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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053171 ID=TCONS_00053171|Name=TCONS_00053171|organism=Clytia hemisphaerica|type=transcript|length=900bp
CATACTTTGAAACctagttttgtttacaaaatttacGGAGCCGGCAAATT
GTTTCCTTTCGACGAACTAGCCAAGATGgCCGACACAGCTACCATCCGTA
CGCGCAAGTTCATGACAAACCGCCTTTTGCAAAGGCGTCAGATGATCGTT
GATGTCTTGCATCCAGGAAAAGCCACAGTTTCCAAAGCTGACATTCGAGA
AAAGTTAGCTCGCATGTACAAATCTACTGCTGATTGCATTGTTTGTTTTG
GATTCAAGACCCTTTTCGGAGGTGGCAAAACCACTGGATTTGCTTTGGTT
TATGATACACTAGATTACTTGAAAAAGTTTGAACCCAAATACAGAAAACA
AAGACTTGGTCTCATTAAAGTTGAAAAACCTGCACGAAAACAACGCAAAG
AAAGAAAGAACAGAGCCAAGAAAGTCAGAGGAACCGCAAAAGCAGCCATT
ACCAAGAAGTAAATATCCTGAATGGTGCATTTTTCCATGTGAAGAGTCAG
AAGATCAAAGGCCTGTTATATCTTGGTGGGAAATACATATCACGAATACT
TCAAAATGTTTCTCATTactacaaaattttcatttgattaGTGAAGTTCA
GATATAAAATCATGAGTCGAGGTTTCGTATTTACAAGGCTTTCAAAAATT
CTTATACCTAACTTCAGTCATCAAATGAGAACGAATATTCTTGTTTGTCC
TGGCTTATTTGGCCGACGATTTGGCTATCgtagcctaatttgcaatagtt
agCTCACACAAAATGTGTGAGCCAACACCTTAATTCTACTTACTAAAGTC
TTTCTCAAAGTAATAcgttaagtggataaattttggcggggattttaaat
ttggcgaattttggccaaattccCCAAaataaatcctcgccaaaattttg Run BLAST on NCBI transcript from alignment at scaffold_226:229873..234237- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053171 ID=TCONS_00053171|Name=TCONS_00053171|organism=Clytia hemisphaerica|type=transcript|length=4365bp|location=Sequence derived from alignment at scaffold_226:229873..234237- (Clytia hemisphaerica)
CATACTTTGAAACCTAGTTTTGTTTACAAAATTTACGGAGCCGGCAAATT
GTTTCCTTTCGACGAACTAGCCAAGATGGTGGGTGAACATTTGAAATTCT
TGATAACTTCGCTACTTTTCCATCGAACTATATCCAAGGAATCTATCATC
CTGACGCTCATCCTTCTTGCAACTATCATTTCTGTATATTTGAAATTAGA
TGTCTTACCCTTCATTTGATGAATTAATACCATTTCAGTGATTAAAATCG
TCTTATTTTGTTTTTCAGGCCGACACAGCTACCATCCGTACGCGCAAGTT
CATGACAAACCGCCTTTTGCAAAGGCGTCAGATGATCGTTGATGTCTTGC
ATCCAGGAAAAGCCACAGTTTCCAAAGCTGACATTCGAGAAAAGTTAGCT
CGCATGTACAAATCTACTGCTGATTGCATTGTTTGTTTTGGATTCAAGAC
CCTTTTCGGAGGTGGCAAAACCACTGGATTTGCTTTGGTTTATGATACAC
TAGATTACTTGAAAAAGTTTGAACCCAAATACAGAAAACAAAGAGTAAGT
GGATGTCCTACAATGCACCTTGTTATCAAGATTGCCATTGCCATTATAGA
ATCCTGACATTGTAATTTTTGCATTGAATTGGTGTCAGCCACATGATGAT
ATTGGATATGTATGGTTTAAAAGGGATGAATTGTTTACTCAGTATAATCA
ATGTGGATAGCACAATTGAATTTTTATCATGGCGGCATTGCTTGGGTTGA
CAACAAAATTTATTTTGGTAAATGTATCTTGGTTCACTTGTGCTTGATGA
TAATGGAAAGATCTTTGTATGTGTTAAGATTATTTAATGATTAAAATGAT
AATATAATGATCATATACCATGGATAATCCAAGACAGTTAATACCTGTCA
CAAGCGAGCAAAGTTATGGGACTTTTTTATTTGAACGGAGTTTGTCAAAC
AATCATCAGCATCACCAATTCAATGCAAAATGTCAGATTGTTGGATATCA
AAAATGCATGGCATTTGTTTTTTAAAAGTTTTTCCATGGCGATTTTTGCA
CTGGAAAAAATTATGTTTAAGCCAGGCGTAGTTAATCGATATAATCGATA
ATCTTGAGTAATCGATAAATTATCGATAAGTAATCGATGGATTAGATATC
GATTAACCGATAGAATCGATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCAGCAATCGATTATTTCCAAGCTATC
GATTACTTATCGATCACATATCGACTACATACAACCTATCGATTACTTAT
CAATCATGTATTGATTGTTAACAATCAACGTTTACTTATCGTTCGTGCAT
TGATTACTTATCAATTATTTACTTATCTTCGCTCATGTATCGTTATCGAT
TACTTATAAATTATTTACTTATCTTCGCTCATGTATCGTTATCGATTATA
TCGATCGTGATCGACAGCTGTGATCAATAGCCGATCGATTTTTAATCAAT
ACTTAATTTAATCGAAGTATAATCGATCTATAATCGGTAAACAATCAATG
ACAAAATTGATCGATAAATAATCGAGCTTTGAAAAAATCTTTAGTATCGA
TTACCTAACGATTCTATCGGTTAATCGATATCTAATCCATCGATTATTTA
TCGATTATTCAAGATTATCGATTATATCGATTAACTACGCCTGGTTTAAG
CTGGTATAAGTGGAATCTACTTGTCAAGAGAGGTTTTATAACAGTGTTAA
CAGCAGTTAGAAAGAGCACAATTGTTATATTAGTCAGGGATTCTAACTAC
AAGCTTATTAATTTACACAAAGATTACATTTTGTGCAAGTTTTTCAAAAA
ATTACTGAAAGAAACCTCAAAGAAAAAAATAAAAAATAATTTGATAAAGG
GACTGATTTGGGAAAAAGTCCCACAAAGACTATTACTTTGTTTTTAGAAA
GTTCTTGTCAAATCTATACACTCAGTCAGTACTTTCTAATTATTGGGTCC
GTTCATTTTCAAATTTTGAAGCAGGGCTAAGGATAATTTTTTTCACTAAT
TGAAGGATACGTATGAATTTTTGAAAATATTTTCAAAGAAGAGTATTTTT
TCCTAAATAGCCTGGTGTCCCCTTCATTTTTTGGGCTTCTTCATAGAAAC
AATTTCCATGTCCCTATTTTTTTCAAGCCCTCTCTACTAGACACCTGGGA
ATATTTGTTTAAGGGTACATTGCATGAATTTCTGTGAAATCGGATTTGAT
CAACTCAGAGTAATTGTAATTTTTATTGTTTTCTCTTAGCTTGGTCTCAT
TAAAGTTGAAAAACCTGCACGAAAACAACGCAAAGAAAGAAAGAACAGAG
CCAAGAAAGTCAGAGGAACCGCAAAAGCAGCCATTACCAAGAAGGTATGG
TTTTAATTTATTTATTTGTGTATAAAACCATCTACCAACTATCAACTAAT
TATAGTGAATTCATTTGACTATGTATCATTTGAGACATGCTGGTAAGCAA
AAGTAGAATTTTGGCTTAAGGTGCCCCCTTGTAGGCTTATCCTACCCAAC
ACGCTACAGTTTGGTAATTGTTATAGAGAATTTTGGATGATGAAAAACCC
AACCTTTATCGTCCACACATACTAAGCACCCATTTTTGCCTAAGTCCCGG
GGACGAGTACCTAAAAAATGGGGAAAAATTGATCGGTATCGGTATTTGAA
CGAAAAAATTATCGGTATATCGGTAATTAAGAGAAANTTTTTTTCACTAA
TTGAAGGATACGTATGAATTTTTGAAAATATTTTCAAAGAAGAGTATTTT
TTCCTAAATAGCCTGGTGTCCCCTTCATTTTTTGGGCTTCTTCATAGAAA
CAATTTCCATGTCCCTATTTTTTTCAAGCCCTCTCTACTAGACACCTGGG
AATATTTGTTTAAGGGTACATTGCATGAATTTCTGTGAAATCGGATTTGA
TCAACCAAGAGTAATTGTAATTTTTATTGTTTTCTCTTAGCTTGGTCTCA
TTAAAGTTGAAAAACCTGCACGAAAACAACGCAAAGAAAGAAAGAACAGA
GCCAAGAAAGTCAGAGGAACCGCAAAAGCAGCCATTACCAAGAAGGTATG
GTTTTAATTTATTTATTTGTGTATAAAACCATCTACCAACTATCAACTAA
TTATAGTGAATTCATTTGACTATGTATCATTTGAGACATGCTGGTAAGCA
AAAGTAGAATTTTGGCTTAAGGTGCCCCCTTGTAGGCTTATCCTACCCAA
CACGCTACAGTTTGGTAATTGTTATAGAGAATTTTGGATGATGAAAAACC
CAACCTTTATCGTCCACACATACTAAGCACCCATTTTTGCCTAAGTCCCG
GGGACGAGTACCTAAAAAATGGGGAAAAATTGATCGGTATCGGTATTTGA
ACGAAAAAATTATCGGTATATCGGTAATTAAGAGAAAAAGTGATCGGTAT
ACACGTTTTTTTTTTTTTAAGAAACTAGTTTCACCACGCAGCCTCGATGT
TTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTTTCTTACATGTTTCTA
AACTTTTTAACATAATCAGCCTCGTAGAAGGCTGGGTTGGAAGGTTCTTA
AAAAAACGAGTTAAAAAATCTTATTTTCTCATTCTCAGCCTCAGCATGTT
TCTTAGATGTTTCTTAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAA
AGTGTGTTTCTTAAAAAAAAAAAAACGTGTATCGGTATTACGAAGTCCCG
TACGCCCCCACTATATTTCCCTTTCAGTAAATATCCTGTTGGTATAAATC
AATACTCTTATATTTCCCTTTCAGTAAATATCCTGAATGGTGCATTTTTC
CATGTGAAGAGTCAGAAGATCAAAGGCCTGTTATATCTTGGTGGGAAATA
CATATCACGAATACTTCAAAATGTTTCTCATTACTACAAAATTTTCATTT
GATTAGTGAAGTTCAGATATAAAATCATGAGTCGAGGTTTCGTATTTACA
AGGCTTTCAAAAATTCTTATACCTAACTTCAGTCATCAAATGAGAACGAA
TATTCTTGTTTGTCCTGGCTTATTTGGCCGACGATTTGGCTATCGTAGCC
TAATTTGCAATAGTTAGCTCACACAAAATGTGTGAGCCAACACCTTAATT
CTACTTACTAAAGTCTTTCTCAAAGTAATACGTTAAGTGGATAAATTTTG
GCGGGGATTTTAAATTTGGCGAATTTTGGCCAAATTCCCCAAAATAAATC
CTCGCCAAAATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053171-exon-scaffold_226-1575043694:234160..234237 | TCONS_00053171-exon-scaffold_226-1575043694:234160..234237 | Clytia hemisphaerica | exon |
| TCONS_00053171-exon-scaffold_226-1575043694:233694..233969 | TCONS_00053171-exon-scaffold_226-1575043694:233694..233969 | Clytia hemisphaerica | exon |
| TCONS_00053171-exon-scaffold_226-1575043694:231043..231147 | TCONS_00053171-exon-scaffold_226-1575043694:231043..231147 | Clytia hemisphaerica | exon |
| TCONS_00053171-exon-scaffold_226-1575043694:229873..230313 | TCONS_00053171-exon-scaffold_226-1575043694:229873..230313 | Clytia hemisphaerica | exon |
| TCONS_00053171-exon-scaffold_226-1510915933:234160..234237 | TCONS_00053171-exon-scaffold_226-1510915933:234160..234237 | Clytia hemisphaerica | exon |
| TCONS_00053171-exon-scaffold_226-1510915933:233694..233969 | TCONS_00053171-exon-scaffold_226-1510915933:233694..233969 | Clytia hemisphaerica | exon |
| TCONS_00053171-exon-scaffold_226-1510915933:231043..231147 | TCONS_00053171-exon-scaffold_226-1510915933:231043..231147 | Clytia hemisphaerica | exon |
| TCONS_00053171-exon-scaffold_226-1510915933:229873..230313 | TCONS_00053171-exon-scaffold_226-1510915933:229873..230313 | Clytia hemisphaerica | exon |
| TCONS_00053171-exon-scaffold_226-1491911889:234160..234237 | TCONS_00053171-exon-scaffold_226-1491911889:234160..234237 | Clytia hemisphaerica | exon |
| TCONS_00053171-exon-scaffold_226-1491911889:233694..233969 | TCONS_00053171-exon-scaffold_226-1491911889:233694..233969 | Clytia hemisphaerica | exon |
| TCONS_00053171-exon-scaffold_226-1491911889:231043..231147 | TCONS_00053171-exon-scaffold_226-1491911889:231043..231147 | Clytia hemisphaerica | exon |
| TCONS_00053171-exon-scaffold_226-1491911889:229873..230313 | TCONS_00053171-exon-scaffold_226-1491911889:229873..230313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:229873..234237 - |
Blast
BLAST of TCONS_00053171 vs. Swiss-Prot (Human)
Match: RS24 (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.035e-41 Identity = 86/119 (72.27%), Postives = 100/119 (84.03%), Query Frame = 1
Query: 76 MADTATIRTRKFMTNRLLQRRQMIVDVLHPGKATVSKADIREKLARMYKSTADCIVCXXXXXXXXXXXXXXXALVYDTLDYLKKFEPKYRKQRLGLIKVEKPARKQRKERKNRAKKVRG 432
M DT TIRTRKFMTNRLLQR+QM++DVLHPGKATV K +IREKLA+MYK+T D I FGF+T FGGGKTTGF ++YD+LDY KK EPK+R R GL + +K +RKQRKERKNR KKVRG
Sbjct: 1 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
The following BLAST results are available for this feature:
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