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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053537 ID=TCONS_00053537|Name=TCONS_00053537|organism=Clytia hemisphaerica|type=transcript|length=107bp
AGACtttggaaaacaaaatcaaaactctTGAAATGCAGAACGAGATACAA
ACACTCAAACATGGCAATGAAATTGCTAAATTGAAGGCGAAACAGGAGAA
AAACGAA Run BLAST on NCBI transcript from alignment at scaffold_233:109414..117050+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053537 ID=TCONS_00053537|Name=TCONS_00053537|organism=Clytia hemisphaerica|type=transcript|length=7637bp|location=Sequence derived from alignment at scaffold_233:109414..117050+ (Clytia hemisphaerica)
AGACtttggaaaacaaaatcaaaactctTGAAATGCAGAACGAGATACAA
ACACTCAAACATGACAATGAAATTGCTAAATTGAAGGCGAAACAGGAGAA
GAACGAAGAGAAGGTCGTTGTAAGCTTGACTGAAAATGCTTTGAAAGAAG
AAAACCAAGCTCTCAAGAACGAGATACAAACACTCAAACATGACAATGAA
ATTGCTAAATTGAAGGCGCAgcaggaaaacaaaaataatggaAGTCAAAT
GGCAAAAGAAATCGAAGCACTCAAAATTCAGAATCAAGCTTTCGAGAAAA
AAGTGGCTGAAGCTGATCTGATAAATGAATTCGAAGACCTTAAACAGGAA
ATGGGCGGCTTGAAAGCCCAAAATGGCAAATTGAAAAATGACTTTCAAGC
CCTTGAAAATAAGATGGGCGGCTTGAAAACTCAAAATGGCAAATTGGAAA
AAGACTTTCAAGCCCTTGAAAATGAGATGGGCGGCTTGAAAGCTCAAAAT
GGGAAATTGGAAAATGACTTTCAAGCCCTTGAAAATGAGATGGGCGGCTT
GAAAGCTCAAAATGGCGAATTAGAAAAGGAAGTTCAAGcccttaaaaatg
gaatagaagGCTTGAAAGTTGAGTTGAAAGATCAAATGCAAACTCAAAAA
GGCAAGCTGGAAAATGAAGTTCAAGCCCTGAGAAATGATTTCGAACATTT
GAAAACAGATTTTAATCGCCGGTTTTTCGAAGGAGcagaaaagtttttgt
tgaatTACAATACAGGGAGAGAAGATTTTTTCGGTGATGATTATAAATTG
TGGTATGAAGATATGTCACGTTCGATGGAAAATCGTAAACAATATGTCga
tcaaaagtttgttttgattcgtaaagacgtgaaaaagtatCGCAAAGAAT
TGTTTTTTGGACCAAAGGCAAAAGGAGTTCAATAcaatgaaaaagatttt
gacTTAATAGTTGAAggattggaaaaaagattaccgaaaaatgtaaatgt
ttttcttcttcatccaAATGATTGGAAGAAGTGTTCGAAGATggaatttt
tcggaaattttgaagAGGTTTATTGGTGGAGATATGAAAACATTCCTCAA
GATTATTATTTTGGTGGAGAATACNTATTGGTGGAGATATGAAGACATTC
CTCAAGATTATTATTTTGGTGGAGAATACTCTGTTATTATGCTTGCCCAA
TTTGAGTAAAGAAGGACGTACCTTTTTCACATAAGATAATCCCTGGGGGT
TATGCAAGACCTAAGACTTTTTGACTTAGATTTGACAAACGAGAAAAATA
AAGTACATCGATATCACGGAAATAATGGTTTTACATTGATGGAAAGGTGC
AAACATTTTATTTCAAGACTAAATTTCATTTCaagacaaaatttcataat
ttttccaaaatccagataatatattttatgagaatatttatgataaaatt
ggcaaaaaaaataagaataaggtAAGAATACCATCATCATGGATCTTAGC
CTAAGAATGCCATGAACATCGGTATTTTTTAGTCGGTATATGTtacactt
ttgaaaaaaacgtgCATTTTTGCAAATGCAAAAtgcaaaattcttaaaaa
ggcTGCAAAGAAACTGACGTCTTTAAGGGTGAGAGAATACTGCCGCTGAG
CAGTATTTTTCGTTTGATTTGTTTTATGTTCCTTTTGTATTatagcattt
tcattttctctagGTTAATNtttgttcttataaaaaaacgtgtagaacaa
caaattaaattggtctcgcctaagtaATAAAATGTGTAGGAAATAAGAGA
ATTTTCGATCtccattttttcttcaattttcatcttcattttcaaatttt
tcaggaaattctAAAAATACTATTTTATAAAGCCACTCGAAATTGTCTCT
CCAACGATGTATTATCTTTCATTAGATCTCTTTTTCCTCGAAAGcaatgt
ttgaaaaagtacAGACTGCAAATTATTTCAGAATAGACTTTTGTAAGTAA
TATTTCTTACTttttgatccgtctctttagttgttGAGCATCGAGCAGag
agagaggcatcaagtaccaatttgggaatctttggtttAACCTAGACTGC
TTGCATCCAcaaacggattcgtgctcctcaTAGGGGATGCTTGATAAGTG
ATATTTCCTTTGTCTAGAAATTTGCcattaaagacatttttagctggtgA
GGGCTTACAAATATAAGATTACGTATTGTTTAATTTCTCTGTGAAGCACC
AAATCatcgttttgttgtttttcttcctccttttttgtgttatattgaga
ttttgtaaaatatgAGAAATGAGATTTAtcaacacagactctatccgccg
cgaaacatattacgtttacgttttatataatatacaaactatgttatatc
ataataacatattatacggacgatagcatcatctaagttcgaacatgatt
ctgagtagagggttcgttgttgcgtgtgtttaacacaatgattgttttta
caacagacAATAGTGAAGTTAAGttaatcggtaaaatcacgacgataACC
GAacatttaacaggctagtgactttcaaccaatcagatttcgtattttca
ctagactattacatttttcgtatgtcgtcgtgattatcctggtatgctta
acctcaatattatgattaaaaagcattaactttctttacaattttcatga
cgttactATATGTACTCATTAATCAAAGAAAGAGATTAGCACGCTCATAA
AACAAACTTAATAACGACAATACAGATCTATTTCATCATGCAAATATCTA
ATCGCTATATATTGAAGCTATTATTGAGCTCAGCAGTCCAACGAGCATAA
TgcttattcttttattttgttttagaacTTCATAATTAAATACACTTCTA
TCTGTTTAATCAACTCAAAGTAACGTCATCATGATGGAGTTTTTTAAGTT
GATggagtgtttttaaattgatgGAGTGTTTTTAAGTTGATTTTGTGTCT
TTTGGTTTTTACTTGCAGTGTAGTATTTTGTTTATTGGTAGTATCTACAC
ACAGTTCTCGAAAGCCCTTTTGAAATATACTTTAAGTAGATTAATTTTCA
TGTTGACTTTTTTTCACGAATCTGGAATCTAAAAATTTCGCAAGGATCAA
AGTTCGCGAATCAGCCCtgttttctttaatttcttttgaggttttgggaa
aaattaggatttcaaatatttcgcgtggactaaatttcgcaaaaatcgcC
AAGATTAATCCACGTTAAATTTACTCCACTGAAAGCAAATTTCATAAGAG
CTTTCGCAAATTAAACTATACTTTAGGGCAAGTTAAGCAAAATGAATGAA
GCACACAGCTCAGCTGATCGTGAACGAACAATTCACGAAGGAAACCGAAG
CAAGAAATTGCTGAATTGAGagtgaaatatgaaaaagagactttggaaaa
caaaatcaaaactctTGAAATGCAGAATGAGATACAGACACTCAAACATA
ACAGTGAGATTGCTAAATTGAAGGCAAAGCAGGAGAAAAACGAAGATAAG
GTCTTTGTAAGCTTGATTGAAAGTGCtttaaaagaagaaaaccaAGCTCT
CAAGAACGAGATACAAACACTCAAACATGACAATGAAATTGCTAAATATA
AGGCGCAgcaggaaaacaaaaataatggaAGTCAAATGGCAATAGAAATC
GAAACACTCAAAATTAAGAATCAAGCTCTCGAGAAAACAGTCGCTGAAGC
TGGTctgaaaaatgaattcaaaGCCCTTGAAAATGAGATGGGCGGCTTGA
AAGCTCAAAATGACAAATTAGAAAAGGAAGTTCAAGcccttaaaaatgga
atagaagGCTTGAAAGTTGAGTTGAAAGATCAAACCCAAATTCAAAAAGC
CAAGCTGGAAAATGAAGTTCAAGCCCTGAGAAATCATTTTGaacatttga
aaacaaaagttaataaAAAACAAGAAACTGAAGGTGCTCAAAAAGCTGTG
CAAGAAAAAGTCCAGAAGCCTTTGGGCAATATACCTGACCAGTTTTTCGA
AGGAGCAGAAAAGTTTTTAACGAATTACAATAGAGGGAGAGAAGACTTTA
TCGGTGAAAATTACAAATTGTGGTATGAAGATATGTCACGTTTGATGAAG
AATCGTAAACAATATGTCgatcaaaagtttgttttgattcgtaAAGACGT
GAAAAGGTATCACGAATATTTGTATTTTGGATCAAAGGCAAAAGACGTTA
AATACAATGAACAAGATTATGATCTAATAGTTGAAggattggaaaaaaga
ttaccgaaaaatgtaaatgtttttcttcttcatccaAATGATTGGAAGAA
GTGTTCGAAGATggaatttttcggaaattttgaagAGGTTAATTGGTGGA
GATATGAAAACATTCCTCAAGATTATTATTTTGGTGGAGAATACTCTGTT
ATTATGCTTGCCCAATTTGAGTAAAGAATGAcgtacttttttatataaga
taaaCCCTAGGGGTGTCATGCAAGATCAAAATACTTTTGACTTAGATTTG
ACAAACGAGAAAATTAAAATACATCGATTTCACGGAAATAATGGTTTTAC
ATGGTGGAAAGGTGCAAACATAtcatttcaagaaaaaatttcattctttt
tccaaaacccagataatatattttataagaatatttatgataaaattggc
aaaataaataaagaataagGTAAGATACCAACATCATGGAATTCGACCTA
AGAATACCATGAACCTTTATTAAAGTCGgtgtttttttacacttttggca
aaaacgtgcattttctaaaaataggtttttaaaaataaaaacaaaatggt
cggaaaaagATTGATTATTCGATTCCATTTCTCCCGAGCCATTTAGAGGT
ACTAAACCAGGTATAACCTCCCAAAGTTTGGAGGAATTCAATTTtatctt
ttatcatttttttcaatttcactcaatttttttatctagGTATTTTTAAT
TGATAAACATAAAACAAATCAATGCTACGAACAATAATACTTAAAAAGGC
TGTAAAGAAACTGACGGCTATAAGGTTGAGATATTACTGCCGCTGAGCag
tattttttgtttgatttgttttatgTTCCTTTTGTATtaaagcattttca
ttttctctagGTTAATTGGTTCgtaattatattttatgttgcttttgtTG
TGTGTTAATTGTCTTAGAAATCATGTATCATTTGAATAGCATATTAATGT
TTTGTTACTCCCGTGAGAGTTTTTGTCTATTTGTTCTTATAAGTCATAAA
ATGTGTGGGAAATAAGAGAATTTTCGATCtccattttttcttcaattttc
atcttcaattatATTTTATCTCTTTTGTTGTGTATTAATTGTCTTAGAAA
TCATACATCACTTGAATTAGGAAATTTTCGATCtccattttttcttcaat
tttcatcttcaattatATTTTATCTCTTTTGTTGTGTATTAATTGTCTTA
GAAATTATACATCATTTGAACATCATATTAATGTTTTGTTACTCCCGTGA
GAGTTTTTGTCTATTTGTTCTTATAAGTAATAAAATGTAGGAAATTTGAG
AATATTCGATCtccattttttcttcaattttcatcttcaattatATTTTA
TCTCTTTTGTTGTGTATTAATTGTCTTAGAAATCATACATCACTTGAATT
AGGAAATTTTCGATCtccattttttcttcaattttcatcttcaattatAT
TTTATCTCTTTTGTTGTGTATTAATTGTCTTAGAAATTATACATCATTTG
AATATCATATTAATGTTTTGTTACTCCCGTGAGAGTTCTTgtgtattgtt
cttataagtaATAAAATGTGTAGGAAATTAGAAAATGTTCAGCAGAACAA
ATCTTCATTGTCTTCTTCAATTATATTTTATCTCTTTTGTTGTGTATTAA
TTGTCTTAGAAATCATACATCACTTGAATTAGGAAATTTTCGATCtccat
tttttctttgatttcatctTCATTTAGAGCTAAATTTTAGCTCATGTTGA
TTTTGCATTCAGCATATCACACGCCCGACAGCATATGACGCGACGGGTTA
AAACTGTACGCCCGCTTCTACTCCGCCCAGTTCCTTGGACTTCGACTAGC
AGAGTTTGAGTTCAGACACTTAGTTCAGTTCACCTTCTCATCCAATCAAc
acaagattttttgaaataataattGATAGTAAAAATGGCTTCTTCATAAA
TCAACTTGACGACCGCACCTGGAATTCTACCCATCTATACACTTGCTTCT
TCTGCAAATTTCCACCACCCTTGTTGAGCTTGAAATGTCTGAACTTTTGG
TAAATTGATAAATTCAGGGACAAAGTAGTATAAGTAGGTTAACATGCCTC
AATATcgccctaaaaataagaacatgataagaacaaATTGAGCGAATCCG
AGcctaaacaaaaatttaaaaatctacgGGCTCTTATAAACAAAGGGTAT
ATGTAAATATTTGGAGTGCCAATTAGAATTTGTTATCTAACCATCGTTGT
ACCATAGACATATGAATGCATATGTCTATATGCTTGTAACCTACGGTATT
AgctgtttgttttttcatttcatgatggTATTCTTTTTTGCGAAAGTCAT
CCTGGATACATAGTGTTGACTACAGCGTGTTTTTTATGTGTGTATCATTA
CGGTTTTTTGCATTTTAATGTTAGGCGTTCAAACTTtcacgaaaaaatat
ttttgagattttcgcAAGTTTTGGGCTTATTTGCAAAATCAGATTCTCAA
CTCTCAATAGAATAATTTGTAAAACTTTAAACTTGCAAAGAATTCTTTAC
GAAAGTCGTTGAATTATTAGCATATCTTTAGCCCTAAGATTCCTCTTAAA
GGCCACACAAACGTTTTCATATTATCACAGTCAATATTGATTtaaaactt
ttcacttttttcccaGATaatcgcgaaaaatatttttctcttcaattttt
cgaaagttaTAGTCATAAATCTTCTTTATGCCTGCTAGTAAAGAATATAG
CTTCAATCTTGTTATCACAAGTTAATTTTCTTGAGAAGGGATAACTGAAT
AATTGAGGTTTTTGGTTTGGCTTCCAGGCTCTATagttttgaataaaatg
ttCAGTTCTTTTCATTTGTCTAACTATCTTCGGAATTCCAAATTATGATA
TTCGCTAGAAGGGTACTTTGAAGTTCTCTTATTTTCTTGCTAAAGTGAAA
CATTGTTCCATTTGATatctcatattttgaaaatagttaaACTAGAATAG
TTTTCTAGCGAAATTCCCACAGTACCATAGCAGATAGAAGGAATCTACGA
GGCAAATAAAAGCATTAAACCATCTAATCcttattaaaagtttttaaaat
ttttttctccataggacaaaataaaaaatgaatgaagCACACAGCTCAGT
TGATCGTGAACCAACTATTCACGAAGAACACCGAAAACTGAAGCAAGAAA
ATGCTGCATTGAGAGCGAAATATGAAAAAGAGACtttggaaaacaaaatc
aaaactctTGAAATGCAAAACGAGATACAAACACTCAAACATGGCAATGA
AATTGCTAAATTGAAGGCGAAACAGGAGAAAAACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053537-exon-scaffold_233-1491911889:109414..109473 | TCONS_00053537-exon-scaffold_233-1491911889:109414..109473 | Clytia hemisphaerica | exon |
| TCONS_00053537-exon-scaffold_233-1510915933:109414..109473 | TCONS_00053537-exon-scaffold_233-1510915933:109414..109473 | Clytia hemisphaerica | exon |
| TCONS_00053537-exon-scaffold_233-1575043694:109414..109473 | TCONS_00053537-exon-scaffold_233-1575043694:109414..109473 | Clytia hemisphaerica | exon |
| TCONS_00053537-exon-scaffold_233-1491911889:117004..117050 | TCONS_00053537-exon-scaffold_233-1491911889:117004..117050 | Clytia hemisphaerica | exon |
| TCONS_00053537-exon-scaffold_233-1510915933:117004..117050 | TCONS_00053537-exon-scaffold_233-1510915933:117004..117050 | Clytia hemisphaerica | exon |
| TCONS_00053537-exon-scaffold_233-1575043694:117004..117050 | TCONS_00053537-exon-scaffold_233-1575043694:117004..117050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:109414..117050 + |
Blast
The following BLAST results are available for this feature:
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