TCONS_00053224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053224
Unique NameTCONS_00053224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2029

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053224 ID=TCONS_00053224|Name=TCONS_00053224|organism=Clytia hemisphaerica|type=transcript|length=2029bp
tgtcttccacggacccaacagctgattggttgaaagtgacgtatttattc
cttttacgtcacttacaaccaatcagctattggggcTGTAAAATATTGTC
AGATGaaattgcagtggtgcatatcgcGAATATAAATAGACCTGGATCTG
GAAAAATGATAATCACTTCAAAATCATTCGGAAGCTGCAAACAAATTGAA
GAatgatgaaagaaaattttttgctaATTTGTGTTTTTGTACAACTGGCT
GCTTCATTCGATGCAgGAAACACTTACATTGATTGTGTCAAGACAACCAA
AAGACCTCGTTCATGTGCAAGATATCGGAACGTTCAAAAGAGTTATCGCA
GATTTGATGGACTTTGCAACAATCTCAGATTCCCAACTGTTGGTGCTATC
GACACGCCTTTCAGGAGACTCTTGCGGGCAGATTATGTTGACCGTCGAAA
AGTAGATACGCCACGAGGATTCCCTGGAACAAAACCTTCAAACATCCCAG
CTGCAAACAAAGTTTCAATAGCTGCCTTCACACCTCAATTCGTGAATGCA
GGAAATGCTGGAAAATTGTCTACATTGTTTACAACTGCTGGACAATTCTT
GGATCATGACATGACGGTATCAAACCATGGCAAATGTAATATCAAAGAct
gTAGCTCAAATTCCGCCTTCAAGTATCCATGCTTCCCAATCAAGTTTGAC
GATGGAACATCAAAATGTACGCCTTTCGTCCGTGCATTTGCTGCATGCCA
ATCAGCATCTCCAAGCAGAAGAAGACAAAGACAACAAGTGAACACTATAA
CAGCATTTGTTGATGGATCGCAAATCTATGGACATAATGCGCGTTTGGCA
CGATCATTGCGTAAGCTTGATGGTAGTGGTCAATTAAGAACCAGAAGAGG
TGATCTTATACCTCTGAAGAGGTTAACAACTCCATGTGATCTTCTAGTGG
GTTGTTCCCTGGCTGGTGATATCAGAGCTGACGAAAACATTGCTCTACAC
TCAATGCATACCGTTTGGGTACGCGAGCACAACAGAGTAGCTTCCCAACT
AAGATTATTTAACTACCATTGGAGAGAAGAGAAGCTATACCAGGAAGCTA
GAAAGATTGTTATCGCTGAATGGCAACATGTTGTTTTCAATGAATGGGTA
CCTCGAATTGTTGATCTTGGAAGATATAGAAGATATAACTCGAAATTGAA
CCCCAGCATTATTAATGCATTTGCAACAGCTGCTTTCAGATTCGGTCACA
GTCTAGCACCAAACGCATGGAGTCAACTTGACAATAATTTTGATATGAAG
TTTGAAAAGATCAGTCTTCGAGAATCTTTCTTTAACATTCAAAGCATCAA
TCAGAGAGGAATTGAACCAACCATGTTTGGTCTTGTTGGAAATCAATCAA
ACACAGTCGACGATGTGTTCGCTTTTGGATTGCTCCGGAAATTATTTGTC
CCACCTGGTGAAGAAGGCCATATGGATTTGACAGCATTCAACATCCAAAG
GGGTCGTGACCATGGATTGCCAACATACGGACGCTGGAGAAGATACTGCA
GACTACCGGCCATCACAAATTTCCGTCAACTGGCCAGAGTGATGCCAAGA
GAAGTTGCCCAAAAGTTCTCAACCCTGTATAAGAAGCCAGCAGATATTGA
TCTCTTTGCGGCTGGCATTTCAGAGCACCATGTGCGAGGCTTCCAAACAG
GTCCCACCTTCCAATGTCTGTTTCGTCGGCAATTCGAACGCCTGAGGGAT
GGTGATCGTTATTATTATCTCAACCGTGGAGTTTTTACACCAAAACAACG
GAATGAATTGAAGAAGACCTCAATGGCGAAAATCCTGTGTGACAACTTGA
AAGGAATAGTCTCAATCAACAAAGATGCTTTCATCCAGACTTCAAAGAAA
CGCACGCCTTGTAACAATATCCGTGGACCAGATCTTAGTGTTTTCTGAAC
TGATATCTCCATCATTTAGAAGCTGTACTATTTTAATAAATTGCAATGTC
AACCTTTTTTTTCAGTTCATCTTTGAggg
Run BLAST on NCBI

transcript from alignment at scaffold_227:364320..369425+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053224 ID=TCONS_00053224|Name=TCONS_00053224|organism=Clytia hemisphaerica|type=transcript|length=5106bp|location=Sequence derived from alignment at scaffold_227:364320..369425+ (Clytia hemisphaerica)
tgtcttccacggacccaacagctgattggttgaaagtgacgtatttattc
cttttacgtcacttacaaccaatcagctattggggcTGTAAAATATTGTC
AGATGaaattgcagtggtgcatatcgcGAATATAAATAGACCTGGATCTG
GAAAAATGATAATCACTTCAAAATCATTCGGAAGCTGCAAACAAATTGAA
GAatgatgaaagaaaattttttgctaATTTGTGTTTTTGTACAACTGGCT
GCTTCATTCGATGCAggtattgaaattgaaatatccgaacTATGGAATTT
TATCTCTGTATATACCTATATAGAATCTTTAGTAGAAAAACTGAATAAcg
aaatacacccctgtctcacgactttttttttgccaaatcatCTAGTGGGA
GGGGGGTCCAACTAGCTCTGTGACAGGGagtgtgaaaattttttcaactt
tttcagtttttcaattttatgtaAATCACTCAAGCAGAAGAAGTTTAGAA
GGTTGACAAAAATTAGAACAAAAATAGATGTACGGATAAGAATTGTGGTT
TCATAATTGGAACTTTGAAGCGCAAAAAGTTTATTAATATTGAACAATTC
TAAGTTACCATTAGTTTTGCATCAAATCTCAATTACAgttttttatttat
catttcAGGAAACACTTACATTGATTGTGTCAAGACAACCAAAAGACCTC
GTTCATGTGCAAGATATCGGAACGTTCAAAAGAGTTATCGCAGATTTGAT
GGACTTTGCAACAATCTCAGATTCCCAACTGTTGGTGCTATCGACACGCC
TTTCAGGAGACTCTTGCGTGAGTTATAACCTCATATTTAATCCTCATTGG
AAAAACACTAAATTCCGATTATCATCATTCTTTTTAAGATCTATATTTTC
TGCAGCGTGTCATAGTTTAATTGAGGCCTTCGATCAGGTTTACCGAAAGA
AATAATACTGAAAAACGTGAAAGTTTCCTGGACAGTATGAAAATAAGTTC
TTATACAGGGTTCTTTATAAATGAGGATTACTTGATAACATTCTAATAAC
TACCAAATTCGCAACAAGAGCTAGTTGCActcctttttgattttactgat
taACACGTTCGTACCATAAGtgttataagaaacaaattaaGGAGTGGGGT
TTGAGTTTCCGTATTTATTTCACCCAGGATTTTAGCGTTTAaggttttaa
acaaaaaagctTAGCTAAGTAAAAGTCACTTCTCAATGTTTTTCTAATTA
TCCTTGTTTTAATTTCAGGGGCAGATTATGTTGACCGTCGAAAAGTAGAT
ACGCCACGAGGATTCCCTGGAACAAAACCTTCAAACATCCCAGCTGCAAA
CAAAGTTTCAATAGCTGCCTTCACACCTCAATTCGTGAATGCAGGAAATG
CTGGAAAATTGTCTACATTGTTTACAACTGCTGGACAATTCTTGGATCAT
GACATGACGGTATCAAACCATGGCAAATGTAATATCAAAGAGTAAGCTAA
TTAgacaaatatttgaaatgtctTAAAATTAAGAAGTGAAGAAAAGCATA
TCTCAACAAGAACAACTGCGCTTAATAACATTATCAAGAATCTGTTTATC
AGCAGACAACATATGAAAGTCAATAAATCACAAGGCTTATTTTATATGGT
AGAATTTACTACTTTTCCCTAAGCTcttcgaaaaaaacttttgccgACAG
TGTGTCTTTTATTAGCGATTTTATGtagagggggtttatctaaagaatcc
tgcattactaaaaacaGGCAAAACGagcgacaaatttcataaaaaacgac
atatttcgccgtctACAACCCCGatcgaaagtgactgtaccacgcCTATC
GATTCATTCCCCTTCGTTTATCAGGGGAaataactacatgtggtttaaaa
agaacgacaaattacacttgcgtgttacaatgcaggattctttagaggaa
cagattggtatttgcacttttgaggaagTTTTAACCCACAAAATCGAgaa
cggtaaaagtgctgattcaCCATTGTCCTTAGCTGGTCAGGATTTACTCA
aatagaaccttaccgtctttGTCGCAGAAAAAGTTTTCTAATTGTTTGGC
AGTTACATTTTTCCCTTTCAAATCTTAGCTGTAGTTGTTTATGTGTagta
tattatttttatttttcaaattttagctgTAGCTCAAATTCCGCCTTCAA
GTATCCATGCTTCCCAATCAAGTTTGACGATGGAACATCAAAATGTACGC
CTTTCGTCCGTGCATTTGCTGCATGCCAATCAGCATCTCCAAGCAGAAGA
AGACAAAGACAACAAGTGAACACTATAACAGCATTTGTTGATGGATCGCA
AATCTATGGACATAATGCGCGTTTGGCACGATCATTGCGTAAGCTTGATG
GTAAGTGGATGTACCTACCTTATTCATAACTTCGatccttttttttttac
aacCACGTCTCACAGCACTGGGCAGGCTAATGACATCCACAAGTggacta
aagtctattcacgataagtgtgcactcttttttcttttacctataacttt
tgaaggaattcttcaatctttataaatttggtattatcggaaagatatta
gtgagtggaacaatttaaaataaaaaatcttcaaaaaaattctaaaaatg
aagatgaaaatgaagaagaaaaaatgaagatcttgtagaaaagtgcttta
actttcattttcactggagagattttttgatcttagggaatcatcactgt
gaaaaaatttcattaaaatatttattcaatataaagttatgatacaaagt
taataagtgattgaccccaaaaaacagcaaaaaactgcNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatttttttcttct
tcattctcatcttcatttttagaatttttttaaatatttttttatttcaa
attattccactcactaatatcattccgatgataccaaatttataaggatt
aaagaattccttcaaaaattataggtaaatgaaaaaagagtgcacactta
tcgtgaatagactttagatctCTTTATCAATATATTATTGGCATTTTTGT
AGAGGTTTTTGATTCAGGCTAAGGACTGGATGGATctaaatagaccttat
cggagtttttttcctaaaaaagcgatgcattgtgggattgttttacTCGC
TGAAAGAATTCAGCAAAGAGATCTTTCCCCTATGAGAAGAGCACCCTGAA
AATTTATCTGCATTAAGAACTACGCTGAACTCTCATCCTTACTGGGAAAG
ATGCTTATAAGTTTGTATCCACATCTCCATTGGCATTTAAATTCCTACTA
GGTAGGAAAATCTAAGTAGATTGCTTAAATGGATTGGGGTGTTTCTTTAA
ATATCTTCAAGGCTATccatttaaaatgtaaaaacttATTATCTTGCAGG
TAGTGGTCAATTAAGAACCAGAAGAGGTGATCTTATACCTCTGAAGAGGT
TAACAACTCCATGTGATCTTCTAGTGGGTTGTTCCCTGGCTGGTGATATC
AGAGCTGACGAAAACATTGCTCTACACTCAATGCATACCGTTTGGGTACG
CGAGCACAACAGAGTAGCTTCCCAACTAAGATTATTTAACTACCATTGGA
GAGAAGAGAAGCTATACCAGGAAGCTAGAAAGATTGTTATCGCTGAATGG
CAACATGTTGTTTTCAATGAATGGGTACCTCGAATTGTTGATCTTGGAAG
ATATAGAAGATATAACTCGAAATTGAACCCCAGCATTATTAATGCATTTG
CAACAGCTGCTTTCAGATTCGGTCACAGTCTAGCACCAAACGCATGGAGT
CAACTTGACAATAATTTTGATATGAAGTTTGAAAAGATCAGTCTTCGAGA
ATCTTTCTTTAACATTCAAAGCATCAATCAGAGAGGAATTGAACCAACCA
TGTTTGGTCTTGTTGGAAATCAATCAAACACAGTCGACGATGTGTTCGCT
TTTGGATTGCTCCGGAAATTATTTGTCCCACCTGGTGAAGAAGGCCATAT
GGATTTGACAGCATTCAACATCCAAAGGGGTCGTGACCATGGATTGCCAA
CATACGGACGCTGGAGAAGATACTGCAGACTACCGGCCATCACAAATTTC
CGTCAACTGGCCAGAGTGATGCCAAGAGAAGTTGCCCAAAAGTTCTCAAC
CCTGTATAAGAAGCCAGCAGATATTGATCTCTTTGCGGCTGGCATTTCAG
AGCACCATGTGCGAGGCTTCCAAACAGGTCCCACCTTCCAATGTCTGTTT
CGTCGGCAATTCGAACGCCTGAGGGATGGTGATCGTTATTATTATCTCAA
CCGTGGAGTTTTTACACCAAAACAACGGAATGAATTGAAGAAGACCTCAA
TGGCGAAAATCCTGTGTGACAACTTGAAAGGAATAGTCTCAATCAACAAA
GATGCTTTCATCCAGACTTCAAAGAAACGCACGCCTTGTAACAATATCCG
TGGACCAGATCTTAGTGTTTTCTGAACTGATATCTCCATCATTTAGAAGC
TGTACTATTTTAATAAATTGCAATGTCAACCTTTTTTTTCAGTTCATCTT
TGAggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033595XLOC_033595Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053224-exon-scaffold_227-1491911889:364320..364585TCONS_00053224-exon-scaffold_227-1491911889:364320..364585Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1510915933:364320..364585TCONS_00053224-exon-scaffold_227-1510915933:364320..364585Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1575043694:364320..364585TCONS_00053224-exon-scaffold_227-1575043694:364320..364585Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1491911889:364978..365136TCONS_00053224-exon-scaffold_227-1491911889:364978..365136Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1510915933:364978..365136TCONS_00053224-exon-scaffold_227-1510915933:364978..365136Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1575043694:364978..365136TCONS_00053224-exon-scaffold_227-1575043694:364978..365136Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1491911889:365588..365810TCONS_00053224-exon-scaffold_227-1491911889:365588..365810Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1510915933:365588..365810TCONS_00053224-exon-scaffold_227-1510915933:365588..365810Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1575043694:365588..365810TCONS_00053224-exon-scaffold_227-1575043694:365588..365810Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1491911889:366496..366719TCONS_00053224-exon-scaffold_227-1491911889:366496..366719Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1510915933:366496..366719TCONS_00053224-exon-scaffold_227-1510915933:366496..366719Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1575043694:366496..366719TCONS_00053224-exon-scaffold_227-1575043694:366496..366719Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1491911889:368269..369425TCONS_00053224-exon-scaffold_227-1491911889:368269..369425Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1510915933:368269..369425TCONS_00053224-exon-scaffold_227-1510915933:368269..369425Clytia hemisphaericaexon
TCONS_00053224-exon-scaffold_227-1575043694:368269..369425TCONS_00053224-exon-scaffold_227-1575043694:368269..369425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:364320..369425 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.897695	1.32132	0.56294	0.76468	0	0	0	0	0.0164376	0.0814255	0	0.0249011	212.173	158.773	26.8162	42.6919	4.6161	11.3945	0.574214	1.68052	0.018877	0	0.0692083	0	0.502505	0.195132	0.0329511	0	0.0642086	0
Blast
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BLAST of TCONS_00053224 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 2.629e-92
Identity = 208/559 (37.21%), Postives = 288/559 (51.52%), Query Frame = 2 
Query:  335 QKSYRRFDGLCNNLRFPTVGAIDTPFRRLLRADYVDRRKVDTPRGFPGTKPSN---IPAANKVSIAAFTPQFVNAGNAGKLSTLFTTAGQFLDHDM--TVSNHGKCNIKD---CSSNSAFKYPCFPIKFDDGTSK------CTPFVRAF----XXXXXXXXXXXXXXXXVNTITAFVDGSQIYGHNARLARSLRKLDGS-GQLRT----RRGDLIPLKRLTT--PCDLL-------VGCSLAGDIRADENIALHSMHTVWVREHNRVASQLRLFNYHWREEKLYQEARKIVIAEWQHVVFNEWVPRIV------DLGRYRRYNSKLNPSIINAFATAAFRFGHSLAPNAWSQLDNNFD-MKFEKISLRESFFN-IQSINQRGIEPTMFGLVG--NQSNTVDDVFAFGLLRKLFVPPGEEGHMDLTAFNIQRGRDHGLPTYGRWRRYCRLPAITNFRQLA-RVMPREVAQKFSTLYKKPADIDLFAAGISEHHVRGFQTGPTFQCLFRRQFERLRDGDRYYYLNRGVFTPKQRNELKKTSMAKILCDNLKGIVSINKDAF 1882
             + YR  DG CNNL+ P  GA  T F RLL++ Y      +TPRG    +  N   +P    VS      + V      + + +    GQFLDHD+  TV    +    D   CS+  +   PCF +      S+      C  FVR+     +   S   +    R+Q+N +T+++D S +YG     ARS+R L    G LR     R G   PL    T  P + +       + C LAGD RA+E + L SMHT+W REHNR+A++L   N HW  + +Y E RKIV AE QH+ +  W+P+I+       LG Y  Y+  +N  I NAFATAAFRFGH+L      +LD NF  +  + + L ++FF+  + +N+ GI+P + GL G   +      +    L  +LF        +DL A NIQRGRDHG+P Y  +R YC L A   F  L   +   E+ +K   LY    +IDLF A + E  V G + GPT  CL   QF+RLRDGDR +Y N GVF+P Q  ++K+TS+A+ILCDN   I  +  D F
Sbjct:  738 HQKYRTHDGTCNNLQHPMWGASLTAFERLLKSVY--ENGFNTPRGINPHRLYNGHALPMPRLVSTTLIGTETVTPDE--QFTHMLMQWGQFLDHDLDSTVVALSQARFSDGQHCSNVCSNDPPCFSVMIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYPREQINQLTSYIDASNVYGSTEHEARSIRDLASHRGLLRQGIVQRSGK--PLLPFATGPPTECMRDENESPIPCFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPHWDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRVPSQLLNTELTERLFSM-AHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNEIKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVF 1289
The following BLAST results are available for this feature:
BLAST of TCONS_00053224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PXDN2.629e-9237.21Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 S... [more]
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