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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053534 ID=TCONS_00053534|Name=TCONS_00053534|organism=Clytia hemisphaerica|type=transcript|length=701bp
ttttaaaatttatagaatcttcatttttccgTTATTCTACGGAATTCTAT
TATTTTGCTAAACAATCTGAGAATGAGTGACTAAATCTTCtcctttttta
ggaaaatgcaACCACTGAGGAACGTGAAAATGGTATTTTGAACATCCACT
TGATCTCAAAACAACCGAGAAATTTAACAATCATATTAACCAGTTCATAC
AGTCAGTCTATTGATTTACCGGACGCAATCGTCGCAAGCGAAGTCGAATC
TGTAGCAGACATTGAAAAGAGGCTGTCAGAGATAACTTCTCATGATATTT
GTGTCTACTCTACCACCTCACGATCAGACGAATTTACATTTCCACACCCA
AAGTCTGAAACAGCTCTATACACGCTGGTGAATTTGGACATAGAGGAAAC
CCTCGTATTAGATGTGTTCAGGCGATTGACCTTAAATATATCAACAAAAT
GCAAGAAATGTGATGTTTCTGGGGTTTTCCAGAGAGAGTTTATCATCAGG
GGAACATCCACGGATGTAAAATACCTGATCACCTTATTTAGCTTGAAACT
GAGAAGTGAACAATGTCAGGATggtttcttttgtaaaaaattaaaactac
gGTTGGCAGATGATAATTTCAATCGTGGACTTTCGAAAAAATCGATATTG
GTTAATTTACCAGCAAATcggaaagaaatttattttcaagcCAAAAAGTG
A Run BLAST on NCBI transcript from alignment at scaffold_233:56206..57616+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053534 ID=TCONS_00053534|Name=TCONS_00053534|organism=Clytia hemisphaerica|type=transcript|length=1411bp|location=Sequence derived from alignment at scaffold_233:56206..57616+ (Clytia hemisphaerica)
ttttaaaatttatagaatcttcatttttccgTTATTCTACGGAATTCTAT
TATTTTGCTAAACAATCTGAGAATGAGTGACTAAATCTTCtcctttttta
ggaaaatgcaACCACTGAGGAACGTGAAAATGGTATTTTGAACATCCACT
TGATCTCAAAACAACCGAGAAATTTAACAATCATATTAACCAGTTCATAC
AGTCAGTCTATTGATTTACCGGACGCAATCGTCGCAAGCGAAGTCGAATC
TGTAGCAGACATTGAAAAGAGGCTGTCAGAGATAACTTCTCATGGTACGT
ATACAGCGTGTCTAACTGAAAAAACCGAAAATAGTATTACAGttgattct
ctctaattcgagaccaataattttattttaattatagAAATGCTCGTATT
ACaaagagtaatttaaaccactttccagttaaggggaccaatattttagt
tcgaattacagaaagattcgagtaatgaagattcgaattagagagcgttg
aCTGAATATAAATGAGAAACTGAGAGTGAAATGAGCGTGAAAGTTTTCCA
AAGAGGTGAATATATAAAATCTTTTGCACCTATTAGTATAGTACGTCGGA
CATGGTAAATCGTACTTCTATTATTCAGAGATTTGAACACGACTCTGCCA
ACGCACCGGACTTTCGAAAAACACCGGACGCGAATGTCCGGTTTCAATGA
GAAAATTTATCAGTGGTCAATCCAATAGCCGCTCCTGTACGTCCGGTGCA
caactttttttgaaacttttgtggTTAATTAGTATGTAGTCCttgttaaa
actttttttttcaaaccgaATTGTCCGGTGTCAAGAATTCCCGTAATGTA
ACACCAGACAGTTGTATCCGGTATAATTAAATACAGCACCGGACAGTCCA
GTGCGTCGGCAAGGTTACCGAATTACAAATAACCTGAGTTCAAATTATGG
GCTGGCATCACGTTTACTGCTAACCCACGATCTTTCACTACTTCTTTTTT
CTAGATATTTGTGTCTACTCTACCACCTCACGATCAGACGAATTTACATT
TCCACACCCAAAGTCTGAAACAGCTCTATACACGCTGGTGAATTTGGACA
TAGAGGAAACCCTCGTATTAGATGTGTTCAGGCGATTGACCTTAAATATA
TCAACAAAATGCAAGAAATGTGATGTTTCTGGGGTTTTCCAGAGAGAGTT
TATCATCAGGGGAACATCCACGGATGTAAAATACCTGATCACCTTATTTA
GCTTGAAACTGAGAAGTGAACAATGTCAGGATggtttcttttgtaaaaaa
ttaaaactacgGTTGGCAGATGATAATTTCAATCGTGGACTTTCGAAAAA
ATCGATATTGGTTAATTTACCAGCAAATcggaaagaaatttattttcaag
cCAAAAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053534-exon-scaffold_233-1491911889:56206..56499 | TCONS_00053534-exon-scaffold_233-1491911889:56206..56499 | Clytia hemisphaerica | exon |
| TCONS_00053534-exon-scaffold_233-1510915933:56206..56499 | TCONS_00053534-exon-scaffold_233-1510915933:56206..56499 | Clytia hemisphaerica | exon |
| TCONS_00053534-exon-scaffold_233-1575043694:56206..56499 | TCONS_00053534-exon-scaffold_233-1575043694:56206..56499 | Clytia hemisphaerica | exon |
| TCONS_00053534-exon-scaffold_233-1491911889:57210..57616 | TCONS_00053534-exon-scaffold_233-1491911889:57210..57616 | Clytia hemisphaerica | exon |
| TCONS_00053534-exon-scaffold_233-1510915933:57210..57616 | TCONS_00053534-exon-scaffold_233-1510915933:57210..57616 | Clytia hemisphaerica | exon |
| TCONS_00053534-exon-scaffold_233-1575043694:57210..57616 | TCONS_00053534-exon-scaffold_233-1575043694:57210..57616 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:56206..57616 + |
Blast
The following BLAST results are available for this feature:
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