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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053254 ID=TCONS_00053254|Name=TCONS_00053254|organism=Clytia hemisphaerica|type=transcript|length=2842bp
NTTGCCAGTAGGTTTGAGAGAAAGATGGAATCGTGAATCGTTTTCTTTAA
GGCTCAGAGAAAAAAGAGAGGCTGCTCTTAAAGATATTCTTGTGTTTGTT
GAAAAGGAGGCTACTTTGGCAAGTGATCCactcttttcaaaagaagctAT
GGGCGAACGTGAAAACCTTGATAAGCCACAAGAAAGATCCGGTGGCGGGA
AGAAACTTAGAAATTTCGGTGTGAAGATTCAGTGTGAGAATTGTAACTCT
GATCATCCTCTTGAAAAGTGTCATTCATTCAAACGGTTGAAACCTCGTGA
TAAATTCCagctgcttttgaaaaaaacgtaTTTGTTTTGCTTGTTTAGAA
ACTGGCATCGTTGCAAATCAAAAAAGCCCTGCAGCTTATGTAATGGTCGT
CAGGCTACTTGTTTGCATACCATCTTTGTGAAATCTGATAACGATTTGAA
GTCTGAAAATTTTCCTAAGTCCGATAGTGATAATAAGTCTTCTCAGCCTG
AGAGAGATATAAAATCTGAAACTTCTGAAACGCATGGTTGTGTTAAGCCA
AGCCCTAGTGTCATTCAGCCTGGAGTGAAAGTGAAGAAAAGTTTTACAAC
TGCTTGTTCGGATTCAATAAATATGTGTATTGTTCCAATTGTTGTGCGTC
ATTCTGACTCTAAGTATGATTTCAAAACTTATGCTCTGCTTGATTCGTGT
AGCCAAGGCACTCTCATTCACCAAGATCTACTTAGTCAATTATCTGTTCC
ATCCACTGAAACTAAGCTTGCTGTTTCTACTCTCACTGGCTTTGAATATA
CAAATTCTCATTTAGTGTCTAATCTTTCTGTAAAAGGACAGTATGGAAAG
TATTCGTGTTGGATTGATTTGCCATCAGCTTATAGTCGTGATGATATTGA
TGTGATGAGTAATGAAATGGCAACACCTGAATCATTGAAGCGTTGGCCCT
ACCTGCAAGGAATCGTTAGTGAAGTTGGAAAGGTTGAAAGTGATGAAAAG
GTTGGGTTGATTATTGGTGCGAATTGTCCTAAGGCTTTAGAACCTCATGA
AGTTATAAAGAGTGAAGGTTACGGTCCATACGCCTATTTGACGAAGTTAG
GCTGGTGTGTTGTTGGTCCGAAGGAAGATGATACTCATCCAAATGTTTTA
TCTTGTCACAGAATTGGGGTCTCCGAAGTTGTTCAGAGATTTGTGCCAAA
GAATCAGTTACATGATCATTCCATTGAAGATATGATGAAAAAATTGTATG
AAATTGAACATGTCGATTTAATACCTGGGAATTTGCCTGATAAGGTTTCT
CAAgaagatttgaaatttattaaGATCATGGATGAAagaatctcttttga
aaaaggtCATTACATCATTCCTTTTCCATTTCGTGATGAAAAGGATTTAC
CTTCTAACAATAGGAATATGGCTATGAAAAGGTTAGAATCTTTGAAACGA
AAGCTACAATTGAATTCTGAATTCAAATGTGATTACTTGGAATATTTTGA
CCTCATGCTCAAAGCTCAAATCCAACTATGCTAGGAAAATCGATGATAGT
GATATATCTGATAATGATTGTTGGTACATACCCCATCATGGTGTTTATCA
TCcaacaaaaaataagattcGTGTTGTGTTTGATCTGAGTGCAAAGTGCA
ATGGTACTTCTTTAAATCGCTGTCTACTACAGGGTCCTGATTTGACAAAT
AAGCTTATTGGTGTCTTAACAAGATTTCGTGAAAACCCTCTTGCTGTGAC
CGGTGGNTTGATCTGAGTGCAAAGTGCAATGGTACTTCTTTAAATCGCTG
TCTACTACAGGGTCCTGATTTGACAAATAAGCTTATTGGTGTCTTAACAA
GATTTCGTGAAAACCCTGTTGCTGTGACCGGTGacattgaaaaaatgttt
taccagGTGAAGTTACCTATTGTTGATAGAAAATATGTTAGATTTCTATG
GTGGGAGGATGGTAACGTGGAAAATCCTATCTCGACTTATGAGATGACCG
TTCATCCTTTTGGAGCCACCTCCTCTCCTAGTGTCTGTTCCTATGCTTTA
AAAAGGACTGCTAAGGAAAACGAGTCTTTGTTTGGATCTGAAGCCAAATG
TTCTGttgaaagagatttttttatgtTGATGATTTCTTAAAGTCTTACNT
CTCCTAGTGTCTGTTCCTATGCTTTAAAAAGGACTGCTAAGGAAAACGAG
TCTTTGTTTGGATCTGAAGCCAAATGTTCTGTTGAAAGAGATTTTTATGT
TGATGATTTCTTAAAGTCTTATCCTTCTGTTGAAATTGCTCGTTCTTCTG
TCAAGTCTATTTCTGACATGTGTATGAAAGGTAGTTTTCATTTGACTAAA
TTTGTAAGTAGTCATCCTGAATGTTTGAGTGAGCTTTCTTCAGATGATGT
TAAATCTGACTCTGTTTCATACGATGTTCCATCGGATAAAGAGTTGACTG
AAAAATTGTTAGGTGTGACCTGGGACATTGGCTCTGACAAATTCGTTTTC
AAGATTAATTTGAAGTCTACTCCATCGACGAAGAGAGGAATGTTATCTAC
TTTAAGCAGTATTTATTATCCAATTGGTGTGTTATCTCCATTTCTGCTAG
AGGGAAAACGTATTCTGCAAGGTCTTTCCAAGTACAGTTGGGATTCAGTT
TTACAAGACGAAATTGCTAACAAATGGGAATCTTGGAAATCTTCTTTGCC
TTGCATTGAATCTTTATCTTTGCCACGTCGTTTCAATCAAGGAGATAATT
CCATTCGAAATGCTTCAGTACACCATTTTTCAGATGCTAGTGATGTTGGG
TATGGTCATTGTAGCTATTTGCGTCTCATCGATGTGGCTGTA Run BLAST on NCBI protein sequence of TCONS_00053254-protein >TCONS_00053254-protein ID=TCONS_00053254-protein|Name=TCONS_00053254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
LPVGLRERWNRESFSLRLREKREAALKDILVFVEKEATLASDPLFSKEAM
GERENLDKPQERSGGGKKLRNFGVKIQCENCNSDHPLEKCHSFKRLKPRD
KFQLLLKKTYLFCLFRNWHRCKSKKPCSLCNGRQATCLHTIFVKSDNDLK
SENFPKSDSDNKSSQPERDIKSETSETHGCVKPSPSVIQPGVKVKKSFTT
ACSDSINMCIVPIVVRHSDSKYDFKTYALLDSCSQGTLIHQDLLSQLSVP
STETKLAVSTLTGFEYTNSHLVSNLSVKGQYGKYSCWIDLPSAYSRDDID
VMSNEMATPESLKRWPYLQGIVSEVGKVESDEKVGLIIGANCPKALEPHE
VIKSEGYGPYAYLTKLGWCVVGPKEDDTHPNVLSCHRIGVSEVVQRFVPK
NQLHDHSIEDMMKKLYEIEHVDLIPGNLPDKVSQEDLKFIKIMDERISFE
KGHYIIPFPFRDEKDLPSNNRNMAMKRLESLKRKLQLNSEFKCDYLEYFD
LMLKAQIQLC Run BLAST on NCBI transcript from alignment at scaffold_227:142829..145670 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053254 ID=TCONS_00053254|Name=TCONS_00053254|organism=Clytia hemisphaerica|type=transcript|length=2842bp|location=Sequence derived from alignment at scaffold_227:142829..145670 (Clytia hemisphaerica)
TACAGCCACATCGATGAGACGCAAATAGCTACAATGACCATACCCAACAT
CACTAGCATCTGAAAAATGGTGTACTGAAGCATTTCGAATGGAATTATCT
CCTTGATTGAAACGACGTGGCAAAGATAAAGATTCAATGCAAGGCAAAGA
AGATTTCCAAGATTCCCATTTGTTAGCAATTTCGTCTTGTAAAACTGAAT
CCCAACTGTACTTGGAAAGACCTTGCAGAATACGTTTTCCCTCTAGCAGA
AATGGAGATAACACACCAATTGGATAATAAATACTGCTTAAAGTAGATAA
CATTCCTCTCTTCGTCGATGGAGTAGACTTCAAATTAATCTTGAAAACGA
ATTTGTCAGAGCCAATGTCCCAGGTCACACCTAACAATTTTTCAGTCAAC
TCTTTATCCGATGGAACATCGTATGAAACAGAGTCAGATTTAACATCATC
TGAAGAAAGCTCACTCAAACATTCAGGATGACTACTTACAAATTTAGTCA
AATGAAAACTACCTTTCATACACATGTCAGAAATAGACTTGACAGAAGAA
CGAGCAATTTCAACAGAAGGATAAGACTTTAAGAAATCATCAACATAAAA
ATCTCTTTCAACAGAACATTTGGCTTCAGATCCAAACAAAGACTCGTTTT
CCTTAGCAGTCCTTTTTAAAGCATAGGAACAGACACTAGGAGANGTAAGA
CTTTAAGAAATCATCAacataaaaaaatctctttcaaCAGAACATTTGGC
TTCAGATCCAAACAAAGACTCGTTTTCCTTAGCAGTCCTTTTTAAAGCAT
AGGAACAGACACTAGGAGAGGAGGTGGCTCCAAAAGGATGAACGGTCATC
TCATAAGTCGAGATAGGATTTTCCACGTTACCATCCTCCCACCATAGAAA
TCTAACATATTTTCTATCAACAATAGGTAACTTCACctggtaaaacattt
tttcaatgtCACCGGTCACAGCAACAGGGTTTTCACGAAATCTTGTTAAG
ACACCAATAAGCTTATTTGTCAAATCAGGACCCTGTAGTAGACAGCGATT
TAAAGAAGTACCATTGCACTTTGCACTCAGATCAANCCACCGGTCACAGC
AAGAGGGTTTTCACGAAATCTTGTTAAGACACCAATAAGCTTATTTGTCA
AATCAGGACCCTGTAGTAGACAGCGATTTAAAGAAGTACCATTGCACTTT
GCACTCAGATCAAACACAACACgaatcttattttttgttgGATGATAAAC
ACCATGATGGGGTATGTACCAACAATCATTATCAGATATATCACTATCAT
CGATTTTCCTAGCATAGTTGGATTTGAGCTTTGAGCATGAGGTCAAAATA
TTCCAAGTAATCACATTTGAATTCAGAATTCAATTGTAGCTTTCGTTTCA
AAGATTCTAACCTTTTCATAGCCATATTCCTATTGTTAGAAGGTAAATCC
TTTTCATCACGAAATGGAAAAGGAATGATGTAATGacctttttcaaaaga
gattctTTCATCCATGATCttaataaatttcaaatcttcTTGAGAAACCT
TATCAGGCAAATTCCCAGGTATTAAATCGACATGTTCAATTTCATACAAT
TTTTTCATCATATCTTCAATGGAATGATCATGTAACTGATTCTTTGGCAC
AAATCTCTGAACAACTTCGGAGACCCCAATTCTGTGACAAGATAAAACAT
TTGGATGAGTATCATCTTCCTTCGGACCAACAACACACCAGCCTAACTTC
GTCAAATAGGCGTATGGACCGTAACCTTCACTCTTTATAACTTCATGAGG
TTCTAAAGCCTTAGGACAATTCGCACCAATAATCAACCCAACCTTTTCAT
CACTTTCAACCTTTCCAACTTCACTAACGATTCCTTGCAGGTAGGGCCAA
CGCTTCAATGATTCAGGTGTTGCCATTTCATTACTCATCACATCAATATC
ATCACGACTATAAGCTGATGGCAAATCAATCCAACACGAATACTTTCCAT
ACTGTCCTTTTACAGAAAGATTAGACACTAAATGAGAATTTGTATATTCA
AAGCCAGTGAGAGTAGAAACAGCAAGCTTAGTTTCAGTGGATGGAACAGA
TAATTGACTAAGTAGATCTTGGTGAATGAGAGTGCCTTGGCTACACGAAT
CAAGCAGAGCATAAGTTTTGAAATCATACTTAGAGTCAGAATGACGCACA
ACAATTGGAACAATACACATATTTATTGAATCCGAACAAGCAGTTGTAAA
ACTTTTCTTCACTTTCACTCCAGGCTGAATGACACTAGGGCTTGGCTTAA
CACAACCATGCGTTTCAGAAGTTTCAGATTTTATATCTCTCTCAGGCTGA
GAAGACTTATTATCACTATCGGACTTAGGAAAATTTTCAGACTTCAAATC
GTTATCAGATTTCACAAAGATGGTATGCAAACAAGTAGCCTGACGACCAT
TACATAAGCTGCAGGGCTTTTTTGATTTGCAACGATGCCAGTTTCTAAAC
AAGCAAAACAAAtacgtttttttcaaaagcagctGGAATTTATCACGAGG
TTTCAACCGTTTGAATGAATGACACTTTTCAAGAGGATGATCAGAGTTAC
AATTCTCACACTGAATCTTCACACCGAAATTTCTAAGTTTCTTCCCGCCA
CCGGATCTTTCTTGTGGCTTATCAAGGTTTTCACGTTCGCCCATagcttc
ttttgaaaagagtGGATCACTTGCCAAAGTAGCCTCCTTTTCAACAAACA
CAAGAATATCTTTAAGAGCAGCCTCTCTTTTTTCTCTGAGCCTTAAAGAA
AACGATTCACGATTCCATCTTTCTCTCAAACCTACTGGCAAN Coding sequence (CDS) from alignment at scaffold_227:142829..145670 >TCONS_00053254 ID=TCONS_00053254|Name=TCONS_00053254|organism=Clytia hemisphaerica|type=CDS|length=1533bp|location=Sequence derived from alignment at scaffold_227:142829..145670 (Clytia hemisphaerica)
CTAGCATAGTTGGATTTGAGCTTTGAGCATGAGGTCAAAATATTCCAAGT
AATCACATTTGAATTCAGAATTCAATTGTAGCTTTCGTTTCAAAGATTCT
AACCTTTTCATAGCCATATTCCTATTGTTAGAAGGTAAATCCTTTTCATC
ACGAAATGGAAAAGGAATGATGTAATGacctttttcaaaagagattctTT
CATCCATGATCttaataaatttcaaatcttcTTGAGAAACCTTATCAGGC
AAATTCCCAGGTATTAAATCGACATGTTCAATTTCATACAATTTTTTCAT
CATATCTTCAATGGAATGATCATGTAACTGATTCTTTGGCACAAATCTCT
GAACAACTTCGGAGACCCCAATTCTGTGACAAGATAAAACATTTGGATGA
GTATCATCTTCCTTCGGACCAACAACACACCAGCCTAACTTCGTCAAATA
GGCGTATGGACCGTAACCTTCACTCTTTATAACTTCATGAGGTTCTAAAG
CCTTAGGACAATTCGCACCAATAATCAACCCAACCTTTTCATCACTTTCA
ACCTTTCCAACTTCACTAACGATTCCTTGCAGGTAGGGCCAACGCTTCAA
TGATTCAGGTGTTGCCATTTCATTACTCATCACATCAATATCATCACGAC
TATAAGCTGATGGCAAATCAATCCAACACGAATACTTTCCATACTGTCCT
TTTACAGAAAGATTAGACACTAAATGAGAATTTGTATATTCAAAGCCAGT
GAGAGTAGAAACAGCAAGCTTAGTTTCAGTGGATGGAACAGATAATTGAC
TAAGTAGATCTTGGTGAATGAGAGTGCCTTGGCTACACGAATCAAGCAGA
GCATAAGTTTTGAAATCATACTTAGAGTCAGAATGACGCACAACAATTGG
AACAATACACATATTTATTGAATCCGAACAAGCAGTTGTAAAACTTTTCT
TCACTTTCACTCCAGGCTGAATGACACTAGGGCTTGGCTTAACACAACCA
TGCGTTTCAGAAGTTTCAGATTTTATATCTCTCTCAGGCTGAGAAGACTT
ATTATCACTATCGGACTTAGGAAAATTTTCAGACTTCAAATCGTTATCAG
ATTTCACAAAGATGGTATGCAAACAAGTAGCCTGACGACCATTACATAAG
CTGCAGGGCTTTTTTGATTTGCAACGATGCCAGTTTCTAAACAAGCAAAA
CAAAtacgtttttttcaaaagcagctGGAATTTATCACGAGGTTTCAACC
GTTTGAATGAATGACACTTTTCAAGAGGATGATCAGAGTTACAATTCTCA
CACTGAATCTTCACACCGAAATTTCTAAGTTTCTTCCCGCCACCGGATCT
TTCTTGTGGCTTATCAAGGTTTTCACGTTCGCCCATagcttcttttgaaa
agagtGGATCACTTGCCAAAGTAGCCTCCTTTTCAACAAACACAAGAATA
TCTTTAAGAGCAGCCTCTCTTTTTTCTCTGAGCCTTAAAGAAAACGATTC
ACGATTCCATCTTTCTCTCAAACCTACTGGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053254-exon-scaffold_227-1491911889:142829..145670 | TCONS_00053254-exon-scaffold_227-1491911889:142829..145670 | Clytia hemisphaerica | exon |
| TCONS_00053254-exon-scaffold_227-1510915933:142829..145670 | TCONS_00053254-exon-scaffold_227-1510915933:142829..145670 | Clytia hemisphaerica | exon |
| TCONS_00053254-exon-scaffold_227-1575043694:142829..145670 | TCONS_00053254-exon-scaffold_227-1575043694:142829..145670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_227 | supercontig | scaffold_227:142829..145670 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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