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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053547 ID=TCONS_00053547|Name=TCONS_00053547|organism=Clytia hemisphaerica|type=transcript|length=3524bpRun BLAST on NCBI protein sequence of vasa protein >TCONS_00053547-protein ID=TCONS_00053547-protein|Name=vasa protein|organism=Clytia hemisphaerica|type=polypeptide|length=689bp MADEWDEGTSSGNTGFGGGSSGGFGGGSSGGFGGDSNDNDDSGGSFRGGRRun BLAST on NCBI transcript from alignment at scaffold_233:463235..473977+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053547 ID=TCONS_00053547|Name=TCONS_00053547|organism=Clytia hemisphaerica|type=transcript|length=10743bp|location=Sequence derived from alignment at scaffold_233:463235..473977+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:463235..473977+ >TCONS_00053547 ID=TCONS_00053547|Name=TCONS_00053547|organism=Clytia hemisphaerica|type=CDS|length=16560bp|location=Sequence derived from alignment at scaffold_233:463235..473977+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053547 vs. Swiss-Prot (Human)
Match: DDX4 (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=1 SV=2) HSP 1 Score: 500.745 bits (1288), Expect = 4.527e-161 Identity = 253/457 (55.36%), Postives = 335/457 (73.30%), Query Frame = 1
Query: 880 VTYVPPEPSEAEEEIFQTIAQGINFDQYDNIPVEITGPGEMPTAVRSFEEAGLAPGVLENIKKAKYTKPTPVQKYALPAVLAKRDLMACAQTGSGKTAAFLLPVLTGILEHRDEFTSQLSEVQAPIALVIAPTRELATQIFNEARKFSHGTSIRPVVVYGGVSVAHQLRQVEAGCHLLIGTPGRLKDFMGRRKITLENLKYLVLDEADRMLDMGFMPDVKTIVSDFNMPEKEERHTLMFSATFPEQIQKLASDFL-NQYVFITIGKIGSTHSGIEQKVVEIEDSGKRDRLVDILGNEGTNRNLVFVQTKRLADFLASYLCQNGFPTTSIHGDRYQQQREEALREFKRGEQTVLIATQVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFTRGKDDGLARALVKTLADAEQEVPDWLEEVAETALGTGY--GPKGGRFASKDTR 2241
VTY+PP P E E+ IF GINFD+YD I VE++G + P A+ +FEEA L + NI KA YTK TPVQKY++P +LA RDLMACAQTGSGKTAAFLLP+L ++ H S+ E+Q P +++APTREL QI+ EARKFS GT +R VV+YGG + H +RQ+ GC++L TPGRL D +G+ KI L+ +KYLVLDEADRMLDMGF P++K ++S MP KE+R TLMFSATFPE+IQ+LA++FL + Y+F+ +G++G ++Q V+++ KR++LV+IL N G R +VFV+TK+ ADF+A++LCQ TTSIHGDR Q++RE+AL +F+ G+ VL+AT VAARGLDI +V+ VIN+DLP I+EY+HRIGRTGR GN G+AISFF D+ LA+ LVK L DA+Q+VP WLEE+A + G+ +G FAS DTR
Sbjct: 244 VTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH-DAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMM-HDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTR 698 The following BLAST results are available for this feature:
BLAST of TCONS_00053547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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