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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053190 ID=TCONS_00053190|Name=TCONS_00053190|organism=Clytia hemisphaerica|type=transcript|length=1867bp
gaaaattcatttcaaagagagaaacatttttgtggcgcacctggtacagg
gatcgaattagcgtatcgcatttcgcaattagcgatgcgtttttggatta
cttacaagctaaaaattgaaaattgatccattttaggatgcaaaatcatg
cttatcaaaaaattgcgatgcactttctatcTCTTATTTCGATGCCTGTG
GTATAATGGTAAAACGACTTCATAATGGTACAACAATCTCATATAACTAA
AAAATAACCTCATGTGATGGTAAAATAACCCCATATAATGGTAAAACGAT
GCCTTGTAATTTTGCTGACAACTTAAGGCAGTAATCATGAAGttacatat
tttttgtttatttgatagTATAAAATCAATTAGCTTAAAATTATGGTGAT
ATTTTCTGATGATGAAATAGCTGTCATATCTCAAATGGTTAGAAGAGGTT
TCACCCATGAAGAAGTCTCACAATATTTCATAAGGCTCTATCCAGGAATC
AGGGGTTACAGTGCGAGAAGTATAAGAAGAGCTTGTAATACTCATCATAT
TACGCGGATTTCTGATATTGAACTTGATGATGTCATCAGAAATTTGATTG
TTAGGTATGGAAATATGTATGGTCGCACAATGATGCAAGGAAGTGTAAAT
GCTATTCTTCAGGTTACACGAGGTGCAGTTTCACAAAGGCGAATTGCAAG
ATCTCTTCAACGAGTTGACCCAGTAGCTTACGATGCAAGAAGACGAGATG
TGTTAGAAAGGACAAATCCTATCCCTTACTATGCGCCATATTTTGGCTAT
AAGGTCCACATggaccaaaatgaaaaaatagccCAGCGCTATGGATGCAC
CCATGTTGTACTTATTGATGGTTGTTCCAGAATGGTGTGTGGGTTTGCAT
CAATGGAGGTCAAAAATCCTATACTAATTTATGAGTTTGTGTTTCGACCT
GCCATCCAACGTTATGGTCTATGGGATCAACTACGTGTGGACCATGGCAC
AGAATTTTTTCTTTGCCTCTTTATTCAAGATTTGCTGAAAAATCACCGTG
TGAATCAACACAGGGTCCCTTGGAGGCAAACAACTTCTACTGAGAATTAT
GTTGTTGAAAGGTTCTGGCCAGAGGTCAATTCAAGAGTCAACTATCCATT
GAAGCGAGCTCTAAACCAGTTGGCAGAAATGCACTATGATTTGACTGATC
CTTTGAGCAAATTTTGTATTTCTTGGGTCACCCTCTTTGTTGTGAAAGAT
TCTGCACAACATTTGGTGAATTCATGGAATCACCACAGAGTTCCTGGATC
TCTAGGATGTGTTCCTGTGGAAAATATGATTGAAACTCAAAACACGGCTC
AGTTACCAGAAATTCATATACCAACAACGGCTGAAGCAGTTAGAATGTAC
CTGGAAAGAGGAGGTCAACTAAACCACAACCCAGCTTTTGGTGTCGACCC
TCTTTTGGGAACAGACCATTTATATGAATCAAGGAATGAAATGTTTCATC
AACTAAAGATGTTTTCTGCAGATCAAGTTTTCTCTGACGTATTGCGTGGT
GATTATCATAGCTTGAAATCCCTCATTGACTTGTTTGTATATTTAACCAG
TTATTTGAATAGCTTGGATGTTCaataagagttttttttttaattctatt
tACTATATCAATTGATATCTAGCACTGTtgtttgtttcattgttttaccG
CTTTGTGGTAAATTTTTTGGGTAAATAACCCAAATTCCTGAtataattga
aatttgaaattaaaactcTGATCTGACagtttaaagtttgttttggTGTT
CTAATGAATCCCCGAAAGACTTTTCGATTCGGACCACTAGATCAGAAtat
atttcacttttattttc Run BLAST on NCBI protein sequence of TCONS_00053190-protein >TCONS_00053190-protein ID=TCONS_00053190-protein|Name=TCONS_00053190-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
MVIFSDDEIAVISQMVRRGFTHEEVSQYFIRLYPGIRGYSARSIRRACNT
HHITRISDIELDDVIRNLIVRYGNMYGRTMMQGSVNAILQVTRGAVSQRR
IARSLQRVDPVAYDARRRDVLERTNPIPYYAPYFGYKVHMDQNEKIAQRY
GCTHVVLIDGCSRMVCGFASMEVKNPILIYEFVFRPAIQRYGLWDQLRVD
HGTEFFLCLFIQDLLKNHRVNQHRVPWRQTTSTENYVVERFWPEVNSRVN
YPLKRALNQLAEMHYDLTDPLSKFCISWVTLFVVKDSAQHLVNSWNHHRV
PGSLGCVPVENMIETQNTAQLPEIHIPTTAEAVRMYLERGGQLNHNPAFG
VDPLLGTDHLYESRNEMFHQLKMFSADQVFSDVLRGDYHSLKSLIDLFVY
LTSYLNSLDVQ Run BLAST on NCBI transcript from alignment at scaffold_226:219080..220946 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053190 ID=TCONS_00053190|Name=TCONS_00053190|organism=Clytia hemisphaerica|type=transcript|length=1867bp|location=Sequence derived from alignment at scaffold_226:219080..220946 (Clytia hemisphaerica)
gaaaataaaagtgaaatataTTCTGATCTAGTGGTCCGAATCGAAAAGTC
TTTCGGGGATTCATTAGAACAccaaaacaaactttaaactGTCAGATCAg
agttttaatttcaaatttcaattataTCAGGAATTTGGGTTATTTACCCA
AAAAATTTACCACAAAGCggtaaaacaatgaaacaaacaACAGTGCTAGA
TATCAATTGATATAGTaaatagaattaaaaaaaaaactcttattGAACAT
CCAAGCTATTCAAATAACTGGTTAAATATACAAACAAGTCAATGAGGGAT
TTCAAGCTATGATAATCACCACGCAATACGTCAGAGAAAACTTGATCTGC
AGAAAACATCTTTAGTTGATGAAACATTTCATTCCTTGATTCATATAAAT
GGTCTGTTCCCAAAAGAGGGTCGACACCAAAAGCTGGGTTGTGGTTTAGT
TGACCTCCTCTTTCCAGGTACATTCTAACTGCTTCAGCCGTTGTTGGTAT
ATGAATTTCTGGTAACTGAGCCGTGTTTTGAGTTTCAATCATATTTTCCA
CAGGAACACATCCTAGAGATCCAGGAACTCTGTGGTGATTCCATGAATTC
ACCAAATGTTGTGCAGAATCTTTCACAACAAAGAGGGTGACCCAAGAAAT
ACAAAATTTGCTCAAAGGATCAGTCAAATCATAGTGCATTTCTGCCAACT
GGTTTAGAGCTCGCTTCAATGGATAGTTGACTCTTGAATTGACCTCTGGC
CAGAACCTTTCAACAACATAATTCTCAGTAGAAGTTGTTTGCCTCCAAGG
GACCCTGTGTTGATTCACACGGTGATTTTTCAGCAAATCTTGAATAAAGA
GGCAAAGAAAAAATTCTGTGCCATGGTCCACACGTAGTTGATCCCATAGA
CCATAACGTTGGATGGCAGGTCGAAACACAAACTCATAAATTAGTATAGG
ATTTTTGACCTCCATTGATGCAAACCCACACACCATTCTGGAACAACCAT
CAATAAGTACAACATGGGTGCATCCATAGCGCTGggctattttttcattt
tggtccATGTGGACCTTATAGCCAAAATATGGCGCATAGTAAGGGATAGG
ATTTGTCCTTTCTAACACATCTCGTCTTCTTGCATCGTAAGCTACTGGGT
CAACTCGTTGAAGAGATCTTGCAATTCGCCTTTGTGAAACTGCACCTCGT
GTAACCTGAAGAATAGCATTTACACTTCCTTGCATCATTGTGCGACCATA
CATATTTCCATACCTAACAATCAAATTTCTGATGACATCATCAAGTTCAA
TATCAGAAATCCGCGTAATATGATGAGTATTACAAGCTCTTCTTATACTT
CTCGCACTGTAACCCCTGATTCCTGGATAGAGCCTTATGAAATATTGTGA
GACTTCTTCATGGGTGAAACCTCTTCTAACCATTTGAGATATGACAGCTA
TTTCATCATCAGAAAATATCACCATAATTTTAAGCTAATTGATTTTATAc
tatcaaataaacaaaaaatatgtaaCTTCATGATTACTGCCTTAAGTTGT
CAGCAAAATTACAAGGCATCGTTTTACCATTATATGGGGTTATTTTACCA
TCACATGAGGTTATTTTTTAGTTATATGAGATTGTTGTACCATTATGAAG
TCGTTTTACCATTATACCACAGGCATCGAAATAAGAgatagaaagtgcat
cgcaattttttgataagcatgattttgcatcctaaaatggatcaattttc
aatttttagcttgtaagtaatccaaaaacgcatcgctaattgcgaaatgc
gatacgctaattcgatccctgtaccaggtgcgccacaaaaatgtttctct
ctttgaaatgaattttc Coding sequence (CDS) from alignment at scaffold_226:219080..220946 >TCONS_00053190 ID=TCONS_00053190|Name=TCONS_00053190|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_226:219080..220946 (Clytia hemisphaerica)
ttattGAACATCCAAGCTATTCAAATAACTGGTTAAATATACAAACAAGT
CAATGAGGGATTTCAAGCTATGATAATCACCACGCAATACGTCAGAGAAA
ACTTGATCTGCAGAAAACATCTTTAGTTGATGAAACATTTCATTCCTTGA
TTCATATAAATGGTCTGTTCCCAAAAGAGGGTCGACACCAAAAGCTGGGT
TGTGGTTTAGTTGACCTCCTCTTTCCAGGTACATTCTAACTGCTTCAGCC
GTTGTTGGTATATGAATTTCTGGTAACTGAGCCGTGTTTTGAGTTTCAAT
CATATTTTCCACAGGAACACATCCTAGAGATCCAGGAACTCTGTGGTGAT
TCCATGAATTCACCAAATGTTGTGCAGAATCTTTCACAACAAAGAGGGTG
ACCCAAGAAATACAAAATTTGCTCAAAGGATCAGTCAAATCATAGTGCAT
TTCTGCCAACTGGTTTAGAGCTCGCTTCAATGGATAGTTGACTCTTGAAT
TGACCTCTGGCCAGAACCTTTCAACAACATAATTCTCAGTAGAAGTTGTT
TGCCTCCAAGGGACCCTGTGTTGATTCACACGGTGATTTTTCAGCAAATC
TTGAATAAAGAGGCAAAGAAAAAATTCTGTGCCATGGTCCACACGTAGTT
GATCCCATAGACCATAACGTTGGATGGCAGGTCGAAACACAAACTCATAA
ATTAGTATAGGATTTTTGACCTCCATTGATGCAAACCCACACACCATTCT
GGAACAACCATCAATAAGTACAACATGGGTGCATCCATAGCGCTGggcta
ttttttcattttggtccATGTGGACCTTATAGCCAAAATATGGCGCATAG
TAAGGGATAGGATTTGTCCTTTCTAACACATCTCGTCTTCTTGCATCGTA
AGCTACTGGGTCAACTCGTTGAAGAGATCTTGCAATTCGCCTTTGTGAAA
CTGCACCTCGTGTAACCTGAAGAATAGCATTTACACTTCCTTGCATCATT
GTGCGACCATACATATTTCCATACCTAACAATCAAATTTCTGATGACATC
ATCAAGTTCAATATCAGAAATCCGCGTAATATGATGAGTATTACAAGCTC
TTCTTATACTTCTCGCACTGTAACCCCTGATTCCTGGATAGAGCCTTATG
AAATATTGTGAGACTTCTTCATGGGTGAAACCTCTTCTAACCATTTGAGA
TATGACAGCTATTTCATCATCAGAAAATATCACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053190-exon-scaffold_226-1491911889:219080..220946 | TCONS_00053190-exon-scaffold_226-1491911889:219080..220946 | Clytia hemisphaerica | exon |
| TCONS_00053190-exon-scaffold_226-1510915933:219080..220946 | TCONS_00053190-exon-scaffold_226-1510915933:219080..220946 | Clytia hemisphaerica | exon |
| TCONS_00053190-exon-scaffold_226-1575043694:219080..220946 | TCONS_00053190-exon-scaffold_226-1575043694:219080..220946 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:219080..220946 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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