TCONS_00053249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053249
Unique NameTCONS_00053249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053249 ID=TCONS_00053249|Name=TCONS_00053249|organism=Clytia hemisphaerica|type=transcript|length=552bp
CTTTATTAGAGAAAAAAGGGCGCACagttttccaaaatcttttattGTCA
GTGATTTGCTTTTCATCCAGAGATTCATAAAATCTTCTTTTAGTGTTTCT
CAGTAGATATAAGCATCGGTTTCGCTGTTGGTTGTAATTATATTTGTTGA
TGTTAGAGGGGTCTTTTCGTTTAATGTCGAGATCGATGCACCATGGCCTT
TCGTAGTGATTTTGTCATGAAAGGTTTATCATTACCTCTtagtattttag
tttttatcggTGCTTCAGCGTTTAGAAGATTTACTAcacttttcatttta
tgttcAAAGTTGCGATTCGACTCTAGTACTTGTgttaaatgatttttgaa
aagatcttcGTTAAGATTTTTGTAGCATCTATATTTAATGGCTTTAGGTG
GACACTTCTCAAAAGTGGTTTTTAAGACGCTTATTGTGATGTTGTGAAAG
TCCGATAGGCTATTAGATACAGAGGAAGAGCCCTGAAAACTTCTTTGGTA
ATTTGTTAGCATCAGATCAATGCATTTCGGATTTTCTGCGTTTTTGAAGC
AC
Run BLAST on NCBI

transcript from alignment at scaffold_227:125720..126271

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053249 ID=TCONS_00053249|Name=TCONS_00053249|organism=Clytia hemisphaerica|type=transcript|length=552bp|location=Sequence derived from alignment at scaffold_227:125720..126271 (Clytia hemisphaerica)
GTGCTTCAAAAACGCAGAAAATCCGAAATGCATTGATCTGATGCTAACAA
ATTACCAAAGAAGTTTTCAGGGCTCTTCCTCTGTATCTAATAGCCTATCG
GACTTTCACAACATCACAATAAGCGTCTTAAAAACCACTTTTGAGAAGTG
TCCACCTAAAGCCATTAAATATAGATGCTACAAAAATCTTAACgaagatc
ttttcaaaaatcatttaacACAAGTACTAGAGTCGAATCGCAACTTTgaa
cataaaatgaaaagtgTAGTAAATCTTCTAAACGCTGAAGCAccgataaa
aactaaaatactaAGAGGTAATGATAAACCTTTCATGACAAAATCACTAC
GAAAGGCCATGGTGCATCGATCTCGACATTAAACGAAAAGACCCCTCTAA
CATCAACAAATATAATTACAACCAACAGCGAAACCGATGCTTATATCTAC
TGAGAAACACTAAAAGAAGATTTTATGAATCTCTGGATGAAAAGCAAATC
ACTGACaataaaagattttggaaaactGTGCGCCCTTTTTTCTCTAATAA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033611XLOC_033611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053249-exon-scaffold_227-1491911889:125720..126271TCONS_00053249-exon-scaffold_227-1491911889:125720..126271Clytia hemisphaericaexon
TCONS_00053249-exon-scaffold_227-1510915933:125720..126271TCONS_00053249-exon-scaffold_227-1510915933:125720..126271Clytia hemisphaericaexon
TCONS_00053249-exon-scaffold_227-1575043694:125720..126271TCONS_00053249-exon-scaffold_227-1575043694:125720..126271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:125720..126271 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19903	1.32441	4.07434	2.84173	1.65862	1.63259	1.33357	1.54713	0.391389	0.563776	0.599014	0.525773	1.03137	0.832871	0.688092	0.647815	0.711399	0.460645	0.395359	1.25018	1.26519	1.64623	0	0.775294	1.43531	1.75144	1.03534	1.42561	1.15761	0.291094
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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