|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053280 ID=TCONS_00053280|Name=TCONS_00053280|organism=Clytia hemisphaerica|type=transcript|length=1781bpRun BLAST on NCBI transcript from alignment at scaffold_228:204933..230710+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053280 ID=TCONS_00053280|Name=TCONS_00053280|organism=Clytia hemisphaerica|type=transcript|length=25778bp|location=Sequence derived from alignment at scaffold_228:204933..230710+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053280 vs. Swiss-Prot (Human)
Match: SV2B (Synaptic vesicle glycoprotein 2B OS=Homo sapiens GN=SV2B PE=1 SV=1) HSP 1 Score: 305.834 bits (782), Expect = 7.536e-94 Identity = 191/596 (32.05%), Postives = 300/596 (50.34%), Query Frame = 2
Query: 92 KQKEAEEYEKIVDSVGFGYFQWKLLFICGWALASDSTEVQVVSFVIPAA-CDLGMTSSEKGWLNGIIFVGMMIGGYAFGGAADIKGRRLVLICSLTINGIFGLLSSFASTFTWFIFFRWASGIGVGAALPVLFSYFAEFISREIRGPMIEMLASFLLLGNIMTAGGAWSIIPYKTFWFA---GSSIRSWRIFVALFSLPALSSAVLFVFMPESPKFLVRMGRIDEAKKVFQRIWKTNHRNKKDLSPLI--------QNMSFYDEIKGNSIN------ISMHKVFSSTME-----LFGKYRRKSTLSLLIIWFTMSFAYYGLWMWLPEI--YNRMESYQVSV------------------CQTPIHMKISGLKFTRR--SNDTFNDT-ISPCQIEDFSPTNN-------------------------------------------------VVFLKTFLIAISNIPGALLTIFAIDKVGRRNLLASSMSCSGLSVLFFLLVRNDIEMMSMSCVFSGLSVVSWNVLNAIALENYPTHLRSTAFGLQTSVGRIASILGNIVFGLLVDVQCTVPLILVTISFIIGGIASFLVPKTDYNLL 1594
+++ A +YE I+D G G FQW L F+ G AL +D EV VVSF +P+A D+ ++SS+KG L I+++GMM G + GG AD GR+ VL SL +N F LSSF + F+F R SGIG+G ALP++F+YF+EF+SRE RG + L F + G + + AWSIIP+ + F+ SWR+FV + +LP S V FMPESP+FL+ MG+ DEA + +++ TN R K + + M + EI+ ++ + +F + + G YR +TL L ++WF M+F+YYGL +W P++ Y + E Y+ + Q H K+ KFTR + F DT C ED + T+ +++L +FL ++S +PG +++ +D++GR ++ SM S + F ++ M+ C+F G S+ +WN L+ I +E YPT+ R+TAFG+ + + +ILGN +F V + VP++L S + GG+ + +P+T +L
Sbjct: 88 EEQLAHQYETIMDECGHGRFQWILFFVLGLALMADGVEVFVVSFALPSAEKDMCLSSSKKGMLGMIVYLGMMAGAFILGGLADKLGRKRVLSMSLAVNASFASLSSFVQGYGAFLFCRLISGIGIGGALPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGLYASAMAWSIIPHYGWGFSMGTNYHFHSWRVFVIVCALPCTVSMVALKFMPESPRFLLEMGKHDEAWMILKQVHDTNMRAKGTPEKVFTVSNIKTPKQMDEFIEIQSSTGTWYQRWLVRFKTIFKQVWDNALYCVMGPYRM-NTLILAVVWFAMAFSYYGLTVWFPDMIRYFQDEEYKSKMKVFFGEHVYGATINFTMENQIHQHGKLVNDKFTRMYFKHVLFEDTFFDECYFEDVTSTDTYFKNCTIESTIFYNTDLYEHKFINCRFINSTFLEQKEGCHMDLEQDNDFLIYLVSFLGSLSVLPGNIISALLMDRIGRLKMIGGSMLISAVCCFFLFFGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKFGAILGNTIFASFVGITKVVPILLAAASLVGGGLIALRLPETREQVL 682 The following BLAST results are available for this feature:
BLAST of TCONS_00053280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.