GTTTGATTGCAAACCGAACAGACATCACATGGCAACCAATCAGAAACAAT
GATATCTCATGGAATTTCCAAAAATGGCTGATCAAACATGATGGCCAGCC
TTTCAAGAGATATACATCACGTACTACTCCACAAGCAATTGAAAATGACA
TAGTCATGCTCTTGGATGATTGTACAGCTGCCACTAAACAATCACAACAA
AGTCAAGATAATGCAGTTCCACAGGCTGCTCAACCTCAATCACCACAGGC
TAATGCTGTTCCACAACAACAATCACCACAGGCTAATGCATATCCTCAAA
AACCACAGGCTAATGATGTTCCACAGCGACCAGCAACCGCAGGTGCACAA
CCACAAGCACAAACTGTAGCCTTTGAACACTCCCCACAACAGCCATCATC
CGATAGCGTCGCCCTCGAAACACAACCTAAACCAAATGCGTTTGTGCAAC
CACCTGCACCTGTTAATCAAACACAACCGCAGCCAGCAGCGAGTGGACGC
AAGAGGAGATCACTACTTCCGCGCCGCCACTAAATGAatgaattacaaaa
aaaatacgGTAATCGTACCGGTCAATGCAATCTCCAACTATTCGGTTTCC
CATGTAACCAATTCGGATATCAGGAGCCTGCAGAGAACGATGAGCTGTTG
AATTGTATCAAGTATGTTCGACCAGGGTTTGGCTATGAACCTTTGTTTCC
ATTGGCCAAGAAAGGCGATGTCAATGGCATGTATGAACATCCTATCTATA
CTTTCCTCAAGACTCGTTGTCCCGCTCCTATGGGTTTGATTGCAAACCGA
ACAGACATCACATGGCAACCAATCAGAAACAATGATATCTCATGGAATTT
CCAAAAATGGCTGATCAAACATGATGGCCAGCCTTTCAAGAGATATACAT
CACGTACTACTCCACAAGCAATTGAAAATGACATAGTCATGCTCTTGGAT
GATTGTACAGCTGCCACTAAACAATCACAACAAAGTCAAGATAATGCAGT
TCCACAGGCTGCTCAACCTCAATCACCACAGGCTAATGCTGTTCCACAAC
AACAATCACCACAGGCTAATGCATATCCTCAAAAACCACAGGCTAATGAT
GTTCCACAGCGACCAGCAACCGCAGGTGCACAACCACAAGCACAAACTGT
AGCCTTTGAACACTCCCCACAACAGCCATCATCCGATAGCGTCGCCCTCG
AAACACAACCTAAACCAAATGCGTTTGTGCAACCACCTGCACCTGTTAAT
CAAACACAACCGCAGCCAGCAGCGAGTGGACGCAAGAGGAGATCACTACT
TCCGCGCCGCCACTAAATGAatgaattacaaaaaaaatacgGTAATCGTA
CCGGTCAATGCAATCTCCAACTATTCGGTTTCCCATGTAACCAATTCGGA
TATCAGGAGCCTGCAGAGAACGATGAGCTGTTGAATTGTATCAAGTATGT
TCGACCAGGGTTTGGCTATGAACCTTTGTTTCCATTGGCCAAGAAAGGCG
ATGTCAATGGCATGTATGAACATCCTATCTATACTTTCCTCAAGACTCGT
TGTCCCGCTCCTATGGGTTTGATTGCAAACCGAACAGACATCACATGGCA
ACCAATCAGAAACAATGATATCTCATGGAATTTCCAAAAATGGCTGATCA
AACATGATGGCCAGCCTTTCAAGAGATATACATCACGTACTACTCCACAA
GCAATTGAAAATGACATAGTCATGCTCTTGGATGATTGTACAGCTGCCAC
TAAACAATCACAACAAAGTCAAGATAATGCAGTTCCACAGGCTGCTCAAC
CTCAATCACCACAGGCTAATGCTGTTCCACAACAACAATCACCACAGGCT
AATGCATATCCTCAAAAACCACAGGCTAATGATGTTCCACAGCGACCAGC
AACCGCAGGTGCACAACCACAAGCACAAACTGTAGCCTTTGAACACTCCC
CACAACAGCCATCATCCGATAGCGTCGCCCTCGAAACACAACCTAAACCA
AATGCGTTTGTGCAACCACCTGCACCTGTTAATCAAACACAACCGCAGCC
AGCAGCGAGTGGACGCAAGAGGAGATCACTACTTCCGCGCCGCCACTAAA
TGAatgaattacaaaaaaaatacgGTAATCGTACCGGTCAATGCAATCTC
CAACTATTCGGTTTCCCATGTAACCAATTCGGATATCAGGAGCCTGCAGA
GAACGATGAGCTGTTGAATTGTATCAAGTATGTTCGACCAGGGTTTGGCT
ATGAACCTTTGTTTCCATTGGCCAAGAAAGGCGATGTCAATGGCATGTAT
GAACATCCTATCTATACTTTCCTCAAGACTCGTTGTCCCGCTCCTATGGG
TTTGATTGCAAACCGAACAGACATCACATGGCAACCAATCAGAAACAATG
ATATCTCATGGAATTTCCAAAAATGGCTGATCAAACATGATGGCCAGCCT
TTCAAGAGATATACATCACGTACTACTCCACAAGCAATTGAAAATGACAT
AGTCATGCTCTTGGATGATTGTACAGCTGCCACTAAACAATCACAACAAA
GTCAAGATAATGCAGTTCCACAGGCTGCTCAACCTCAATCACCACAGGCT
AATGCTGTTCCACAACAACAATCACCACAGGCTAATGCATATCCTCAAAA
ACCACAGGCTAATGATGTTCCACAGCGACCAGCAACCGCAGGTGCACAAC
CACAAGCACAAACTGTAGCCTTTGAACACTCCCCACAACAGCCATCATCC
GATAGCGTCGCCCTCGAAACACAACCTAAACCAAATGCGTTTGTGCAACC
ACCTGCACCTGTTAATCAAACACAACCGCAGCCAGCAGCGAGTGGACGCA
AGAGGAGATCACTACTTCCGCGCCGCCACTAAATGAatgaattacaaaaa
aaatacgGTAATCGTACCGGTCAATGCAATCTCCAACTATTCGGTTTCCC
ATGTAACCAATTCGGATATCAGGAGCCTGCAGAGAACGATGAGCTGTTGA
ATTGTATCAAGTATGTTCGACCAGGGTTTGGCTATGAACCTTTGTTTCCA
TTGGCCAAGAAAGGCGATGTCAATGGCATGTATGAACATCCTATCTATAC
TTTCCTCAAGACTCGTTGTCCCGCTCCTATGGGTTTGATTGCAAACCGAA
CAGACATCACATGGCAACCAATCAGAAACAATGATATCTCATGGAATTTC
CAAAAATGGCTGATCAAACATGATGGCCAGCCTTTCAAGAGATATACATC
ACGTACTACTCCACAAGCAATTGAAAATGACATAGTCATGCTCTTGGATG
ATTGTACAGCTGCCACTAAACAATCACAACAAAGTCAAGATAATGCAGTT
CCACAGGCTGCTCAACCTCAATCACCACAGGCTAATGCTGTTCCACAACA
ACAATCACCACAGGCTAATGCATATCCTCAAAAACCACAGGCTAATGATG
TTCCACAGCGACCAGCAACCGCAGGTGCACAACCACAAGCACAAACTGTA
GCCTTTGAACACTCCCCACAACAGCCATCATCCGATAGCGTCGCCCTCGA
AACACAACCTAAACCAAATGCGTTTGTGCAACCACCTGCACCTGTTAATC
AAACACAACCGCAGCCAGCAGCGAGTGGACGCAAGAGGAGATCACTACTT
CCGCGCCGCCACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053156-exon-scaffold_226-1491911889:479540..480105 | TCONS_00053156-exon-scaffold_226-1491911889:479540..480105 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1510915933:479540..480105 | TCONS_00053156-exon-scaffold_226-1510915933:479540..480105 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1575043694:479540..480105 | TCONS_00053156-exon-scaffold_226-1575043694:479540..480105 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1491911889:483011..483122 | TCONS_00053156-exon-scaffold_226-1491911889:483011..483122 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1510915933:483011..483122 | TCONS_00053156-exon-scaffold_226-1510915933:483011..483122 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1575043694:483011..483122 | TCONS_00053156-exon-scaffold_226-1575043694:483011..483122 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1491911889:485585..485722 | TCONS_00053156-exon-scaffold_226-1491911889:485585..485722 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1510915933:485585..485722 | TCONS_00053156-exon-scaffold_226-1510915933:485585..485722 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1575043694:485585..485722 | TCONS_00053156-exon-scaffold_226-1575043694:485585..485722 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1491911889:486842..486972 | TCONS_00053156-exon-scaffold_226-1491911889:486842..486972 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1510915933:486842..486972 | TCONS_00053156-exon-scaffold_226-1510915933:486842..486972 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1575043694:486842..486972 | TCONS_00053156-exon-scaffold_226-1575043694:486842..486972 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1491911889:487315..487453 | TCONS_00053156-exon-scaffold_226-1491911889:487315..487453 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1510915933:487315..487453 | TCONS_00053156-exon-scaffold_226-1510915933:487315..487453 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1575043694:487315..487453 | TCONS_00053156-exon-scaffold_226-1575043694:487315..487453 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1491911889:487487..488302 | TCONS_00053156-exon-scaffold_226-1491911889:487487..488302 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1510915933:487487..488302 | TCONS_00053156-exon-scaffold_226-1510915933:487487..488302 | Clytia hemisphaerica | exon |
| TCONS_00053156-exon-scaffold_226-1575043694:487487..488302 | TCONS_00053156-exon-scaffold_226-1575043694:487487..488302 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:479540..488302 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000889 | Glutathione_peroxidase |
| IPR012336 | Thioredoxin-like_fold |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006979 | response to oxidative stress |
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004602 | glutathione peroxidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| biological_process |
GO:0006979 |
response to oxidative stress |
| molecular_function |
GO:0004602 |
glutathione peroxidase activity |
Blast
BLAST of TCONS_00053156 vs. Swiss-Prot (Human)
Match: GPX1 (Glutathione peroxidase 1 OS=Homo sapiens GN=GPX1 PE=1 SV=4) HSP 1 Score: 166.007 bits (419), Expect = 5.011e-47 Identity = 85/187 (45.45%), Postives = 119/187 (63.64%), Query Frame = 1
Query: 457 ETTFSFSTTKLSEKDPTEFTAYQGKVMLIINVASF*GYTPQ-YRYMNELQKKYGNRTGQCNLQLFGFPCNQFGYQEPAENDELLNCIKYVRPGFGYEPLFPLAKKGDVNGMYEHPIYTFLKTRCPAP----MGLIANRTDITWQPIRNNDISWNFQKWLIKHDGQPFKRYTSRTTPQAIENDIVMLL 1002
++ ++FS L+ +P + +GKV+LI NVAS G T + Y MNELQ++ G R L + GFPCNQFG+QE A+N+E+LN +KYVRPG G+EP F L +K +VNG HP++ FL+ PAP L+ + ITW P+ ND++WNF+K+L+ DG P +RY+ R IE DI LL
Sbjct: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPR----GLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 196
The following BLAST results are available for this feature:
|
