TCONS_00053192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053192
Unique NameTCONS_00053192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053192 ID=TCONS_00053192|Name=TCONS_00053192|organism=Clytia hemisphaerica|type=transcript|length=255bp
TTGTCACGAAAACTCAGCAAAGTCGAATACATATTACACGTTTATTAAAT
CTTCACGAATCGTTATTCATTCTTCATGATAAACATGCTGCATaaagtta
aaaacaaatatcaaaataaatgtcGGATCTTGATCAAAATGTTGGGAAAA
ATGCTTGTCATACTGGTTTACCTTTCTCCCGATAACGATGTATCCTGTAT
CCTGTTAACGATATATCCTGTATCCTGATTATGATGTATCCTATTTATGC
TTTGC
Run BLAST on NCBI

transcript from alignment at scaffold_226:261494..261748

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053192 ID=TCONS_00053192|Name=TCONS_00053192|organism=Clytia hemisphaerica|type=transcript|length=255bp|location=Sequence derived from alignment at scaffold_226:261494..261748 (Clytia hemisphaerica)
GCAAAGCATAAATAGGATACATCATAATCAGGATACAGGATATATCGTTA
ACAGGATACAGGATACATCGTTATCGGGAGAAAGGTAAACCAGTATGACA
AGCATTTTTCCCAACATTTTGATCAAGATCCgacatttattttgatattt
gtttttaactttATGCAGCATGTTTATCATGAAGAATGAATAACGATTCG
TGAAGATTTAATAAACGTGTAATATGTATTCGACTTTGCTGAGTTTTCGT
GACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033575XLOC_033575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053192-exon-scaffold_226-1491911889:261494..261748TCONS_00053192-exon-scaffold_226-1491911889:261494..261748Clytia hemisphaericaexon
TCONS_00053192-exon-scaffold_226-1510915933:261494..261748TCONS_00053192-exon-scaffold_226-1510915933:261494..261748Clytia hemisphaericaexon
TCONS_00053192-exon-scaffold_226-1575043694:261494..261748TCONS_00053192-exon-scaffold_226-1575043694:261494..261748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:261494..261748 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.41904	3.48603	1.91992	2.0185	48.6267	23.099	25.0845	28.4912	14.9549	16.5561	8.22914	17.0893	12.8733	10.9669	4.34048	10.4584	8.05398	4.28803	28.0155	23.9143	15.1142	32.039	13.0881	19.5315	9.62458	17.7694	40.103	44.8094	59.1714	52.8053
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top