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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053462 ID=TCONS_00053462|Name=TCONS_00053462|organism=Clytia hemisphaerica|type=transcript|length=1527bpRun BLAST on NCBI protein sequence of TCONS_00053462-protein >TCONS_00053462-protein ID=TCONS_00053462-protein|Name=TCONS_00053462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp MKYILQIFAVGLVNLLLHVHCDSETSASGEKQDGEMQIRDDCMRNEKSPCRun BLAST on NCBI transcript from alignment at scaffold_231:243355..247620- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053462 ID=TCONS_00053462|Name=TCONS_00053462|organism=Clytia hemisphaerica|type=transcript|length=4266bp|location=Sequence derived from alignment at scaffold_231:243355..247620- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_231:243355..247620- >TCONS_00053462 ID=TCONS_00053462|Name=TCONS_00053462|organism=Clytia hemisphaerica|type=CDS|length=9024bp|location=Sequence derived from alignment at scaffold_231:243355..247620- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053462 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 5.655e-33 Identity = 71/167 (42.51%), Postives = 93/167 (55.69%), Query Frame = 3
Query: 366 RICQDVNECEYVR--CGKNRECINLLGGYKCKQVNCSKGFELKND--RCHDIDECATKDVCGKGRCRNYWGSFYCYCNHGYKPCQKTKKCIDVNECESNFRRCAYECMNTEGSYKC--QCPKGY-KSQGPYCYDVNECSSGEHTCTGMEDCVNTKGSFQCVTYKCPK 845
R CQD++EC R C ++C N +G Y+C V C GF +D C DI+EC C + RC N GSF+C C GY+ K +KC+DVNEC N R C NT G YKC CP G K++ C D++EC G H C + C NT+GS++CV CP+
Sbjct: 5143 RTCQDIDECALGRHTCHAGQDCDNTIGSYRC-VVRCGSGFRRTSDGLSCQDINECQESSPCHQ-RCFNAIGSFHCGCEPGYQ--LKGRKCMDVNECRQNVCRPDQHCKNTRGGYKCIDLCPNGMTKAENGTCIDIDECKDGTHQCRYNQICENTRGSYRCV---CPR 5302 HSP 2 Score: 106.301 bits (264), Expect = 7.443e-24 Identity = 63/160 (39.38%), Postives = 80/160 (50.00%), Query Frame = 3
Query: 252 EKSPCDYPQFCLTKKNGTHRCIANCYYPRYKASYKNKRRICQDVNECEYVRCGKNRECINLLGGYKCKQVNCSKGF-ELKNDRCHDIDECATKDVCGKGR----CRNYWGSFYCYCNHGYKPCQKTKKCIDVNECESNFRRCAYECMNTEGSYKCQCPKG 716
E SPC Q C H C + Y+ K R C DVNEC C ++ C N GGYKC + C G + +N C DIDEC KD + R C N GS+ C C GY+ + C+D+NECE + CA++C NT GS+KC CP G
Sbjct: 5198 ESSPCH--QRCFNAIGSFH---CGC-----EPGYQLKGRKCMDVNECRQNVCRPDQHCKNTRGGYKCIDL-CPNGMTKAENGTCIDIDEC--KDGTHQCRYNQICENTRGSYRCVCPRGYRSQGVGRPCMDINECEQVPKPCAHQCSNTPGSFKCICPPG 5344 HSP 3 Score: 105.145 bits (261), Expect = 1.916e-23 Identity = 64/189 (33.86%), Postives = 90/189 (47.62%), Query Frame = 3
Query: 372 CQDVNECEYVR-CGKNRECINLLGGYKCKQVNCSKGFELKND--RCHDIDECAT-KDVCGKGR-CRNYWGSFYCY--CNHGYKPCQKTKKCIDVNECESNFRRCAYECMNTEGSYKCQCPKGYKSQGPYCYDVNECSSGEHTCTGMEDCVNTKGSFQCVTYKCPKYMNRVGSNVCRK-QYCHKDDKQCQ 914
C D +EC C + C N +G Y C +C KG + D C DIDECA + C G+ C N GS+ C C G++ C D+NEC+ + C C N GS+ C C GY+ +G C DVNEC ++ C + C NT+G ++C+ CP M + + C C QC+
Sbjct: 5105 CADEDECAAGNPC--SHSCHNAMGTYYC---SCPKGLTIAADGRTCQDIDECALGRHTCHAGQDCDNTIGSYRCVVRCGSGFRRTSDGLSCQDINECQES-SPCHQRCFNAIGSFHCGCEPGYQLKGRKCMDVNECR--QNVCRPDQHCKNTRGGYKCIDL-CPNGMTKAENGTCIDIDECKDGTHQCR 5284 HSP 4 Score: 96.6709 bits (239), Expect = 9.196e-21 Identity = 78/275 (28.36%), Postives = 107/275 (38.91%), Query Frame = 3
Query: 234 DDCMRNEKSPCDYPQFCLTKKNGTHRCIANCYYPRYKASYKNKRRICQDVNECEYVRCGKNRECINLLGGYKCKQVNCSKGFELKNDRCHDIDECATKDVCGKGRCRNYWGSFYCY-------CNHGYKPCQKTKK---------------------------------------CIDVNECESNFRRCAYECMNTEGSYKCQCPKGYK--SQGPYCYDVNECSSGEHTCTGMEDCVNTKGSFQCVTYKC-PKYMNRVGSNVCRKQYCHKDDKQC 911
D+C ++ C Y Q C + G++RC+ PR S + R C D+NECE V +C N G +KC C G L D K G R NY + Y + Y+P Q ++ C+D++ECE N C +EC NT GSY+C CP GY+ G C D++EC C C N +GS+QC+ C P Y S C K C +D +C
Sbjct: 5274 DEC-KDGTHQCRYNQICENTR-GSYRCVC----PRGYRS-QGVGRPCMDINECEQVPKPCAHQCSNTPGSFKCI---CPPGQHLLGD---------GKSCAGLERLPNYGTQYSSYNLARFSPVRNNYQPQQHYRQYSHLYSSYSEYRNSRTSLSRTRRTIRKTCPEGSEASHDTCVDIDECE-NTDACQHECKNTFGSYQCICPPGYQLTHNGKTCQDIDECLEQNVHCGPNRMCFNMRGSYQCIDTPCPPNYQRDPVSGFCLKN-CPPNDLEC 5527 The following BLAST results are available for this feature:
BLAST of TCONS_00053462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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