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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053460 ID=TCONS_00053460|Name=TCONS_00053460|organism=Clytia hemisphaerica|type=transcript|length=2323bpRun BLAST on NCBI transcript from alignment at scaffold_231:235870..242876- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053460 ID=TCONS_00053460|Name=TCONS_00053460|organism=Clytia hemisphaerica|type=transcript|length=7007bp|location=Sequence derived from alignment at scaffold_231:235870..242876- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053460 vs. Swiss-Prot (Human)
Match: FBLN1 (Fibulin-1 OS=Homo sapiens GN=FBLN1 PE=1 SV=4) HSP 1 Score: 183.341 bits (464), Expect = 1.092e-48 Identity = 183/687 (26.64%), Postives = 284/687 (41.34%), Query Frame = 3
Query: 522 ADKFEEIQNKLNLQLNGATQKLLCKTIYKQCCISSVKSNFCTTGIELGQSNAICS---GGKNDIGGGAAMECCDCCKVGEKAASKREDCDAVKFKNDLCTHAYRKCCKDKEQEMPIQTTQTPQRKTCSDIVCDKASTV-------------SCGETNDGPVCHCKDGYFAGLDKITCHDMDECLANKTICSVGK-----------------------------------------------CQNTMGSYEC----VCDVGFEMQD--------NKCV---------------------KSTDKECRKGFELKD--GECVDINECVTGAENCHSDLMCLNVNGTFRCIEPQNCHSKYQAIYSTITNKRYCEDIDECAIHGNQICRNPFTECINIVGGYQCKQTRCQDGLKL-LNGY-CTDIDECIEQPGICGEKGRCINLSGSYSCICNEGYK-PDPATKKCIDVNECRLKL--HQCSYQCINTPGSYYCKCPT-GYE-ARSTKACNDIDECATGGHDCSGSERCFNTYGSYRCIDESCPAPYYI--------RTGRNVCRKVNCYGNPKCRTLPTQSIKWSHYKF--YRDFQR-HGFVFTYSLSGFGPS--WNLNFEFASGNTDGAFEILQTDTRGRV--KVRNSKDIKGPKDYELVFRADASDAVHG-HHQRFVYKIFISVSQYPF 2219
AD ++ + L AT+ C+ + +QCC S ++ C TGI L C+ G + CC CC +G A ++ + C+ C ++ CC ++ + + ++ ++ C +T D VC C GY D ++C D++EC+ C +G+ CQNT+GS+ C C GF +QD N+C+ + C +G+ L + CVD++EC AE C C+N G+FRC C + Y + I+ R C D++EC + ++C + +C N +G Y C C G +L ++G C DI+EC P C ++ C N+ GSY C C GY+ D C D++EC L H CSY+CIN PGS+ C CP+ GY A + + C DIDEC TG H+CS +E CFN G +RC+ CP Y +T C K + C P +I + +R+F R +F +++ P+ N+ F+ GN +F+I++ G VR + I GP + V + + + V G R V + I VS+Y F
Sbjct: 38 ADGHRMATHQKDCSLPYATESKECRMVQEQCCHSQLEELHCATGISLANEQDRCATPHGDNASLEATFVKRCCHCCLLGRAAQAQGQSCEYSLMVGYQCGQVFQACCVKSQETGDLDVGGLQETDKIIEVEEEQEDPYLNDRCRGGGPCKQQCRDTGDEVVCSCFVGYQLLSDGVSCEDVNECITGSHSCRLGESCINTVGSFRCQRDSSCGTGYELTEDNSCKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGF-IQDALGNCIDINECLSISAPCPIGHTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECAPPAEPCGKGHRCVNSPGSFRC----ECKTGY--YFDGIS--RMCVDVNECQRYPGRLCGH---KCENTLGSYLCS---CSVGFRLSVDGRSCEDINECSSSP--CSQE--CANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSSGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGGFRCLAFECPENYRRSAATLQQEKTDTVRCIKSCRPNDVTCVFDPVHTISHTVISLPTFREFTRPEEIIFLRAITPPHPASQANIIFDITEGNLRDSFDIIKRYMDGMTVGVVRQVRPIVGP--FHAVLKLEMNYVVGGVVSHRNVVNVHIFVSEYWF 703 HSP 2 Score: 85.8853 bits (211), Expect = 3.404e-17 Identity = 119/476 (25.00%), Postives = 195/476 (40.97%), Query Frame = 3
Query: 735 CCKVGEKAASKREDCD-AVKFKNDLCTHAYRKCCKDKEQEMPIQT--TQTPQRKTCSDIVCDKASTVSCGETNDGPVCHCKDGYFAGLDKITCHDMDECLANKTICSVGK-CQ-NTMGSYECV---------------CDVGFEMQDNKCVKSTDKE--------CRKGFELKDGECVDINE-----CVTGAENCHSDLMCLNVN-------------------GTFRCIEPQNCHSKYQAIYSTITNKRYCEDIDECAIHGNQICRNPFTECINIVGGYQCK-QTRCQDG-LKLLNGYCTDIDECIEQPGICGEKGRCINLSGSYSCI-----CNEGYKPDPATKKCIDVNECRLKLHQC--SYQCINTPGSYYCKCPTGYEARS-TKACNDIDECAT-GGHDCSGSERCFNTYGSYRCIDESCPAPYYIRTGRNVCRKVNCYGNPKCRTLPTQSIKWSHYKFYRDFQRHGFVFT 1973
CC G + A+ ++DC ++ C +CC + +E+ T + ++ C+ D AS + T CHC CL + + G+ C+ + M Y+C DVG + +K ++ +++ CR G K +C D + C G + + C +VN G+FRC +C + Y+ +T C+DIDEC G C F C N +G ++C+ + +C+ G ++ G C DI+EC+ C CIN GSY+C C GY + +C+DV+EC C ++C+N+PGS+ C+C TGY ++ C D++EC G C +C NT GSY C SC + + C +N +C + P + Y Y+ + R G+ +
Sbjct: 36 CCADGHRMATHQKDCSLPYATESKECRMVQEQCCHSQLEELHCATGISLANEQDRCATPHGDNASLEA---TFVKRCCHC------------------CLLGRAAQAQGQSCEYSLMVGYQCGQVFQACCVKSQETGDLDVGGLQETDKIIEVEEEQEDPYLNDRCRGGGPCKQ-QCRDTGDEVVCSCFVGYQLLSDGVSCEDVNECITGSHSCRLGESCINTVGSFRCQRDSSCGTGYE-----LTEDNSCKDIDECE-SGIHNCLPDFI-CQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPIGHTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECAPPAEPCGKGHRCVNSPGSFRCECKTGYYFDGISRMCVDVNECQRYPGRLC--GHKCENTLGSYLC---SCSVGFRLSVDGRSCEDIN-----ECSSSPCSQECANVYGSYQCYCRRGYQLS 472 The following BLAST results are available for this feature:
BLAST of TCONS_00053460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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