TCONS_00053235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053235
Unique NameTCONS_00053235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053235 ID=TCONS_00053235|Name=TCONS_00053235|organism=Clytia hemisphaerica|type=transcript|length=267bp
CGCGTTTTACGGAAACCTTCAAAAGTCAGTACAATTTGGATGTGACAGCT
GGCATTATAAAGCAAGTCAAGGACACTGGGCTAGGTTTCCAGGAAACTCA
AATATTCAGTGCAGCAAAGCACACTACACAAACTTAAGGCGCTCAGCTTT
GGAGAAGGATGATGCTCCGGCTAAACGTAAAAGGAATTCCAGACGAGACA
GAGTAAGtataatatttttgtaatcCATCATACCATTACATTAATACATT
AATACATAACGTGTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_227:130520..131222-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053235 ID=TCONS_00053235|Name=TCONS_00053235|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at scaffold_227:130520..131222- (Clytia hemisphaerica)
CGCGTTTTACGGAAACCTTCAAAAGTCAGTACAATTTGGATGTGACAGCT
GGCATTATAAAGCAAGTCAAGGACACTGGGCTAGGTTTCCAGGAAACTCA
AATATTCAGTAAGTTCTAGTTCTATTCATTAACGTACATCATTATGATGT
AATGAATGTAAGAATTTCTTAATTTTACTCCGCATAGCCATTCATTTTTA
TCTTTCCTTTTTGACTGGTATTATTAATCATTTCTGTAAGGCAATTGATC
AATTGTGATTTTAATTTCTCTGATATATACTCTATGGGTGAGGGTCAATG
TAAATACAGCCAAAGTATGAAAGCTAGAATCAGTTGCAGGTTTTCCTTCA
TCAAGTGAGCACATCAAAAGAAATTAGAAAGAGCAAGATCATCAGACAGA
CTAAACCCAACACCAGATGCAAAGTCATATTGTTTAATAACCATCTTGTA
TAAGCCAAAAATCTTTTATCTTTGATTTTGAATTCACTTTTCATCAAGCA
AACAATGACCAGATAATTGAATTATCAATTTCTCTTTTTAACAGGTGCAG
CAAAGCACACTACACAAACTTAAGGCGCTCAGCTTTGGAGAAGGATGATG
CTCCGGCTAAACGTAAAAGGAATTCCAGACGAGACAGAGTAAGTATAATA
TTTTTGTAATCCATCATACCATTACATTAATACATTAATACATAACGTGT
GAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033600XLOC_033600Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053235-exon-scaffold_227-1575043694:131115..131222TCONS_00053235-exon-scaffold_227-1575043694:131115..131222Clytia hemisphaericaexon
TCONS_00053235-exon-scaffold_227-1575043694:130520..130678TCONS_00053235-exon-scaffold_227-1575043694:130520..130678Clytia hemisphaericaexon
TCONS_00053235-exon-scaffold_227-1510915933:131115..131222TCONS_00053235-exon-scaffold_227-1510915933:131115..131222Clytia hemisphaericaexon
TCONS_00053235-exon-scaffold_227-1510915933:130520..130678TCONS_00053235-exon-scaffold_227-1510915933:130520..130678Clytia hemisphaericaexon
TCONS_00053235-exon-scaffold_227-1491911889:131115..131222TCONS_00053235-exon-scaffold_227-1491911889:131115..131222Clytia hemisphaericaexon
TCONS_00053235-exon-scaffold_227-1491911889:130520..130678TCONS_00053235-exon-scaffold_227-1491911889:130520..130678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:130520..131222 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.0586	10.3857	6.69933	3.27712	1.59583	0	3.8035	5.69727	19.944	11.7343	22.7792	20.0969	12.5923	15.9379	8.7354	14.4222	30.2038	20.9421	3.77383	7.89808	14.3018	9.20821	4.07047	6.78452	19.6932	12.4731	12.1697	12.122	9.1941	9.36733
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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