|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053236 ID=TCONS_00053236|Name=TCONS_00053236|organism=Clytia hemisphaerica|type=transcript|length=733bp
AGCGAAAATCAGTAATTGACTGGTGGGAACGTCTAGCGAGGGGTTTATTT
TGTTTGCCAAAAAGATGGAAATTCAGATAATCCTGGATAAATTTTAGTTA
TATTTCTACATACAAATAAGACTAAATAACAAAACACAAATTCTTTGACA
CATGTCTCTCCTAACAGAACAaagGTAACTAAAATTATTATAAACAGTAA
ATTTATTGTCAACTGCTGCCTTctaagaaaataaactttttaacaACTTA
CAATATACAAATATGAAAAAGAACTGGGATAGTGCATGCTGTTCCCAAAA
AAATGACCTTTATCAAAAGTGTTGACATCTGCATATTGAACATCAAATAA
TTTTATAGGGGGTATTCTTCACACTTACACCACGATACATCCATGTTATG
ATTTATTTACATTATATCTGCTACATAAACGCATAATTACCAAAACATAT
ATATTAATATAATAAAAAGcctattgaatttgaaaaaagaaagtttagaa
gttcTGTTTCAAGAAGAATTGCTCACGATTacgcaaaaaaaaagacaaac
ttTCACGTTCGCGCAACTCTTTTCTATTGACGCTATACACACCGGTGTCA
CAGACCTGGTGGAGCCCTAAACCACTGGAAAATCTTTGCTTAAATCTTTT
TCCCGATGTTTGAAAATGCTCCGCCGGGGCTGTGAGATGGGGGTGTTTAT
ACatagaaaaaacaaatttatttcttACGAAAA Run BLAST on NCBI transcript from alignment at scaffold_227:266762..267685- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053236 ID=TCONS_00053236|Name=TCONS_00053236|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at scaffold_227:266762..267685- (Clytia hemisphaerica)
AGCGAAAATCAGTAATTGACTGGTGGGAACGTCTAGCGAGGGGTTTATTT
TGTTTGCCAAAAAGATGGAAATTCAGATAATCCTGGATAAATTTTAGTTA
TATTTCTACATACAAATAAGACTAAATAACAAAACACAAATTCTTTGACA
CATGTCTCTCCTAACAGAACAAAGCTACCTTATCGGGGAAAACTTCTTCG
GGGAAAATTTTCGTCGGTGAAAATTTTCGTCGGGGAAAAATTCGTCACTT
GCTGGTAGTTGGTAAACGCATTAAGGCCGGGGAAAATATTCGTCACTTTT
GTCCAAAATTTCGTCACTTGTCCAAAATTTCGTCACTTTTCCCCGACGAA
GTTTTCCCCGATAGGGTAACTAAAATTATTATAAACAGTAAATTTATTGT
CAACTGCTGCCTTCTAAGAAAATAAACTTTTTAACAACTTACAATATACA
AATATGAAAAAGAACTGGGATAGTGCATGCTGTTCCCAAAAAAATGACCT
TTATCAAAAGTGTTGACATCTGCATATTGAACATCAAATAATTTTATAGG
GGGTATTCTTCACACTTACACCACGATACATCCATGTTATGATTTATTTA
CATTATATCTGCTACATAAACGCATAATTACCAAAACATATATATTAATA
TAATAAAAAGCCTATTGAATTTGAAAAAAGAAAGTTTAGAAGTTCTGTTT
CAAGAAGAATTGCTCACGATTACGCAAAAAAAAAGACAAACTTTCACGTT
CGCGCAACTCTTTTCTATTGACGCTATACACACCGGTGTCACAGACCTGG
TGGAGCCCTAAACCACTGGAAAATCTTTGCTTAAATCTTTTTCCCGATGT
TTGAAAATGCTCCGCCGGGGCTGTGAGATGGGGGTGTTTATACATAGAAA
AAACAAATTTATTTCTTACGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053236-exon-scaffold_227-1575043694:267513..267685 | TCONS_00053236-exon-scaffold_227-1575043694:267513..267685 | Clytia hemisphaerica | exon |
| TCONS_00053236-exon-scaffold_227-1575043694:266762..267321 | TCONS_00053236-exon-scaffold_227-1575043694:266762..267321 | Clytia hemisphaerica | exon |
| TCONS_00053236-exon-scaffold_227-1510915933:267513..267685 | TCONS_00053236-exon-scaffold_227-1510915933:267513..267685 | Clytia hemisphaerica | exon |
| TCONS_00053236-exon-scaffold_227-1510915933:266762..267321 | TCONS_00053236-exon-scaffold_227-1510915933:266762..267321 | Clytia hemisphaerica | exon |
| TCONS_00053236-exon-scaffold_227-1491911889:267513..267685 | TCONS_00053236-exon-scaffold_227-1491911889:267513..267685 | Clytia hemisphaerica | exon |
| TCONS_00053236-exon-scaffold_227-1491911889:266762..267321 | TCONS_00053236-exon-scaffold_227-1491911889:266762..267321 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_227 | supercontig | scaffold_227:266762..267685 - |
Blast
The following BLAST results are available for this feature:
|
