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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053464 ID=TCONS_00053464|Name=TCONS_00053464|organism=Clytia hemisphaerica|type=transcript|length=2421bpRun BLAST on NCBI protein sequence of TCONS_00053464-protein >TCONS_00053464-protein ID=TCONS_00053464-protein|Name=TCONS_00053464-protein|organism=Clytia hemisphaerica|type=polypeptide|length=594bp MKGLFCLVLFSLAITKCFATTAEDTKCCEDGVNYGRKLFAGDKQGGQCADRun BLAST on NCBI transcript from alignment at scaffold_231:248066..256231- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053464 ID=TCONS_00053464|Name=TCONS_00053464|organism=Clytia hemisphaerica|type=transcript|length=8166bp|location=Sequence derived from alignment at scaffold_231:248066..256231- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_231:248066..256231- >TCONS_00053464 ID=TCONS_00053464|Name=TCONS_00053464|organism=Clytia hemisphaerica|type=CDS|length=21420bp|location=Sequence derived from alignment at scaffold_231:248066..256231- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053464 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 7.583e-30 Identity = 95/263 (36.12%), Postives = 125/263 (47.53%), Query Frame = 1
Query: 1087 FCKAENACYTSKNRCRPEHFCISVHGVPRCYMNCPTTNRRYTKTKLSNGQQVCEDVDECKENLHRCNAETQECINTVGGYRCKNVRCVQGFRMING--RCKDVDECLDEPSICGKGQCQNYHGSYYCECRDGYSSDPTTKVCTDVNECAISSRKYC--DYKCMNTEGSFECS--CPKGY-RIMGEDCIDIDECKKNPGICPSGSFCFNTHGSYQCIEQKCPDMEYYAQEARKGDPMACKKVCDEAPLEKKMQCELGRTPQSIK 1854
FC E+ C + N C H C + G C +CP ++ + C+D+DEC H C+A Q+C NT+G YRC VRC GFR + C+D++EC E S C + +C N GS++C C GY + C DVNEC + C D C NT G ++C CP G + CIDIDECK C C NT GSY+C+ CP Y +Q G P C++ P QC TP S K
Sbjct: 5104 FCADEDEC-AAGNPC--SHSCHNAMGTYYC--SCPK------GLTIAADGRTCQDIDECALGRHTCHA-GQDCDNTIGSYRCV-VRCGSGFRRTSDGLSCQDINEC-QESSPCHQ-RCFNAIGSFHCGCEPGYQL--KGRKCMDVNEC---RQNVCRPDQHCKNTRGGYKCIDLCPNGMTKAENGTCIDIDECKDGTHQCRYNQICENTRGSYRCV---CP-RGYRSQGV--GRPCMDINECEQVPKPCAHQCS--NTPGSFK 5338 HSP 2 Score: 117.472 bits (293), Expect = 1.255e-26 Identity = 97/334 (29.04%), Postives = 132/334 (39.52%), Query Frame = 1
Query: 973 GRKCSDV-KCDPKTSLG--CFYASRFAKCKCKEGHKNHGRFFCKAENACYTSKNRCRPEHFCISVHGVPRCYMNCPTTNRRYTKTKLSNGQQVCEDVDECKENLHRCNAETQECINTVGGYRCKNVRCVQGFRM--INGRCKDVD-----------ECLDEPS----ICGKGQ--------------CQNYHGSY------------------------------YCECRDGYSSDPTTK----------------VCTDVNECAISSRKYCDYKCMNTEGSFECSCPKGYRIM--GEDCIDIDECKKNPGICPSGSFCFNTHGSYQCIEQKCP 1728
G C D+ +C + CF A C C+ G++ GR C N C +N CRP+ C + G +C CP TK NG C D+DECK+ H+C Q C NT G YRC C +G+R + C D++ +C + P IC GQ NY Y Y E R+ +S T+ C D++EC + C ++C NT GS++C CP GY++ G+ C DIDEC + C CFN GSYQCI+ CP
Sbjct: 5187 GLSCQDINECQESSPCHQRCFNAIGSFHCGCEPGYQLKGRK-CMDVNEC--RQNVCRPDQHCKNTRGGYKCIDLCPNG-----MTKAENG--TCIDIDECKDGTHQCRY-NQICENTRGSYRCV---CPRGYRSQGVGRPCMDINECEQVPKPCAHQCSNTPGSFKCICPPGQHLLGDGKSCAGLERLPNYGTQYSSYNLARFSPVRNNYQPQQHYRQYSHLYSSYSEYRNSRTSLSRTRRTIRKTCPEGSEASHDTCVDIDEC--ENTDACQHECKNTFGSYQCICPPGYQLTHNGKTCQDIDECLEQNVHCGPNRMCFNMRGSYQCIDTPCP 5504 HSP 3 Score: 113.235 bits (282), Expect = 2.845e-25 Identity = 73/219 (33.33%), Postives = 100/219 (45.66%), Query Frame = 1
Query: 1243 CEDVDECKENLHRCNAETQECINTVGGYRCKNVRCVQGFRMI-NGR-CKDVDECLDEPSICGKGQ-CQNYHGSYYC--ECRDGYSSDPTTKVCTDVNECAISSRKYCDYKCMNTEGSFECSCPKGYRIMGEDCIDIDECKKNPGICPSGSFCFNTHGSYQCIEQKCPDMEYYAQEARKGDPMACK---------KVCDEAPLEKKMQCELGRTPQSIKR 1857
C D DEC N + C N +G Y C C +G + +GR C+D+DEC C GQ C N GSY C C G+ C D+NEC SS C +C N GSF C C GY++ G C+D++EC++N +C C NT G Y+CI+ CP+ A+ D CK ++C+ + C G Q + R
Sbjct: 5105 CADEDECAAG----NPCSHSCHNAMGTYYCS---CPKGLTIAADGRTCQDIDECALGRHTCHAGQDCDNTIGSYRCVVRCGSGFRRTSDGLSCQDINECQESSP--CHQRCFNAIGSFHCGCEPGYQLKGRKCMDVNECRQN--VCRPDQHCKNTRGGYKCIDL-CPNGMTKAENGTCIDIDECKDGTHQCRYNQICENTRGSYRCVCPRGYRSQGVGR 5311 HSP 4 Score: 106.301 bits (264), Expect = 4.237e-23 Identity = 77/240 (32.08%), Postives = 108/240 (45.00%), Query Frame = 1
Query: 1012 SLGCFYASRFAKCKCKEGHK--NHGRFFCKAENACYTSKNRCRPEHFCISVHGVPRCYMNCPTTNRRYTKTKLS-----------------------------NGQQV----CEDVDECKENLHRCNAETQECINTVGGYRCKNVRCVQGF-RMINGRCKDVDECLDEPSICGKGQ-CQNYHGSYYCECRDGYSSDPTTKVCTDVNECAISSRKYCDYKCMNTEGSFECSCPKGYRIMGE 1620
++G +Y C C +G GR C+ + C ++ C C + G RC + C + RR T LS G Q+ C DV+EC++N+ R + Q C NT GGY+C ++ C G + NG C D+DEC D C Q C+N GSY C C GY S + C D+NEC K C ++C NT GSF+C CP G ++G+
Sbjct: 5124 AMGTYY------CSCPKGLTIAADGRT-CQDIDECALGRHTCHAGQDCDNTIGSYRCVVRCGSGFRR-TSDGLSCQDINECQESSPCHQRCFNAIGSFHCGCEPGYQLKGRKCMDVNECRQNVCRPD---QHCKNTRGGYKCIDL-CPNGMTKAENGTCIDIDECKDGTHQCRYNQICENTRGSYRCVCPRGYRSQGVGRPCMDINECE-QVPKPCAHQCSNTPGSFKCICPPGQHLLGD 5350 The following BLAST results are available for this feature:
BLAST of TCONS_00053464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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