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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053208 ID=TCONS_00053208|Name=TCONS_00053208|organism=Clytia hemisphaerica|type=transcript|length=3576bp
CCCATATTAGAAACTCATACGTGTTAAATTTACAATTGTAAAAGAAAGTG
TACTCTGGGCGGGAGGGGGGGCCAACTAACGACTTGTGAAGACTGAATTC
AGACAGCCGAATAAGTAACACGTGTAAGAGGCTATTCAGCGGAACGCTGA
CGACTATTTTGCGGAACACTCAAAATACACATATATTGCGGAACAATCTA
TCTAAAGCTATTTTGCGGAACGCTCAAAATAAATccatttattttctaat
tcgttAATTCGAAAACTCAATCGAAAATAACttcatttatttttcgttca
acACAATATCTTTATATATCTTTCTCAATAGTAGCAGCCGTCTAGTTACA
TGTACCACGTCAAAGAAGCATGAAAAAGGCAGTTCTAAACGCCAGAAACG
ataaattctctcaaaaataaaataaaaattgattttattcaaaaccTAAA
TTAAGTGAAACTGTCAACAAATCCTCCAGTTTATCTTTGACATATCCATC
CTTAATTTTTTCCGACTTCCACCTTCCGTGGTTTTGGAACAGCCTATCCG
GAACCCCGTTCCTTGCTGCTTCCGTCGCACCTCCTGATCTGAGACTGTGC
AGCCCAAAGAGTTTTTCGTTCAAGCCTATGCCTTTAATTAGATCTAGCAC
GTGTAGTCTTGCGGTTGAGTAGCTTAttggtttgtttttctttctgagTT
TGTGTATACCCTTTGATTTAAAAAAGCTTAATCCTCTAAACAGAAATTCG
TCATGGAGTTCGATACCCGCTCTCGTGATGTATATGTTTAAGGTTTTCAC
CGGACAAATTTCTGAGAcagtttttgcaataaatacCCAATGACCTTCTC
TATATTGGTCGGTCTTGCTCTGTTCAATAAAAAGCCGCATAAAAGTAGGC
TCAAAAACGATATCCCCCAGGGTTAAATTTGACACTTCAGAATATCTCAG
AAAACCAGCGAAGCTAACAACCATGAGTGTAAAATTGGGAAAGTCTAGTA
GAGTGGATTCTTTCTTACCAacgttttcgaaaatttttgtaagATGTTCG
AATAGAAAAGGTTCCTTTTTCTTGGTTTGTCTATTGTTCATTCTTTTTGC
TGCCTCTACAATATAGTCAACCAAGCTGTTACACGTAGGGTCGAGCGCAC
CGGCAAACACGTGATAATGCTTGATTGCGAATAGTGTACTTTCGATTACG
GAGTACGACTTGTTTTCNCGTGATGATGCTTGATTGCGAATAGTGTACTT
TCGATTACGGAGTACGACTTGTTTTCTTGAATTAGACTGGTGAGATAAAG
TGACACGTATATTGATTCTACAGGAAAAAGAGTTATCTCGTTGAAGTTGG
CTGCCCAGGATTCCCATTGACTGAAGTAGGTGTCGTACTTCTGCAAAGTC
GAGTTTGCTCTTGATCGAATCAGGATGTTTGGAGTTTTTGCTGCGAGATC
TTTCAATCGCTGGTCGTTAACGTTTTCACAGATGTTTGCTGCTGTTGTCA
TAGCTAGAAGTAAGCAAAGATTATGCCCAAATTAATTGGTGTAcatgaat
tttcttttaaatagaGTGTTTGTATTTAGGACTGCAACCGCTAAGCAGCC
GGACAACCAACTGTTGTCTACCCATTGCAACTGCTATGCAATCTCAACAG
CAACCACCTTGCTATTGTCTCTCCACCAACTGTGGCAGTAAAATTTAATG
AAGACGAATTATACACATGTATTGATCTTAAGGGCCCATAGGCCAACATG
AAAGTCCTTCGACCCTAGTAAGGCCGACTTAAACATCCCATGCCTTAGGA
CTTGAGACGAATCATCGATAAATAAAGAATCAGTGATAAATTTTGCAAAA
GCTCCGTCCTTTTGAATGACAGCCCAAAATGCCTTAGAAGTCCAGTGTGG
GATAATTAATGTACCAACAATATTCTCAGACtgctctaattttttcaaaa
ctctcaAGATATCATTCACGGGTGGGACAAGTAAGTTGTTTTCACCGCTC
CAGTTTTGCAAAAATGCGTCAACAGCTTCTGTGTTTGGAACATAAAATTT
GGAATTAAAGCGCTCAAGCTTAGTGTTATAGTGGTTTGCAGATCTATCGA
TTGAAAACGGTCCCCAAAGGCTGATAAGATAGTCGAAAAAGTCATTTGAT
AATTGCCAATCATCGACGTCAATTATTTTAGAGATGTAATCTGCTACTTC
GTTCTCTTTTCTTGGGATCCATTGGACTTTTAAATCGATGTTGTTAAATC
TAGATATTTCGTAGATTTCAATCGCTAAGTCATGCAATTCAGATTTTTTA
CTGCCCGATTTGACTATCAAAGATACAGCGTTATTGTCTGTTTTCCATTC
AATACACGAATTTTTAAGTGACTCTTTAAACGAAATTAAGGCGAATCTAA
TTCCCTCTAGCTCCCTCCAAGTTGAACTCCTTCCTTGTTCCCACGGACTA
AAATTCTTGTGACAAATAAAATTATTGTTTGCTATAATAGAACCAATCGC
ATGATCACTGGCATccgaaaaaacaaaagaattgatgATTCTTTCTGATG
AAATAGGTTTCTTATTCAGTCTTTTGCTATTGTCTCTCCAGAAAATGACT
TCTTTTACAACTTCTTCATGATCTGAGATTTTTAAGAACGAGTCCCAAGA
GTATTGGCTATCAATTAGTTTGTATAGAAATCTTGTCTTTAAGCGTACAA
TgtcagaaaaaacaaattttgttgaaaCGACTTTTCCTGCAAGACGTGAA
AGAGATCGTGCTGTTGTGTATTGACATGATAAgactttttcacattgatc
aAGAAGAGATTGGATCCGCTTGCTCGAAACATGACCAACAGAATCCCAAA
AATTCTTGATGATTTTCAAAGATGTCAACGTGATAGTACCCTTGGCGGAG
AtcgaatttgaaaagaaaaccgTTCGGTCTTACGTAATGCTGAAAATCCC
TCAAGTCGTCGAAAGATACGAACTCTTTATGCAAATGATCGTTTACATAA
CGCAAGTCTAGAATGAATCGCTTCTTCCCCACAGAGTTGGTAGCAACCGA
TAAAGGGCTCACGATATAGGGCTTGTGTTTTAACTTCTCGGATCATCCCA
GACAAAATTAAATCATCGATTGTGCTCGAGACAAAATCCGAAGCTGAAAT
TGCTGATtggttgttttgaaaagactttgGCTTTGGTGTGTTTATAAATG
GAAGCTTGTAGCCATTTTTAATTGTGTTAATAATAAAATTAGAAGCTCCG
ACTTCTAACCATTTTTTAATGTGTCTTTTTAAATTGCCTTTTACTTTGTT
TCCCTCTAAGGGATTGACATTTTGTAAATCAGTAGCCTCTAAGGACTTac
tattttcaaagttttgtgtTTCTATCTCTAAGGAATTTTGAGTTTCAAAG
CTTTCTTCTTCCTCTAAggaatcaaataaatttttgttgactTGATTTTG
TTTCGAAGAGCTCAGTCgttgatgaaaaaaaacacttatCTTTAGTTGTC
GTCTTCTTCTTTTGGTTGTTTTGTGCATGATCTTTTCCAATGGCCTTTTC
CTCCACATTGTAGACATATATCTGTG Run BLAST on NCBI transcript from alignment at scaffold_227:257542..261432+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053208 ID=TCONS_00053208|Name=TCONS_00053208|organism=Clytia hemisphaerica|type=transcript|length=3891bp|location=Sequence derived from alignment at scaffold_227:257542..261432+ (Clytia hemisphaerica)
CCCATATTAGAAACTCATACGTGTTAAATTTACAATTGTAAAAGAAAGTG
TACTCTGGGCGGGAGGGGGGGCCAACTAACGACTTGTGAAGACTGAATTC
AGACAGCCGAATAAGTAACACGTGTAAGAGGCTATTCAGCGGAACGCTGA
CGACTATTTTGCGGAACACTCAAAATACACATATATTGCGGAACAATCTA
TCTAAAGCTATTTTGCGGAACGCTCAAAATAAATccatttattttctaat
tcgttAATTCGAAAACTCAATCGAAAATAACttcatttatttttcgttca
acACAATATCTTTATATATCTTTCTCAATAGTAGCAGCCGTCTAGTTACA
TGTACCACGTCAAAGAAGCATGAAAAAGGCAGTTCTAAACGCCAGAAACG
ataaattctctcaaaaataaaataaaaattgattttattcaaaaccTAAA
TTAAGTGAAACTGTCAACAAATCCTCCAGTTTATCTTTGACATATCCATC
CTTAATTTTTTCCGACTTCCACCTTCCGTGGTTTTGGAACAGCCTATCCG
GAACCCCGTTCCTTGCTGCTTCCGTCGCACCTCCTGATCTGAGACTGTGC
AGCCCAAAGAGTTTTTCGTTCAAGCCTATGCCTTTAATTAGATCTAGCAC
GTGTAGTCTTGCGGTTGAGTAGCTTAttggtttgtttttctttctgagTT
TGTGTATACCCTTTGATTTAAAAAAGCTTAATCCTCTAAACAGAAATTCG
TCATGGAGTTCGATACCCGCTCTCGTGATGTATATGTTTAAGGTTTTCAC
CGGACAAATTTCTGAGAcagtttttgcaataaatacCCAATGACCTTCTC
TATATTGGTCGGTCTTGCTCTGTTCAATAAAAAGCCGCATAAAAGTAGGC
TCAAAAACGATATCCCCCAGGGTTAAATTTGACACTTCAGAATATCTCAG
AAAACCAGCGAAGCTAACAACCATGAGTGTAAAATTGGGAAAGTCTAGTA
GAGTGGATTCTTTCTTACCAacgttttcgaaaatttttgtaagATGTTCG
AATAGAAAAGGTTCCTTTTTCTTGGTTTGTCTATTGTTCATTCTTTTTGC
TGCCTCTACAATATAGTCAACCAAGCTGTTACACGTAGGGTCGAGCGCAC
CGGCAAACACGTGATAATGCTTGATTGCGAATAGTGTACTTTCGATTACG
GAGTACGACTTGTTTTCNCGTGATGATGCTTGATTGCGAATAGTGTACTT
TCGATTACGGAGTACGACTTGTTTTCTTGAATTAGACTGGTGAGATAAAG
TGACACGTATATTGATTCTACAGGAAAAAGAGTTATCTCGTTGAAGTTGG
CTGCCCAGGATTCCCATTGACTGAAGTAGGTGTCGTACTTCTGCAAAGTC
GAGTTTGCTCTTGATCGAATCAGGATGTTTGGAGTTTTTGCTGCGAGATC
TTTCAATCGCTGGTCGTTAACGTTTTCACAGATGTTTGCTGCTGTTGTCA
TAGCTAGAAGTAAGCAAAGATTATGCCCAAATTAATTGGTGTAcatgaat
tttcttttaaatagaGTGTTTGTATTTAGGACTGCAACCGCTAAGCAGCC
GGACAACCAACTGTTGTCTACCCATTGCAACTGCTATGCAATCTCAACAG
CAACCACCTTGCTATTGTCTCTCCACCAACTGTGGCAGTAAAATTTAATG
AAGACGAATTATACACATGTATTGATCTTAAGGGCCCATAGGCCAACATG
AAAGTCCTTCGACCCTAGTAAGGCCGACTTAAACATCCCATGCCTTAGGA
CTTGAGACGAATCATCGATAAATAAAGAATCAGTGATAAATTTTGCAAAA
GCTCCGTCCTTTTGAATGACAGCCCAAAATGCCTTAGAAGTCCAGTGTGG
GATAATTAATGTACCAACAATATTCTCAGACtgctctaattttttcaaaa
ctctcaAGATATCATTCACGGGTGGGACAAGTAAGTTGTTTTCACCGCTC
CAGTTTTGCAAAAATGCGTCAACAGCTTCTGTGTTTGGAACATAAAATTT
GGAATTAAAGCGCTCAAGCTTAGTGTTATAGTGGTTTGCAGATCTATCGA
TTGAAAACGGTCCCCAAAGGCTGATAAGATAGTCGAAAAAGTCATTTGAT
AATTGCCAATCATCGACGTCAATTATTTTAGAGATGTAATCTGCTACTTC
GTTCTCTTTTCTTGGGATCCATTGGACTTTTAAATCGATGTTGTTAAATC
TAGATATTTCGTAGATTTCAATCGCTAAGTCATGCAATTCAGATTTTTTA
CTGCCCGATTTGACTATCAAAGATACAGCGTTATTGTCTGTTTTCCATTC
AATACACGAATTTTTAAGTGACTCTTTAAACGAAATTAAGGCGAATCTAA
TTCCCTCTAGCTCCCTCCAAGTTGAACTCCTTCCTTGTTCCCACGGACTA
AAATTCTTGTGACAAATAAAATTATTGTTTGCTATAATAGAACCAATCGC
ATGATCACTGGCATccgaaaaaacaaaagaattgatgATTCTTTCTGATG
AAATAGGTTTCTTATTCAGTCTTTTGCTATTGTCTCTCCAGAAAATGACT
TCTTTTACAACTTCTTCATGATCTGAGATTTTTAAGAACGAGTCCCAAGA
GTATTGGCTATCAATTAGTTTGTATAGAAATCTTGTCTTTAAGCGTACAA
TgtcagaaaaaacaaattttgttgaaaCGACTTTTCCTGCAAGACGTGAA
AGAGATCGTGCTGTTGTGTATTGACATGATAAgactttttcacattgatc
aAGAAGAGATTGGATCCGCTTGCTCGAAACATGGTAAGAATTTTTGTTGA
GATCTATCACTATGCCCAACAAGGTTAAAACTTTCGTAGGCGCCCATAGG
GATTTTTCTATGTTTATGATGAAACCACATTCGACCTAGTAGACTTTTCA
CGGCAAGTGAACTTTCCTCCGACTCCTCAAAGGTTTGGGCTGTCCCACAG
CCGTCGTCGAGAAAGACTGAAATTTTTATACCCTGTTTGTGCCACGCTCT
TACAAGTACTCTCAAAAGCTTTGTGAAAAGACAGGGGGCTGTAGACAAGC
CAAAAGGTAAGACTGTGAAAacataatatttcttttctttatttccAGAC
CAACAGAATCCCAAAAATTCTTGATGATTTTCAAAGATGTCAACGTGATA
GTACCCTTGGCGGAGAtcgaatttgaaaagaaaaccgTTCGGTCTTACGT
AATGCTGAAAATCCCTCAAGTCGTCGAAAGATACGAACTCTTTATGCAAA
TGATCGTTTACATAACGCAAGTCTAGAATGAATCGCTTCTTCCCCACAGA
GTTGGTAGCAACCGATAAAGGGCTCACGATATAGGGCTTGTGTTTTAACT
TCTCGGATCATCCCAGACAAAATTAAATCATCGATTGTGCTCGAGACAAA
ATCCGAAGCTGAAATTGCTGATtggttgttttgaaaagactttgGCTTTG
GTGTGTTTATAAATGGAAGCTTGTAGCCATTTTTAATTGTGTTAATAATA
AAATTAGAAGCTCCGACTTCTAACCATTTTTTAATGTGTCTTTTTAAATT
GCCTTTTACTTTGTTTCCCTCTAAGGGATTGACATTTTGTAAATCAGTAG
CCTCTAAGGACTTactattttcaaagttttgtgtTTCTATCTCTAAGGAA
TTTTGAGTTTCAAAGCTTTCTTCTTCCTCTAAggaatcaaataaattttt
gttgactTGATTTTGTTTCGAAGAGCTCAGTCgttgatgaaaaaaaacac
ttatCTTTAGTTGTCGTCTTCTTCTTTTGGTTGTTTTGTGCATGATCTTT
TCCAATGGCCTTTTCCTCCACATTGTAGACATATATCTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053208-exon-scaffold_227-1491911889:257542..260374 | TCONS_00053208-exon-scaffold_227-1491911889:257542..260374 | Clytia hemisphaerica | exon |
| TCONS_00053208-exon-scaffold_227-1510915933:257542..260374 | TCONS_00053208-exon-scaffold_227-1510915933:257542..260374 | Clytia hemisphaerica | exon |
| TCONS_00053208-exon-scaffold_227-1575043694:257542..260374 | TCONS_00053208-exon-scaffold_227-1575043694:257542..260374 | Clytia hemisphaerica | exon |
| TCONS_00053208-exon-scaffold_227-1491911889:260690..261432 | TCONS_00053208-exon-scaffold_227-1491911889:260690..261432 | Clytia hemisphaerica | exon |
| TCONS_00053208-exon-scaffold_227-1510915933:260690..261432 | TCONS_00053208-exon-scaffold_227-1510915933:260690..261432 | Clytia hemisphaerica | exon |
| TCONS_00053208-exon-scaffold_227-1575043694:260690..261432 | TCONS_00053208-exon-scaffold_227-1575043694:260690..261432 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_227 | supercontig | scaffold_227:257542..261432 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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