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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053279 ID=TCONS_00053279|Name=TCONS_00053279|organism=Clytia hemisphaerica|type=transcript|length=2973bpRun BLAST on NCBI protein sequence of TCONS_00053279-protein >TCONS_00053279-protein ID=TCONS_00053279-protein|Name=TCONS_00053279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=535bp MNTDDDNIFGEDESSQLITTSGKQKEAEEYEKIVDSVGFGYFQWKLLFICRun BLAST on NCBI transcript from alignment at scaffold_228:204900..217571+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053279 ID=TCONS_00053279|Name=TCONS_00053279|organism=Clytia hemisphaerica|type=transcript|length=12672bp|location=Sequence derived from alignment at scaffold_228:204900..217571+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_228:204900..217571+ >TCONS_00053279 ID=TCONS_00053279|Name=TCONS_00053279|organism=Clytia hemisphaerica|type=CDS|length=16080bp|location=Sequence derived from alignment at scaffold_228:204900..217571+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053279 vs. Swiss-Prot (Human)
Match: SV2B (Synaptic vesicle glycoprotein 2B OS=Homo sapiens GN=SV2B PE=1 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 6.962e-61 Identity = 127/340 (37.35%), Postives = 196/340 (57.65%), Query Frame = 2
Query: 125 KQKEAEEYEKIVDSVGFGYFQWKLLFICGWALASDSTEVQVVSFVIPAA-CDLGMTSSEKGWLNGIIFVGMMIGGYVFGGAADIKGRRYVLLWSMTINGLFGLASSFAPTFGWFLLLRMLSGIGVGAAMPVLFSYFVEFMRKETRGRMITLFASFWMVGNIITSAIAWLLIPKVHIGGQLGSIY-YGSWRIFVAVGSFPSLSSAVLFFFLPESPKFMMQNNQVERAKKAFIKIFKQNNGKHSSVPACIL---GIETPDGNEYNKKREISISDPDMCTFCQCLCESLKTLQKVLHSTYDLFC--KPYTSISIILLFIWITLSFGYYGLWMWFPEIFKRIQE 1123
+++ A +YE I+D G G FQW L F+ G AL +D EV VVSF +P+A D+ ++SS+KG L I+++GMM G ++ GG AD GR+ VL S+ +N F SSF +G FL R++SGIG+G A+P++F+YF EF+ +E RG ++ FWM G + SA+AW +IP G +G+ Y + SWR+FV V + P S V F+PESP+F+++ + + A +K N + P + I+TP + ++ EI S T+ Q KT+ K + L+C PY ++IL +W ++F YYGL +WFP++ + Q+
Sbjct: 88 EEQLAHQYETIMDECGHGRFQWILFFVLGLALMADGVEVFVVSFALPSAEKDMCLSSSKKGMLGMIVYLGMMAGAFILGGLADKLGRKRVLSMSLAVNASFASLSSFVQGYGAFLFCRLISGIGIGGALPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGLYASAMAWSIIPHYGWGFSMGTNYHFHSWRVFVIVCALPCTVSMVALKFMPESPRFLLEMGKHDEA-WMILKQVHDTNMRAKGTPEKVFTVSNIKTP--KQMDEFIEIQSS---TGTWYQRWLVRFKTIFKQVWDN-ALYCVMGPYRMNTLILAVVWFAMAFSYYGLTVWFPDMIRYFQD 420 HSP 2 Score: 109.383 bits (272), Expect = 2.189e-24 Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = 2
Query: 1196 CVEKVEAETE--IYFQSFLIALSNLPGNIICYLLIDRIGRRNLLAGTMVLSAVCVFFFWFVDTKIKMLIMSCFFSALSVCGWNALDPLALENYPTHLRSSAFGLQASVGRVAAILGNVVFGELV 1561
C +E + + IY SFL +LS LPGNII LL+DRIGR ++ G+M++SAVC FF +F +++ M+ C F S+ WNALD + +E YPT+ R++AFG+ + + AILGN +F V
Sbjct: 526 CHMDLEQDNDFLIYLVSFLGSLSVLPGNIISALLMDRIGRLKMIGGSMLISAVCCFFLFFGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKFGAILGNTIFASFV 649 The following BLAST results are available for this feature:
BLAST of TCONS_00053279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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