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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053277 ID=TCONS_00053277|Name=TCONS_00053277|organism=Clytia hemisphaerica|type=transcript|length=1497bp
acaaactacACTAAACTTACGAACAATGGATGTTTAATTCTAAAAAATCT
TTTATACAACAATCAAAAGATTTGTGCTAAAGAGAAAAACAATTTGCAAT
ATTTTGTATGTTATAAAATCATCAACATGCTGCTGTTTGTTTTCCTTTTG
TCTTTCAGTGTACAGAAACATTTGGTCAAAGCCAGTGAGGATGCTACCAA
CGATGAGATTCTTCATGATGATCGACCGATCATCGGCATCTTATCGCAAA
AAATCACGGAAGAGTTCACACCGTACGTAACCCACGATTCCACTTATATT
GCTGCTTCTTATGTGAAATGGATCGAAGGCGCCGGTGCACAAGTTATACC
CATTCTCTCTACTTACtctaaaaagaaagttttgaaattgGTTCGATCAA
TCAACGGTGTCCTGTTCCCTGGAGGAGCTGCACCATTAAATGATTCGAAT
TACGCCAGAGCTGCAAGATGGATTTTCAATGAAGCCATACGTATTAATGA
TTTTGAAAAGCGACCTTTCCCTCTCTGGGGTACGTGTCTTGGATTTGAAG
TATTGAATGTTTTAGGAAGTGGGTTAAGCCCTAATGAAATATTATCTGAA
TACGATTCTGAGAATTTACTTTTGGAAATTGATTTTACCAAAGAAGCGTT
TGACAGTCGTTTGTTTCACACGATTGATATGGGATTGATGAGGAAAATGA
TGTTCAAGAAATTGTCCCTTCACATGCACCAGGCTGGCATTAACCCTGAT
GTCTATGAGAAGAATTCACGGATTCGAAAAATGTTTAAAGTGTTAGCATC
CAATTTGGATAAAAAGGGGAAAGAATTTGTGTCTGTGATTGAAGGTAGAA
AGTATCCTTTTTACGGCACTCAATTCCACCCCGAAAAGAACATATATGAA
TGGACGAGAAACGAGAAAATCAACCATTCCCCAGATGCTATACTAGCTGC
TCAATATTTCGCTAATTTCTTTGTCAATGAAGCTCGTAAAAGTTACATCG
AAAATATGCCAGTGCGACGGTTGAAACACCTTGAAGATCATTTGATGTTT
CGATATTCTCCAGTATATTCAGGAGGTTCAAGTCTTTTCGAGCAAGTTTA
CACATTTAAAAATCAAACCATCAATAACAGAATCAAAGCTAAAGGGAAtg
ctttataattttttatgcATCTTAGACTATTTATGATAAACATTCATAAG
TTTTATGGTACTGTAGTTTAACTTTTCAAcggacattttttgtttatatt
aggTGATCCTGgttattttttttctgtaagcatactttttttataagaat
ggtgtttttctatttcatcattgatattctcaactttttggtcatcctga
aatattcttagggtattcttaggttaggactCATAACCAACCAAGATACC
TCACGCGAAactttggcatttttgtgaaacttTCTAGCTATGATGGGAAA
AAATTGGCAATTTGCAGGTATAATGCTCTAAAAATTCTTAGTTCCAG Run BLAST on NCBI protein sequence of TCONS_00053277-protein >TCONS_00053277-protein ID=TCONS_00053277-protein|Name=TCONS_00053277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
TNYTKLTNNGCLILKNLLYNNQKICAKEKNNLQYFVCYKIINMLLFVFLL
SFSVQKHLVKASEDATNDEILHDDRPIIGILSQKITEEFTPYVTHDSTYI
AASYVKWIEGAGAQVIPILSTYSKKKVLKLVRSINGVLFPGGAAPLNDSN
YARAARWIFNEAIRINDFEKRPFPLWGTCLGFEVLNVLGSGLSPNEILSE
YDSENLLLEIDFTKEAFDSRLFHTIDMGLMRKMMFKKLSLHMHQAGINPD
VYEKNSRIRKMFKVLASNLDKKGKEFVSVIEGRKYPFYGTQFHPEKNIYE
WTRNEKINHSPDAILAAQYFANFFVNEARKSYIENMPVRRLKHLEDHLMF
RYSPVYSGGSSLFEQVYTFKNQTINNRIKAKGNAL Run BLAST on NCBI transcript from alignment at scaffold_228:185957..189951+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053277 ID=TCONS_00053277|Name=TCONS_00053277|organism=Clytia hemisphaerica|type=transcript|length=3995bp|location=Sequence derived from alignment at scaffold_228:185957..189951+ (Clytia hemisphaerica)
acaaactacACTAAACTTACGAACAATGGATGTTTAATTCTAAAAAATCT
TTTATACAACAATCAAAAGATTTGTGCTAAAGAGAAAAACAATTTGCAAT
ATTTTGTATGTTATAAAATCATCAACATGCTGCTGTTTGTTTTCCTTTTG
TCTTTCAGTGTACAGAAACATTTGGTCAAAGCCAGTGAGGATGCTACCAA
CGATGAGATTCTTCATGATGATCGACCGATCATCGGCATCTTATCGCAAA
AAATCACGGAAGAGTTCACACCGTACGTAACCCACGATTCCACTTATATT
GCTGCTTCTTATGTGAAATGGATCGAAGGCGCCGGTGCACAAGTTATACC
CATTCTCTCTACTTACtctaaaaagaaagttttgaaattgGTTCGATCAA
TCAACGGTGTCCTGTTCCCTGGAGGAGCTGCACCATTAAATGATTCGAAT
TACGCCAGAGCTGCAAGATGGATTTTCAATGAAGCCATACGTATTAATGA
TTTTGAAAAGCGACCTTTCCCTCTCTGGGGTACGTGTCTTGGATTTGAAG
TATTGAATGTTTTAGGAAGTGGGTTAAGCCCTAATGAAATATTATCTGAA
TACGATTCTGAGAATTTACTTTTGGAAATTGATTTTACCAAAGAAGCGTT
TGACAGTCGTTTGTTTCACACGATTGATATGGGATTGATGAGGAAAATGA
TGTTCAAGAAATTGTCCCTTCACATGCACCAGGCTGGCATTAACCCTGAT
GTCTATGAGAAGAATTCACGGATTCGAAAAATGTTTAAAGTGTTAGCATC
CAATTTGGATAAAAAGGGGAAAGAATTTGTGTCTGTGATTGAAGGTACTA
TTCTTTTTCTACGTTATACCTTTCTTTTaactatcaaaacaaagaaaatc
aagtaCACGTTTtattataagagcatccaaaatttttgaagccttagaat
gttcttaacattttagccatcgaagccttatattcctatatatagtttgt
tcttataaaaaaacgtgtacttgtaaaaaaagttttgagttgCATTAAGA
TTTGGTTTAAGCTATCgcaggaaaaaaaattgactattgcaaaaaatatt
gttgctattgttttcgaaaacccgcaaagcttctgattggtcaaccgctg
aaattttattgtaatgtcacgtgacctaggaaagatttcctacctaacca
cggcacacttttcagccaaagcacgacatgtAGCCCCtctcgggctttat
aaatctataattttaacctctacaaaccggtgtgatagggttttttcttc
ttcattttttgggaTTCCGGGACTCAGTGAAAATTATGAcaggaaaacgg
tatttcgtaCCCCTCCAAACCCCCctttaaggaatcttttttttacttca
taGAGAGTCCACCTCTATTGATTTCAAGCTAAAAAACAACTGGAATTTCG
GATTTTTATAAACAGGATGTTTGTATATTACCGTGGAATCCGACCTCATC
ACAAACAAACCATTCCCTTCAGATATAGAAAATTGACCCCCTCAACTTta
aatgttatggttttttgtttggagaagcttataatatatttaaaatttgA
TCTCTTTTCAGGTAGAAAGTATCCTTTTTACGGCACTCAATTCCACCCCG
AAAAGAACATATATGAATGGACGAGAAACGAGAAAATCAACCATTCCCCA
GATGCTATACTAGCTGCTCAATATTTCGCTAATTTCTTTGTCAATGAAGC
TCGTAAAAGTTACATCGAAAATATGCCAGTGCGACGGTTGAAACACCTTG
AAGATCATTTGATGTTTCGATATTCTCCAGTATATTCAGGAGGTTCAAGT
CTTTTCGAGCAAGTTTACACATTTAAAAATCAAACCATCAATAACAGAAT
CAAAGCTAAAGGGAAtgctttataattttttatgcATCTTAGACTATTTA
TGATAAACATTCATAAGATTTATGGTACTGTATTTTAACTTTTATGGTAC
TGTAGTTTAACTTTTCAAcggacattttttgtttatattgggTGATCCTG
GTCAATATTTTTTCTGTAAgcatgcttttttataagaatggtgtttttct
attttcatcattgatattctcaactttttggtcatcctgaaatattctta
gggtattcttacgttAGGACTCATACCCAACCAATATACCTAACGCGAAa
ctttggcatttttgtgaaacttTCTAGCTATGATGGGAAAAAATTGGCAA
TTTGCAGGTATAATGCTCTAAAAATTCTTAGTTCCAGTTGTCAAATCCCA
TGATGATGGTATTTtcagcatattcttaattttttttgccaatttcatca
tggaaTTTCTTTATTCGTTAGATAACCTTAAATGTATTAATTTTAACGTG
TACTTGTGGAGGAGAATTCTAGACACTtgtaaatcaaaaatttatttgtt
aTCTTATTAGGACTCAAATAGTATTATTTTACTGAACTTTGACATTGTGG
TAAACATTGTTTTATAATTTGTATTGTTAATGTGATGTAACTCACTACAT
GAACACGATATAAACACCACGTGAAAAGAAAACGGAACATGGTATGGACA
TGCAATTTTGTAATTCCTTTTCTCAGACGCGATGATGCAATGCTTAATTA
TTTGCTTGCCTGTTTCTGTCAAGCAAGACTTATTTGTCATTTTGGTTACT
GTACTTGAAATGTTGTTTTGTGGTgttattttcaatcttttcttttATAT
GAGAGTAGTGAACCATCAATTAATAGCCCTTTTAATAAATCGTTTTGAGT
CACAGATCTGTAATAGGCAACTTTAAggtttctccagcaaaaaaagtgaa
gcaaaagtTTGACTTATTAAATTgtgtgccgatggataggatcaagcatt
ttaattgtttttggagcgcgagatcacaaaaagtaggcggcaaacgctat
ttcgcattcTAAAACCtgtgaaattgcttgttgtcacgtgatttctttgg
taggaaatcctaccaaaacttgcttcacttttcgataaagcccttcgggc
tttacagatctgtgttTTGAGTGCAAGgactcgttttgaaaccattaggg
agcggtcattaagtatggCACATGGTAGGNTTTCAAGCTAAAAAACAACT
GGAATTTCGGATTTTTATAAACAGGATGTTTGTATATTACCGTGGAATCC
GACCTCATCACAAACAAACCATTCCCTTCAGATATAGAAAATTGACCCCT
TCAACTTtaaatgttatggttttttgtttggagaagcttataatatattt
aaaatttgATCTCTTTTCAGGTAGAAAGTATCCTTTTTACGGCACTCAAT
TCCACCCCGAAAAGAACATATATGAATGGACGAGAAACGAGAAAATCAAC
CATTCCCCAGATGCTATACTAGCTGCTCAATATTTCGCTAATTTCTTTGT
CAATGAAGCTCGTAAAAGTTACATCGAAAATATGCCAGTGCGACGGTTGA
AACACCTTGAAGATCATTTGATGTTTCGATATTCTCCAGTATATTCAGGA
GGTTCAAGTCTTTTCGAGCAAGTTTACACATTTAAAAATCAAACCATCAA
TAACAGAATCAAAGCTAAAGGGAAtgctttataattttttatgcATCTCA
GACTATTTATGATAAACATTCATAAGATTTATGGTACTGTATTTTAACTT
TTATGGTACTGTAGTTTAACTTTTCAAcggacattttttgtttatattag
gTGATCCTGgttattttttttctgtaagcatactttttttataagaatgg
tgtttttctatttcatcattgatattctcaactttttggtcatcctgaaa
tattcttagggtattcttaggttaggactCATAACCAACCAAGATACCTC
ACGCGAAactttggcatttttgtgaaacttTCTAGCTATGATGGGAAAAA
ATTGGCAATTTGCAGGTATAATGCTCTAAAAATTCTTAGTTCCAG Coding sequence (CDS) from alignment at scaffold_228:185957..189951+ >TCONS_00053277 ID=TCONS_00053277|Name=TCONS_00053277|organism=Clytia hemisphaerica|type=CDS|length=2316bp|location=Sequence derived from alignment at scaffold_228:185957..189951+ (Clytia hemisphaerica)
acaaactacACTAAACTTACGAACAATGGATGTTTAATTCTAAAAAATCT
TTTATACAACAATCAAAAGATTTGTGCTAAAGAGAAAAACAATTTGCAAT
ATTTTGTATGTTATAAAATCATCAACATGCTGCTGTTTGTTTTCCTTTTG
TCTTTCAGTGTACAGAAACATTTGGTCAAAGCCAGTGAGGATGCTACCAA
CGATGAGATTCTTCATGATGATCGACCGATCATCGGCATCTTATCGCAAA
AAATCACGGAAGAGTTCACACCGTACGTAACCCACGATTCCACTTATATT
GCTGCTTCTTATGTGAAATGGATCGAAGGCGCCGGTGCACAAGTTATACC
CATTCTCTCTACTTACtctaaaaagaaagttttgaaattgGTTCGATCAA
TCAACGGTGTCCTGTTCCCTGGAGGAGCTGCACCATTAAATGATTCGAAT
TACGCCAGAGCTGCAAGATGGATTTTCAATGAAGCCATACGTATTAATGA
TTTTGAAAAGCGACCTTTCCCTCTCTGGGGTACGTGTCTTGGATTTGAAG
TATTGAATGTTTTAGGAAGTGGGTTAAGCCCTAATGAAATATTATCTGAA
TACGATTCTGAGAATTTACTTTTGGAAATTGATTTTACCAAAGAAGCGTT
TGACAGTCGTTTGTTTCACACGATTGATATGGGATTGATGAGGAAAATGA
TGTTCAAGAAATTGTCCCTTCACATGCACCAGGCTGGCATTAACCCTGAT
GTCTATGAGAAGAATTCACGGATTCGAAAAATGTTTAAAGTGTTAGCATC
CAATTTGGATAAAAAGGGGAAAGAATTTGTGTCTGTGATTGAAGGTAGAA
AGTATCCTTTTTACGGCACTCAATTCCACCCCGAAAAGAACATATATGAA
TGGACGAGAAACGAGAAAATCAACCATTCCCCAGATGCTATACTAGCTGC
TCAATATTTCGCTAATTTCTTTGTCAATGAAGCTCGTAAAAGTTACATCG
AAAATATGCCAGTGCGACGGTTGAAACACCTTGAAGATCATTTGATGTTT
CGATATTCTCCAGTATATTCAGGAGGTTCAAGTCTTTTCGAGCAAGTTTA
CACATTTAAAAATCAAACCATCAATAACAGAATCAAAGCTAAAGGGAAtg
ctttataaacaaactacACTAAACTTACGAACAATGGATGTTTAATTCTA
AAAAATCTTTTATACAACAATCAAAAGATTTGTGCTAAAGAGAAAAACAA
TTTGCAATATTTTGTATGTTATAAAATCATCAACATGCTGCTGTTTGTTT
TCCTTTTGTCTTTCAGTGTACAGAAACATTTGGTCAAAGCCAGTGAGGAT
GCTACCAACGATGAGATTCTTCATGATGATCGACCGATCATCGGCATCTT
ATCGCAAAAAATCACGGAAGAGTTCACACCGTACGTAACCCACGATTCCA
CTTATATTGCTGCTTCTTATGTGAAATGGATCGAAGGCGCCGGTGCACAA
GTTATACCCATTCTCTCTACTTACtctaaaaagaaagttttgaaattgGT
TCGATCAATCAACGGTGTCCTGTTCCCTGGAGGAGCTGCACCATTAAATG
ATTCGAATTACGCCAGAGCTGCAAGATGGATTTTCAATGAAGCCATACGT
ATTAATGATTTTGAAAAGCGACCTTTCCCTCTCTGGGGTACGTGTCTTGG
ATTTGAAGTATTGAATGTTTTAGGAAGTGGGTTAAGCCCTAATGAAATAT
TATCTGAATACGATTCTGAGAATTTACTTTTGGAAATTGATTTTACCAAA
GAAGCGTTTGACAGTCGTTTGTTTCACACGATTGATATGGGATTGATGAG
GAAAATGATGTTCAAGAAATTGTCCCTTCACATGCACCAGGCTGGCATTA
ACCCTGATGTCTATGAGAAGAATTCACGGATTCGAAAAATGTTTAAAGTG
TTAGCATCCAATTTGGATAAAAAGGGGAAAGAATTTGTGTCTGTGATTGA
AGGTAGAAAGTATCCTTTTTACGGCACTCAATTCCACCCCGAAAAGAACA
TATATGAATGGACGAGAAACGAGAAAATCAACCATTCCCCAGATGCTATA
CTAGCTGCTCAATATTTCGCTAATTTCTTTGTCAATGAAGCTCGTAAAAG
TTACATCGAAAATATGCCAGTGCGACGGTTGAAACACCTTGAAGATCATT
TGATGTTTCGATATTCTCCAGTATATTCAGGAGGTTCAAGTCTTTTCGAG
CAAGTTTACACATTTAAAAATCAAACCATCAATAACAGAATCAAAGCTAA
AGGGAAtgctttataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053277-exon-scaffold_228-1491911889:185957..186800 | TCONS_00053277-exon-scaffold_228-1491911889:185957..186800 | Clytia hemisphaerica | exon |
| TCONS_00053277-exon-scaffold_228-1510915933:185957..186800 | TCONS_00053277-exon-scaffold_228-1510915933:185957..186800 | Clytia hemisphaerica | exon |
| TCONS_00053277-exon-scaffold_228-1575043694:185957..186800 | TCONS_00053277-exon-scaffold_228-1575043694:185957..186800 | Clytia hemisphaerica | exon |
| TCONS_00053277-exon-scaffold_228-1491911889:187568..187923 | TCONS_00053277-exon-scaffold_228-1491911889:187568..187923 | Clytia hemisphaerica | exon |
| TCONS_00053277-exon-scaffold_228-1510915933:187568..187923 | TCONS_00053277-exon-scaffold_228-1510915933:187568..187923 | Clytia hemisphaerica | exon |
| TCONS_00053277-exon-scaffold_228-1575043694:187568..187923 | TCONS_00053277-exon-scaffold_228-1575043694:187568..187923 | Clytia hemisphaerica | exon |
| TCONS_00053277-exon-scaffold_228-1491911889:189655..189951 | TCONS_00053277-exon-scaffold_228-1491911889:189655..189951 | Clytia hemisphaerica | exon |
| TCONS_00053277-exon-scaffold_228-1510915933:189655..189951 | TCONS_00053277-exon-scaffold_228-1510915933:189655..189951 | Clytia hemisphaerica | exon |
| TCONS_00053277-exon-scaffold_228-1575043694:189655..189951 | TCONS_00053277-exon-scaffold_228-1575043694:189655..189951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:185957..189951 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016787 | hydrolase activity |
| GO:0003824 | catalytic activity |
| GO:0008242 | omega peptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006541 | glutamine metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006541 |
glutamine metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0016787 |
hydrolase activity |
| molecular_function |
GO:0008242 |
omega peptidase activity |
Blast
BLAST of TCONS_00053277 vs. Swiss-Prot (Human)
Match: GGH (Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2) HSP 1 Score: 216.853 bits (551), Expect = 3.511e-65 Identity = 118/295 (40.00%), Postives = 180/295 (61.02%), Query Frame = 1
Query: 223 RPIIGILSQKITEEFTPYVTHDSTYIAASYVKWIEGAGAQVIPILSTYSKKKVLKLVRSINGVLFPGGAAPLNDSNYARAARWIFNEAIRINDFEKRPFPLWGTCLGFEVLNVLGSGLSPNEILSEYDSENLLLEIDFTKEAFDSRLFHTIDMGLMRKMMFKKLSLHMHQAGINPDVYEKNSRIRKMFKVLASNLDKKGKEFVSVIEGRKYPFYGTQFHPEKNIYEWTRNEKINHSPDAILAAQYFANFFVNEARKSYIENMPVRRLKHLEDHLMFRYSPVYSGGSSLFEQVYTF 1107
+PIIGIL QK + + YIAASYVK++E AGA+V+P+ ++K L +SING+LFPGG+ L S+YA+ A+ +N +I+ D + FP+WGTCLGFE L++L SG +L+ D+ ++ + ++FT SR+F L+ + + L+ + H+ ++ + N +++K F VL +N D K EF+S +EG KYP YG Q+HPEK YEW + I+H+P+A+ A Y A FFVNEARK+ N + E L++++SP+Y+G S F+Q Y F
Sbjct: 33 KPIIGILMQKCRNKVMK--NYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFD-DGDYFPVWGTCLGFEELSLLISGEC---LLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGK-IEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKN---NHHFKSESEEEKALIYQFSPIYTGNISSFQQCYIF 317
The following BLAST results are available for this feature:
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