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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053193 ID=TCONS_00053193|Name=TCONS_00053193|organism=Clytia hemisphaerica|type=transcript|length=2428bp
TGCTGAAGTAAATGTGGATAAAATGTGTCAAGTAAATCTAATGGGACAAA
TGTGTGAGCagtttacaaagttttttatAAATCTTCGTACaatacgaaaa
aaaaacaattattcaTCATCGTCTAGCTTTACAAAAACATTAGaacaaaa
atgttctttaaaataACCTGCTCCTTGTTCCTCGTACTCCTCTCTGGAAA
TTGAAATTGTCGACAAATCATTATTATTAACAAAGTCTCTTGCTCCATAC
CAAGAATCTAACAATGCATTTTTGGACATAGTTACATTGAATTTAGACTG
AAATGGTAACAATGCCATTACTTCAGATTCCAATCTGCTTTGAAAGCCTG
GTAACAAAGTTGGTCCACCAGTACATAAGACATTTTGCACCATTTGTGCT
TGTTTCTCTGGTGAATAGTTCTTCAGAACGTATTCAATCATGCCTGAGAT
ACCTTCCTGCTCAACACCTACAACTGAAGGCTGGTATAATATCTCAGGTA
CACGAACCTGTTCAGTATCATAAGGTAAGTGTTGGTAAACCTGACCACGC
CCAACCATAAGGCGGTTCATGGTAAGTTGGTGTTGACTCAAATGCTGCTC
AATTTCATTAAGTCGTTCTTGATCTGCTTCATCCTCAGATTcactgccat
ctttgtttatatatttataaACGTCCCAGTCCTCATCCTTCATACCAAAT
GTATCCTCCTTTTGCGCTTTCGGATTTGGATTATCCCCTTTAGCTAACTG
ACTCAAAATTCGCATGCGCTCTTTAGATGCATAACTTTTTCTCTTGCTTA
ATGCTTGTTTACGAGAATTTCTTGATCGCCTTTTATCTGTaagttgaagt
ttttcatcttcCAGGTTAGCAATCAACTTCAAAATATCATCTAAGGATAC
AgcttcttcttcactttcacAATGGTTTAAACCCATCAAATATTTACGAC
TTTTCTCTTGTCGTTCCAAAATTTTATCTTCCAATTCTTTGATGATGGTA
tgaagatcagtgtctttttgaAGACCCTCTTGTTTCAATCGCTGTTTAAA
CAAAGTCATATTGGTATACTCAAGTTCTTCAATTTCTTGGAATTTCTTCA
ATtgctctttttcatttttgattttttcttcacGCTTTTTCTGATTGATG
TCTTTTAAACGTCTCGCTTGCGTTTTTCGTAATTCCAAATCCTTCTCAGT
TGTAGTGTTAATAATAGGAAGTTGAATGGTGAGAGCCTTCTCATTAGTAA
AAGCTGCTGTTTGCCATTTTTTCAACTCTTCAAAATAATCGGAAGCAATG
TAAGAATGTCCAATAAGAAGCTCTTGAGCACGTGATAAATTAAAATTTCC
CATTTGTGTAGGATGTCTAAGTTGTAGTAATCGTCTTAAGAAAATCATCA
TGTTTAGTCCTCCTACATTAAGCCTACGACTATCAGCTGGTTTAAACTGT
CCATCAACAATAGGAAGAACATGGGAAGTCTGGTAACCACAACGTAATAT
TAACCCATCCTTAATATCAATTGATTTGTTATGGTACCAGCTTAGTAAAC
TATCAACACTGTAGATTATGTTTGGTACGGTATAACATTCAAATAACAAT
TCGGACATGTGGTCACGAAATGCATTAGGAGTACAAACAGCTTCAGTTAA
GCTAACAGGATGGTTGATGGATTCAGTATTAATACCAAGGTGTGAGAACA
TGTAATCAAAAGCAGATTCCTGTGTGTCCATATGAGATACAGTATCCATA
TCAAATTGGGTACGCACATTCCATTTCAAGTCCTCTAAATCTGTAATATC
ATTACCAAAGAATTGACTACCGGCTTCACTTTCCTTTTTACCTCTCAGTT
TGGCAATCAGGTTACGAAATAAAAGCCTTGGTTCAGCCTCGTTAGACCAT
CCTACGCGACATGAGTGGCTTCCATTATCAATAACGATGATTGGTGCTGT
CTGTTCTTTGTTTGGGTATTGGTGATATACTTCTGCAGAAAACTCTGCAT
CCTTGAAGAAGAATTTTTGTGGCATgtctatttcaaaatttttgaaacta
taTCATCAAATAGAATTTTATTTGGTAGATCTAAAACACAAAAACAGTTT
TATCACAACACTTTTAATTAATCAATTATCTGAACTAATAACCTATGtag
aaaacataaatttttctctttaaagtaAACTTTCTAAAGTTCTaagaggg
ggtttatctaaagaatcctgcatttctaaaaatagacaaaaagaacgaca
aatttcataaaaaacgacatatttcgccgtccacaaccccGACCGAAAGT
GACTGTACCACCCCTAGCGACTCATTCCCTttcgtttatcacgggaatta
actacatgtggtctaaaagaacgacaaattacgcatgcgtgttacaatgc
aggatcctttagaggaacagactgtaaG Run BLAST on NCBI protein sequence of TCONS_00053193-protein >TCONS_00053193-protein ID=TCONS_00053193-protein|Name=TCONS_00053193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=638bp
MPQKFFFKDAEFSAEVYHQYPNKEQTAPIIVIDNGSHSCRVGWSNEAEPR
LLFRNLIAKLRGKKESEAGSQFFGNDITDLEDLKWNVRTQFDMDTVSHMD
TQESAFDYMFSHLGINTESINHPVSLTEAVCTPNAFRDHMSELLFECYTV
PNIIYSVDSLLSWYHNKSIDIKDGLILRCGYQTSHVLPIVDGQFKPADSR
RLNVGGLNMMIFLRRLLQLRHPTQMGNFNLSRAQELLIGHSYIASDYFEE
LKKWQTAAFTNEKALTIQLPIINTTTEKDLELRKTQARRLKDINQKKREE
KIKNEKEQLKKFQEIEELEYTNMTLFKQRLKQEGLQKDTDLHTIIKELED
KILERQEKSRKYLMGLNHCESEEEAVSLDDILKLIANLEDEKLQLTDKRR
SRNSRKQALSKRKSYASKERMRILSQLAKGDNPNPKAQKEDTFGMKDEDW
DVYKYINKDGSESEDEADQERLNEIEQHLSQHQLTMNRLMVGRGQVYQHL
PYDTEQVRVPEILYQPSVVGVEQEGISGMIEYVLKNYSPEKQAQMVQNVL
CTGGPTLLPGFQSRLESEVMALLPFQSKFNVTMSKNALLDSWYGARDFVN
NNDLSTISISREEYEEQGAGYFKEHFCSNVFVKLDDDE Run BLAST on NCBI transcript from alignment at scaffold_226:364376..366803 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053193 ID=TCONS_00053193|Name=TCONS_00053193|organism=Clytia hemisphaerica|type=transcript|length=2428bp|location=Sequence derived from alignment at scaffold_226:364376..366803 (Clytia hemisphaerica)
Cttacagtctgttcctctaaaggatcctgcattgtaacacgcatgcgtaa
tttgtcgttcttttagaccacatgtagttaattcccgtgataaacgaaAG
GGAATGAGTCGCTAGGGGTGGTACAGTCACTTTCGGTCggggttgtggac
ggcgaaatatgtcgttttttatgaaatttgtcgttctttttgtctatttt
tagaaatgcaggattctttagataaaccccctcttAGAACTTTAGAAAGT
TtactttaaagagaaaaatttatgttttctaCATAGGTTATTAGTTCAGA
TAATTGATTAATTAAAAGTGTTGTGATAAAACTGTTTTTGTGTTTTAGAT
CTACCAAATAAAATTCTATTTGATGAtatagtttcaaaaattttgaaata
gacATGCCACAAAAATTCTTCTTCAAGGATGCAGAGTTTTCTGCAGAAGT
ATATCACCAATACCCAAACAAAGAACAGACAGCACCAATCATCGTTATTG
ATAATGGAAGCCACTCATGTCGCGTAGGATGGTCTAACGAGGCTGAACCA
AGGCTTTTATTTCGTAACCTGATTGCCAAACTGAGAGGTAAAAAGGAAAG
TGAAGCCGGTAGTCAATTCTTTGGTAATGATATTACAGATTTAGAGGACT
TGAAATGGAATGTGCGTACCCAATTTGATATGGATACTGTATCTCATATG
GACACACAGGAATCTGCTTTTGATTACATGTTCTCACACCTTGGTATTAA
TACTGAATCCATCAACCATCCTGTTAGCTTAACTGAAGCTGTTTGTACTC
CTAATGCATTTCGTGACCACATGTCCGAATTGTTATTTGAATGTTATACC
GTACCAAACATAATCTACAGTGTTGATAGTTTACTAAGCTGGTACCATAA
CAAATCAATTGATATTAAGGATGGGTTAATATTACGTTGTGGTTACCAGA
CTTCCCATGTTCTTCCTATTGTTGATGGACAGTTTAAACCAGCTGATAGT
CGTAGGCTTAATGTAGGAGGACTAAACATGATGATTTTCTTAAGACGATT
ACTACAACTTAGACATCCTACACAAATGGGAAATTTTAATTTATCACGTG
CTCAAGAGCTTCTTATTGGACATTCTTACATTGCTTCCGATTATTTTGAA
GAGTTGAAAAAATGGCAAACAGCAGCTTTTACTAATGAGAAGGCTCTCAC
CATTCAACTTCCTATTATTAACACTACAACTGAGAAGGATTTGGAATTAC
GAAAAACGCAAGCGAGACGTTTAAAAGACATCAATCAGAAAAAGCgtgaa
gaaaaaatcaaaaatgaaaaagagcaATTGAAGAAATTCCAAGAAATTGA
AGAACTTGAGTATACCAATATGACTTTGTTTAAACAGCGATTGAAACAAG
AGGGTCTtcaaaaagacactgatcttcaTACCATCATCAAAGAATTGGAA
GATAAAATTTTGGAACGACAAGAGAAAAGTCGTAAATATTTGATGGGTTT
AAACCATTgtgaaagtgaagaagaagcTGTATCCTTAGATGATATTTTGA
AGTTGATTGCTAACCTGgaagatgaaaaacttcaacttACAGATAAAAGG
CGATCAAGAAATTCTCGTAAACAAGCATTAAGCAAGAGAAAAAGTTATGC
ATCTAAAGAGCGCATGCGAATTTTGAGTCAGTTAGCTAAAGGGGATAATC
CAAATCCGAAAGCGCAAAAGGAGGATACATTTGGTATGAAGGATGAGGAC
TGGGACGTttataaatatataaacaaagatggcagtgAATCTGAGGATGA
AGCAGATCAAGAACGACTTAATGAAATTGAGCAGCATTTGAGTCAACACC
AACTTACCATGAACCGCCTTATGGTTGGGCGTGGTCAGGTTTACCAACAC
TTACCTTATGATACTGAACAGGTTCGTGTACCTGAGATATTATACCAGCC
TTCAGTTGTAGGTGTTGAGCAGGAAGGTATCTCAGGCATGATTGAATACG
TTCTGAAGAACTATTCACCAGAGAAACAAGCACAAATGGTGCAAAATGTC
TTATGTACTGGTGGACCAACTTTGTTACCAGGCTTTCAAAGCAGATTGGA
ATCTGAAGTAATGGCATTGTTACCATTTCAGTCTAAATTCAATGTAACTA
TGTCCAAAAATGCATTGTTAGATTCTTGGTATGGAGCAAGAGACTTTGTT
AATAATAATGATTTGTCGACAATTTCAATTTCCAGAGAGGAGTACGAGGA
ACAAGGAGCAGGTtattttaaagaacatttttgttCTAATGTTTTTGTAA
AGCTAGACGATGAtgaataattgtttttttttcgtattGTACGAAGATTT
ataaaaaactttgtaaactGCTCACACATTTGTCCCATTAGATTTACTTG
ACACATTTTATCCACATTTACTTCAGCA Coding sequence (CDS) from alignment at scaffold_226:364376..366803 >TCONS_00053193 ID=TCONS_00053193|Name=TCONS_00053193|organism=Clytia hemisphaerica|type=CDS|length=1917bp|location=Sequence derived from alignment at scaffold_226:364376..366803 (Clytia hemisphaerica)
ATGCCACAAAAATTCTTCTTCAAGGATGCAGAGTTTTCTGCAGAAGTATA
TCACCAATACCCAAACAAAGAACAGACAGCACCAATCATCGTTATTGATA
ATGGAAGCCACTCATGTCGCGTAGGATGGTCTAACGAGGCTGAACCAAGG
CTTTTATTTCGTAACCTGATTGCCAAACTGAGAGGTAAAAAGGAAAGTGA
AGCCGGTAGTCAATTCTTTGGTAATGATATTACAGATTTAGAGGACTTGA
AATGGAATGTGCGTACCCAATTTGATATGGATACTGTATCTCATATGGAC
ACACAGGAATCTGCTTTTGATTACATGTTCTCACACCTTGGTATTAATAC
TGAATCCATCAACCATCCTGTTAGCTTAACTGAAGCTGTTTGTACTCCTA
ATGCATTTCGTGACCACATGTCCGAATTGTTATTTGAATGTTATACCGTA
CCAAACATAATCTACAGTGTTGATAGTTTACTAAGCTGGTACCATAACAA
ATCAATTGATATTAAGGATGGGTTAATATTACGTTGTGGTTACCAGACTT
CCCATGTTCTTCCTATTGTTGATGGACAGTTTAAACCAGCTGATAGTCGT
AGGCTTAATGTAGGAGGACTAAACATGATGATTTTCTTAAGACGATTACT
ACAACTTAGACATCCTACACAAATGGGAAATTTTAATTTATCACGTGCTC
AAGAGCTTCTTATTGGACATTCTTACATTGCTTCCGATTATTTTGAAGAG
TTGAAAAAATGGCAAACAGCAGCTTTTACTAATGAGAAGGCTCTCACCAT
TCAACTTCCTATTATTAACACTACAACTGAGAAGGATTTGGAATTACGAA
AAACGCAAGCGAGACGTTTAAAAGACATCAATCAGAAAAAGCgtgaagaa
aaaatcaaaaatgaaaaagagcaATTGAAGAAATTCCAAGAAATTGAAGA
ACTTGAGTATACCAATATGACTTTGTTTAAACAGCGATTGAAACAAGAGG
GTCTtcaaaaagacactgatcttcaTACCATCATCAAAGAATTGGAAGAT
AAAATTTTGGAACGACAAGAGAAAAGTCGTAAATATTTGATGGGTTTAAA
CCATTgtgaaagtgaagaagaagcTGTATCCTTAGATGATATTTTGAAGT
TGATTGCTAACCTGgaagatgaaaaacttcaacttACAGATAAAAGGCGA
TCAAGAAATTCTCGTAAACAAGCATTAAGCAAGAGAAAAAGTTATGCATC
TAAAGAGCGCATGCGAATTTTGAGTCAGTTAGCTAAAGGGGATAATCCAA
ATCCGAAAGCGCAAAAGGAGGATACATTTGGTATGAAGGATGAGGACTGG
GACGTttataaatatataaacaaagatggcagtgAATCTGAGGATGAAGC
AGATCAAGAACGACTTAATGAAATTGAGCAGCATTTGAGTCAACACCAAC
TTACCATGAACCGCCTTATGGTTGGGCGTGGTCAGGTTTACCAACACTTA
CCTTATGATACTGAACAGGTTCGTGTACCTGAGATATTATACCAGCCTTC
AGTTGTAGGTGTTGAGCAGGAAGGTATCTCAGGCATGATTGAATACGTTC
TGAAGAACTATTCACCAGAGAAACAAGCACAAATGGTGCAAAATGTCTTA
TGTACTGGTGGACCAACTTTGTTACCAGGCTTTCAAAGCAGATTGGAATC
TGAAGTAATGGCATTGTTACCATTTCAGTCTAAATTCAATGTAACTATGT
CCAAAAATGCATTGTTAGATTCTTGGTATGGAGCAAGAGACTTTGTTAAT
AATAATGATTTGTCGACAATTTCAATTTCCAGAGAGGAGTACGAGGAACA
AGGAGCAGGTtattttaaagaacatttttgttCTAATGTTTTTGTAAAGC
TAGACGATGAtgaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053193-exon-scaffold_226-1491911889:364376..366803 | TCONS_00053193-exon-scaffold_226-1491911889:364376..366803 | Clytia hemisphaerica | exon |
| TCONS_00053193-exon-scaffold_226-1510915933:364376..366803 | TCONS_00053193-exon-scaffold_226-1510915933:364376..366803 | Clytia hemisphaerica | exon |
| TCONS_00053193-exon-scaffold_226-1575043694:364376..366803 | TCONS_00053193-exon-scaffold_226-1575043694:364376..366803 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_226 | supercontig | scaffold_226:364376..366803 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004000 | Actin |
Blast
BLAST of TCONS_00053193 vs. Swiss-Prot (Human)
Match: ARP5 (Actin-related protein 5 OS=Homo sapiens GN=ACTR5 PE=1 SV=2) HSP 1 Score: 220.705 bits (561), Expect = 1.101e-61 Identity = 115/276 (41.67%), Postives = 165/276 (59.78%), Query Frame = -2
Query: 1213 FFFKDAEFSAE-VYHQYPNKEQTAPI-IVIDNGSHSCRVGWSNEA-----EPRLLFRNLIAKLRGKKESEAGSQFFGNDITDLEDLKWNVRTQFDMDTVSHMDTQESAFDYMFSHLGINTES-INHPVSLTEAVCTPNAFRDHMSELLFECYTVPNIIYSVDSLLSWYHNKSID-IKDGLILRCGYQTSHVLPIVDGQFKPADSRRLNVGGLNMMIFLRRLLQLRHPTQMGNFNLSRAQELLIGHSYIASDYFEELKKWQTAAFTNEKALTIQLPI 2013
F F+DA + + V P P+ +V+DNGS R GW+ EPRL FR + A+ RG +G Q GN + LE L+W +R+ FD + +++ QE DY F HLG++++ ++HP+ LTEAVC P R MSELLFECY +P + Y +DSL S+YHNK + + GLI+ GYQ +HVLPI++G+ + +R+N+GG +L+RLLQL++P + LSR +E+L HSYIA DY EEL KW+ + +QLP
Sbjct: 6 FPFRDARAAPDPVLEAGPVAHGPLPVPLVLDNGSFQVRAGWACPGQDPGPEPRLQFRAVCARGRGGARGASGPQV-GNALGSLEPLRWMLRSPFDRNVPVNLELQELLLDYSFQHLGVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYGIPKVAYGIDSLFSFYHNKPKNSMCSGLIISSGYQCTHVLPILEGRLDAKNCKRINLGGSQAAGYLQRLLQLKYPGHLAAITLSRMEEILHEHSYIAEDYVEELHKWRCPDYYENNVHKMQLPF 280 HSP 2 Score: 141.354 bits (355), Expect = 5.706e-35 Identity = 63/140 (45.00%), Postives = 98/140 (70.00%), Query Frame = -2
Query: 124 VYQHLPYDTEQVRVPEILYQPSVVGVEQEGISGMIEYVLKNYSPEKQAQMVQNVLCTGGPTLLPGFQSRLESEVMALLPFQSKFNVTMSKNALLDSWYGARDF-VNNNDLSTISISREEYEEQGAGYFKEHFCSNVFVKL 540
Y L TE++R PEI++QPS++G EQ GI+ ++Y+L Y + Q +VQNV TGG T+ PG ++R+E E++ + PF+S F V ++ N +LD+WYGARD+ +N+ D + + I+R+EYEE+G Y KEH SN++V +
Sbjct: 438 AYHQLFVGTERIRAPEIIFQPSLIGEEQAGIAETLQYILDRYPKDIQEMLVQNVFLTGGNTMYPGMKARMEKELLEMRPFRSSFQVQLASNPVLDAWYGARDWALNHLDDNEVWITRKEYEEKGGEYLKEHCASNIYVPI 577
The following BLAST results are available for this feature:
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