Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053458 ID=TCONS_00053458|Name=TCONS_00053458|organism=Clytia hemisphaerica|type=transcript|length=2295bpRun BLAST on NCBI transcript from alignment at scaffold_231:234867..242876- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053458 ID=TCONS_00053458|Name=TCONS_00053458|organism=Clytia hemisphaerica|type=transcript|length=8010bp|location=Sequence derived from alignment at scaffold_231:234867..242876- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00053458 vs. Swiss-Prot (Human)
Match: FBLN2 (Fibulin-2 OS=Homo sapiens GN=FBLN2 PE=1 SV=2) HSP 1 Score: 188.348 bits (477), Expect = 2.474e-49 Identity = 148/525 (28.19%), Postives = 234/525 (44.57%), Query Frame = 3 Query: 876 PQRKTCSDIVCDKASTVSCGETNDGPVCHCKDGYFAGLDKITCHDMDECLANKTICSVGK-CQNTMGSYEC----VCDVGFEMQD------NKCVKSTD--------------------KECRKGF-ELKDGECVDINECVTGAENCHSDLMCLNVNGTF---------------------------------RCIEPQNCHSKY-------QAIYSTITNKRYCEDIDECAIHGNQICRNPFTECINIVGGYQCKQTRCQDGLKLL--NGYCTDIDECIEQPGICGEKGRCINLSGSYSCICNEGYKPDPATKKCIDVNECRLKLH-QCSYQCINTPGSYYCKCP-TGYEARST-KACNDIDECATGGHDCSGSERCFNTYGSYRCIDESCPAPYYIRTGRNFCKKAKCEKEDLYCQHLKIRQIKWQ-TFRFRQTLPVNFFRFSYSVSGYQSHIHYNFALAEGNDENLLAVEYLDERKIVIYNQNEIKGPKDIHLKLFVDVLEYQQLIDRFVYKLNLFFSAYDL 2216 PQ TC D + C +C C GY D ++C D++EC+ + CS G+ C NT+GS+ C C+ G+ ++D ++C T + C GF + +G CVDINEC + +E C C+N G++ RC E Q CH+ +A + R C D++EC ++C++ C N +G Y+C C G L C D++EC Q C ++ C N+ GSY C C +GY+ C D++EC C+++C+N PGSY C CP GY + ++C D+DECA G H+CS +E C N GS+RC+ CP P Y++ + C++ C + L CQ+ R +Q F+ +P + FR + + I N + +GN+E L+ V+Y Q + P+D L + + L Q + F+ K+++FF+ + L Sbjct: 678 PQPNTCKD---NGPCKQVCSTVGGSAICSCFPGYAIMADGVSCEDINECVTDLHTCSRGEHCVNTLGSFHCYKALTCEPGYALKDGECEDVDECAMGTHTCQPGFLCQNTKGSFYCQARQRCMDGFLQDPEGNCVDINECTSLSEPCRPGFSCINTVGSYTCQRNPLICARGYHASDDGTKCVDVNECETGVHRCGEGQVCHNLPGSYRCDCKAGFQRDAFGRGCIDVNECWASPGRLCQH---TCENTLGSYRCS---CASGFLLAADGKRCEDVNECEAQ--RCSQE--CANIYGSYQCYCRQGYQLAEDGHTCTDIDECAQGAGILCTFRCLNVPGSYQCACPEQGYTMTANGRSCKDVDECALGTHNCSEAETCHNIQGSFRCLRFECP-PNYVQVSKTKCERTTCH-DFLECQNSPARITHYQLNFQTGLLVPAHIFRIGPAPAFTGDTIALN--IIKGNEEGYFGTRRLNAYTGVVYLQRAVLEPRDFALDVEMK-LWRQGSVTTFLAKMHIFFTTFAL 1184 HSP 2 Score: 134.806 bits (338), Expect = 3.214e-32 Identity = 120/442 (27.15%), Postives = 182/442 (41.18%), Query Frame = 3 Query: 573 ATQKLLCKTIYKQCCISSVKSNFCTTGIELGQSNAICSGGKNDI-GGGAAMECCDCCKVGEKAASKREDCDAVKFKNDLCTHAYRKCCKDKEQEM------PIQTTQTPQRKTCSDIVCDKASTVSCGETNDGPVCHCKDGYFAGLDKITCHDMDECLANKTICSVGKCQNTMGSYECVCDVGFEMQDNKCVKSTDKECRKGFELKDGECVDINECVTGAENCHSDLMCLNVNGTFRCIEPQNCHSKYQAI-----------YSTITNKRYCEDIDECAIHGNQICRNPFTECINIVGGYQC-KQTRCQDGLKLLNGYCTDIDECIEQPGICGEKGRCINLSGSYSC----ICNEGYKPDPATKKCIDVNECRLKLHQC--SYQCINTPGSYYCK-----CPTGYEARSTKA-CNDIDECATGGHDCSGSERCFNTYGSYRC 1805 T+ +C+T + CC+S ++ C G+ + C ND G +CCDCC +G + ++ + C++ C H CC+ +E + P + P+R + +++ +A +S G + P + + D DECL C NT+GSY C C GF +QD+ + CR E + S+ + L + C + C + Y+ + + CEDI+EC + R C+N +G + C K C+ G L +G C D+DEC C C N GS+ C C +G+ DP C+D+NEC C + CINT GSY C+ C GY A C D++EC TG H C + C N GSYRC Sbjct: 466 GTEDNVCRTAQRHCCVSYLQEKSCMAGVLGAKEGETCGAEDNDSCGISLYKQCCDCCGLGLRVRAEGQSCESNPNLGYPCNHVMLSCCEGEEPLIVPEVRRPPEPAAAPRRVSEAEMAGREA--LSLGTEAELP------------NSLPGDDQDECLLLPGELCQHLCINTVGSYHCACFPGFSLQDD------GRTCRPEGHPPQPEAPQEPALKSEFSQVASNTIPLPLPQPNTCKDNGPCKQVCSTVGGSAICSCFPGYAIMADGVSCEDINECVTDLHTCSRG--EHCVNTLGSFHCYKALTCEPGYALKDGECEDVDECAMGTHTCQPGFLCQNTKGSFYCQARQRCMDGFLQDP-EGNCVDINECTSLSEPCRPGFSCINTVGSYTCQRNPLICARGYHASDDGTKCVDVNECETGVHRCGEGQVCHNLPGSYRC 884 The following BLAST results are available for this feature:
BLAST of TCONS_00053458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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