TCONS_00053196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053196
Unique NameTCONS_00053196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053196 ID=TCONS_00053196|Name=TCONS_00053196|organism=Clytia hemisphaerica|type=transcript|length=516bp
taagaacattttaaggctttgtggactcgaaaacacacaatttcttagga
aattgcacaaaaatactcacaaaatggtgaaaataagaacattttaagaa
cattgttaggcttaaaactcaaaaagtttagaacatcggaaggcttcaaa
aattttcgacgttcttataaaaaaaaacgtgcataTGAAATTATTCGAAC
ATCATGTTATCGACACTTATCAGGTCCGATCTTGCGAGCAACGCAACGTT
TAGAGTGTCGGTTTTATACGTCATTAGCACTATGTGTCCTGAGCAAAAAC
TCGTCCAAGACTGGTAAAGCCAAGCGGAGGTTTTCCTTGGATTGGTCCTG
TTCTATTACAAGGAAGGTTTATCTCGCTGTATATGAACCATCTTTGAAGC
ACACGGGGAAGAGCAAATTTTCCAAGCTCACGATAGCGGACGCTGTCCTG
GGACTTGAGTCTGTTTTGTTACAAGGAAGGCTCATCTTCCTGTACGTGGG
GTCAACCATATAGCAC
Run BLAST on NCBI

transcript from alignment at scaffold_226:569183..569698

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053196 ID=TCONS_00053196|Name=TCONS_00053196|organism=Clytia hemisphaerica|type=transcript|length=516bp|location=Sequence derived from alignment at scaffold_226:569183..569698 (Clytia hemisphaerica)
GTGCTATATGGTTGACCCCACGTACAGGAAGATGAGCCTTCCTTGTAACA
AAACAGACTCAAGTCCCAGGACAGCGTCCGCTATCGTGAGCTTGGAAAAT
TTGCTCTTCCCCGTGTGCTTCAAAGATGGTTCATATACAGCGAGATAAAC
CTTCCTTGTAATAGAACAGGACCAATCCAAGGAAAACCTCCGCTTGGCTT
TACCAGTCTTGGACGAGTTTTTGCTCAGGACACATAGTGCTAATGACGTA
TAAAACCGACACTCTAAACGTTGCGTTGCTCGCAAGATCGGACCTGATAA
GTGTCGATAACATGATGTTCGAATAATTTCAtatgcacgtttttttttat
aagaacgtcgaaaatttttgaagccttccgatgttctaaactttttgagt
tttaagcctaacaatgttcttaaaatgttcttattttcaccattttgtga
gtatttttgtgcaatttcctaagaaattgtgtgttttcgagtccacaaag
ccttaaaatgttctta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033579XLOC_033579Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053196-exon-scaffold_226-1491911889:569183..569698TCONS_00053196-exon-scaffold_226-1491911889:569183..569698Clytia hemisphaericaexon
TCONS_00053196-exon-scaffold_226-1510915933:569183..569698TCONS_00053196-exon-scaffold_226-1510915933:569183..569698Clytia hemisphaericaexon
TCONS_00053196-exon-scaffold_226-1575043694:569183..569698TCONS_00053196-exon-scaffold_226-1575043694:569183..569698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:569183..569698 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.934998	0.998737	1.45121	0.768074	0	0	0	0.278751	0.684102	0.13016	0	0.692677	0.331904	0	0.394731	0.506775	0.0867525	0.266755	0.875478	0.388928	0.227754	0.817488	0.132502	0.726738	0	0	0.163235	0.339093	0.516939	0.394397
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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