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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053469 ID=TCONS_00053469|Name=TCONS_00053469|organism=Clytia hemisphaerica|type=transcript|length=1111bp
ATCCCCTAATGCTTGTTAAGCTTCTGTGCTTTTTTCGAAATGATAATTCA
AGGTTACAAAAGTTCACTAATTGAAATATATCATACATTATCATAAATTC
AGTTTCGAAAGCTGTTAATTTTCAACTGCTGCTGTACATCACGTTAATTT
ACCGTTCAAGATCTTTTTTAAAGTACGCAAGAGAAGGTTATTCTTGTTAT
TATACGAGTGTTGAATTCTCGGTAGGCCATAATCAAAAGCATCGAAATCT
TCTTTGTAATATTTGTAAATCCCTAAAATATCCTTTTCATCTAAAGTAGA
GAAGAGATGGAACATCAAATCATTCGAACTGACTTTATAGCCATCGGTCC
AAGTTTTGGGGAACTTATGAACGGAATCTACACGTCGCACCACTTCCTTT
GCATCTCTCAAAAGTGATTCCATCTTCCCGATAAAGTTATATCGGATTTG
ACATGGGTGACATAGTTTGGTTGCAGGGTACCAATGCGGGTCATATGGTT
CGACCTGCACAATCCAGCGAACGAATTCTTGAAAAGTTGCACCGCGTCCG
CGATTATATTCCTCTTTACTCAAATCTTTTCGAAACATTTTCAATATTCT
TGACCCGtacgttttttcaaaataagtatTGTTATCCGCGAACTTATTCC
GGTATGCAGATGCTAATCTTTCAAAAGGGTGTCTTACGAACATAAACTTG
AAAGAGTCTTTTATAACTTTTGGCATCGCGTGTCCCTTGACATGATACAA
GGGTCGAAGACCTCGTTGCGTATGAACCTTCGATTTGACACCCATTTCAC
TAATGTTTGACTTTATACCATCGAACAAAAGTAGCATTCTCTTCCAGTTC
GTACTAGCGACTTTGGGTACGGCGCAATAGAGCACCGGTAGAACGCGACT
AACGAATATATGTCCCTTTTGCTCTCGCTCAAGAAACCTCTGCTGTATGA
ATGTTCTGAGACTCGTACCGCCATCTTTTTTCCGTTTAGCTTGACAAAAA
TGTCGGAGGTAATTCAATCGTTGCTGCTGCACTGGATTCGGTATGAACTG
GAAGAAGATAAAGAAGAAgGGTCAAATTCGCTAAACATGGCACCATAAAA
GATGGAAGACA Run BLAST on NCBI transcript from alignment at scaffold_231:270680..274644- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053469 ID=TCONS_00053469|Name=TCONS_00053469|organism=Clytia hemisphaerica|type=transcript|length=3965bp|location=Sequence derived from alignment at scaffold_231:270680..274644- (Clytia hemisphaerica)
ATCCCCTAATGCTTGTTAAGCTTCTGTGCTTTTTTCGAAATGATAATTCA
AGGTTACAAAAGTTCACTAATTGAAATATATCATACATTATCATAAATTC
AGTTTCGAAAGCTGTTAATTTTCAACTGCTGCTGTACATCACGTTAATTT
ACCGTTCAAGATCTTTTTTAAAGTACGCAAGAGAAGGTTATTCTTGTTAT
TATACGAGTGTTGAATTCTCGGTAGGCCATAATCAAAAGCATCGAAATCT
TCTTTGTAATATTTGTAAATCCCTAAAATATCCTTTTCATCTAAAGTAGA
GAAGAGATGGAACATCAAATCATTCGAACTGACTTTATAGCCATCGGTCC
AAGTTTTGGGGAACTTATGAACGGAATCTACACGTCGCACCACTTCCTTT
GCATCTCTCAAAAGTGATTCCATCTTCCCGATAAAGTTATATCGGATTTG
ACATGGGTGACATAGTTTGGTTGCAGGGTACCAATGCGGGTCATATGGTT
CGACCTGCACAATCCAGCGAACGAATTCTTGAAAAGTTGCACCGCGTCCG
CGATTATATTCCTCTTTACTCAAATCTTTTCGAAACATTTTCAATATTCT
TGACCCGTACGTTTTTTCAAAATAAGTATTGTTATCCGCGAACTTATTCC
GGTATGCAGATGCTAATCTTTCAAAAGGGTGTCTTACGAACATAAACTTG
AAAGAGTCTTTTATAACTTTTGGCATCGCGTGTCCCTTGACATGATACAA
GGGTCGAAGACCTCGTTGCGTATGAACCTTCGATTTGACACCCATTTCAC
TAATGTTTGACTTTATACCATCGAACAAAAGTAGCATTCTCTTCCAGTTC
GTACTAGCGACTTTGGGTACGGCGCAATAGAGCACCGGTAGAACGCGACT
AACGAATATATGTCCCTTTTGCTCTCGCTCAAGAAACCTCTGCTGTATGA
ATGTTCTGAGACTCGTACCGCCATCTTTTTTCCGTTTAGCTTGACAAAAA
TGTCGGAGGTAATTCAATCGTTGCTGCTGCACTGGATTCGGTATGAACTG
GAAGAAGATAAAGAAGAAGGTAATTTTATAATTTTCTCGATACAAGTTTT
TTTATAAGAACATCCAGAGTCGTTGAAGCCTTCTTAACTTTTTGAGTTAT
AAGCCTTGAAATGTTCTTAACATGTTCTTATTTTCACCACTTGTGAGTAG
TTTTGTCTATTTTCCTAAGAAATCGGGTGTTTTAGAGTCTGCGAAATCAA
ATCCTTTTAAAGTTAAAGTTTCTGATCTAAAGAATAATTCTTGATATTTT
TTTTCGAATTAANAAGGTAATTTTATAATTTTCATGATACAAGTTTTTTT
ATAATAACATCCAGAGTCGTTGAAGCCTTCTTAACTTTTTGAGTTTTAAG
CCTTGAAATGTTCTTAACATGTTCTTATTTTCACCACTTGTGAGTAGTTT
TGTCTATTTTCCTAAGAAATCGGGTGTTTTAGAGTCTGCGAAATCAAATC
CTTTTAAAGTTAAAGTTTCTGATCTAAAGAATAATTCTTGATATTTTTTT
TCGAATTAAGTAAAAAGAACAACATTTGTTAAAAATTGAAGCAGAAGCTT
TTCGGTCTTATGCCATCATCAGTGCTATAGATAGTAAAAAAATTTTCGAA
ATTTCCACCCTTTTTACAATTCATGACGTCCGATTTCGAAACGCCCAATA
CAGGTCTTTTTCAGTTCTTTTGGTGTCTCTCGGTCTAGCATACTAGGAGC
ACTCGTGGTCTTTCTGGCCAGGCTAGAATTTCTTGAAGGGGATATATGTT
ATCAGTAAAAATAAGATGACTAAAATAATAGATTAGATAATTTTTCTTTA
CATTTGGATAGTGCTTTATGTAAAATATTTAAATAATTGAGGCCAATGTT
TTTATCACAATTCTATTCGTTTGTTATTGTCACTTTAAAAATTTGACACT
TTCAAAAAATAATTGATCAATCAAAACTTGTTGTCAACAATGTCATTCAT
AGTTTACATGTGGTTCGCCTCGTGCACGCGCGTGAACGAGTCATTTATTA
ATTTATGATAATTATTTGCGTGTACAAGAGGGACACGTGTTATGCTTAGA
GACGTTCCTTGATTGATTCATTTTTAAAAAAAGTTCAAAAATTTGATTAG
AGAAAATTTACACCTTAATTAATTAGTTTTGATAGATATTAAAAAACAAA
ATAACAAAAGATAGAAAGAGGGGATAAATTTTGACAGAAAAATTTTATAT
TCTTTACATACATCACGGCTACTGTCGTCTTGAACAAGAGCTCTATTACG
ACTCACAAATCGTGTGCCAGCGGGATATAATTGAAACGCACAATACAGAA
TAGTAATACCAGTCAACAAGGAGAAAAGAAAGAGAGCTGCCCAGCTAGAC
ATAACTCACTTCTTCTCTACACTATTGTTTTACCTCAATGAAATAATGCA
TCAAAAGTATCTGACACTCGATGTAAGAAAAGAGGAAATGAAAGCGAACG
AAAATGAAGAATAGCGTTACAATAGTTTCTTCACACTACCCTCTTTGTTT
CACACCTTTCAATCGATCAGCATGCCTGTGAAACTTTGAAAAAATATCAA
ACTCATTCAAGTGCATCATGAATTATCAATAACGCATTAATTTTTCAAAA
ATCATCTTCGAAAACATCAATTCATCAAAAATAAAGACTTCTCTTTCATA
TGAGCTCATTATTAATACATAGTTGTCCTTTTTCACCAATATTTAAAACA
ATGACAATATATAATAGTCATCTTTCTGGGGAAAGGCTTTTCTATTATTG
ATTTTACTTTTGATCCCCGCGTGACAGTGTTATATTTTCAAATTTTCTAA
AATGTCAAAAATATTCGAATGACTAAAAAGTCTTTTTCAATGTCACTTTC
ATTTTTCTAAAAATAAAGACCAGATTTTTCTTGAAAATGAAGAATTCGAT
CTCTTTAGGCTCCATATAAACACGATTGATATTTTTCAGCCATATTTTTT
TAGGGCTATGGCCGCCTCATTTTTTCAAATAAAAAAGTATTTTTAGAATA
TCCGGATTCATACTTTCAATAGCTTCATCTCAGGGCAAAATCAGTCCCAA
ATCGGACCATTTTAAGGTATATTAGTGGGGTCAATTTCAGTCGGCTCAAA
CCATGGTTGCGCCTACTCAGTCAGTATGTTTTTGGTCATTCTACCTCCAG
ATCATGGCGCGGGCCCTATATATACTCATGTACTTTGCTTCATAATCACA
CGATGAGTTATTATTTCTTATTTGGCGCGCCTTCAAAGAGAGCAATTAAT
CGTTAATCACTCTCTTCAATGACGCGCCAATGTTTACAAAATCGTGATTT
TAATGTTTTTTCTTACTTTTTTTATCGAACGATTTAATTGCATTCGAAAT
TAATTTTGTGAGAAAGAAAATCTATAAACAACAATAAAAGAAAAACAATA
AAAAAAATATAAAACTTTCAGTGTAATTTACTTTCCTAACGGGGAAAAAG
TAACGAAACCGATCGAGCGATTAGCTCGTAAATAAATGATAACTCGTACA
ATTCGAAAATTGCACTCGTGATTTTTTGTTTCAAATTTTTAATTAATTTT
TTAATTAATAACAAAAAAATCACTCGTGCAATTTTCTCGAATTGCACTCG
TACATGTGATTACATATACATACCATGCTGTTCTTAGTTTTGGCACTTTG
AGATCTTCGAAGTGCGAGCTATTAAAATCCTGTTCTTATTTTAGGTCAAA
ACCTTAGGCTACTAAAATGCTTGAAACTCCCATTTCTTGCTTTTCTTAAT
TTGATCTCATTTTTGGTGTTTTTAGTCTCATTCATTGTTCTTTTAAAATT
GTTTTTATAAAAAAGGAGTAATACCATATCACCACAGATTTTATCATTGT
AAGCAGTATAATTTTCTTTACAGGGTCAAATTCGCTAAACATGGCACCAT
AAAAGATGGAAGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053469-exon-scaffold_231-1575043694:273576..274644 | TCONS_00053469-exon-scaffold_231-1575043694:273576..274644 | Clytia hemisphaerica | exon |
| TCONS_00053469-exon-scaffold_231-1575043694:270680..270721 | TCONS_00053469-exon-scaffold_231-1575043694:270680..270721 | Clytia hemisphaerica | exon |
| TCONS_00053469-exon-scaffold_231-1510915933:273576..274644 | TCONS_00053469-exon-scaffold_231-1510915933:273576..274644 | Clytia hemisphaerica | exon |
| TCONS_00053469-exon-scaffold_231-1510915933:270680..270721 | TCONS_00053469-exon-scaffold_231-1510915933:270680..270721 | Clytia hemisphaerica | exon |
| TCONS_00053469-exon-scaffold_231-1491911889:273576..274644 | TCONS_00053469-exon-scaffold_231-1491911889:273576..274644 | Clytia hemisphaerica | exon |
| TCONS_00053469-exon-scaffold_231-1491911889:270680..270721 | TCONS_00053469-exon-scaffold_231-1491911889:270680..270721 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:270680..274644 - |
Blast
BLAST of TCONS_00053469 vs. Swiss-Prot (Human)
Match: CHSTB (Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 8.117e-42 Identity = 87/254 (34.25%), Postives = 140/254 (55.12%), Query Frame = -2
Query: 220 QQRFLEREQKGHIFVSRVLPVLYCAVPKVASTNWKRMLLLFDGIKSNISEMGVKS-KVHTQRGLRPLYHVKGHAMPKV---IKDSFKFMFVRHPFERLASAYRNKFADN-NTYFEKTYGSRILKMFRKDLSKEEYNRGRGATFQEFVRWIV-----QVEPYDPHWYPATKLCHPCQIRYNFIGKMESLLRDAKEVVRR--VDSVHKFPKTWTDGYKVSSNDLMFHLFSTLDEKDILGIYKYYKEDFDAFDYGLP 945
++R L H+ V ++YC VPKVA TNWKR++++ G M + + + H L+ L +++P++ +K KF+FVR PFERL SAYRNKF N F K YG++I+K RK+ ++E +G F+EFV +++ + EP++ HW LCHPC I Y+ +GK E+L D+ V++ V S KFP T+ + +++++ F + + +Y+ YK DF F+Y +P
Sbjct: 98 KRRVLTPNDLKHLVVDEDHELIYCYVPKVACTNWKRLMMVLTGRGKYSDPMEIPANEAHVSANLKTL---NQYSIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDDVKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAGVGSYLKFP-TYAKSTR-TTDEMTTEFFQNISSEHQTQLYEVYKLDFLMFNYSVP 346
The following BLAST results are available for this feature:
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