TCONS_00053551 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053551
Unique NameTCONS_00053551
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053551 ID=TCONS_00053551|Name=TCONS_00053551|organism=Clytia hemisphaerica|type=transcript|length=3595bp
CACGAGCTCTTTTCCATCAAACCAGCGTGGTCCCGCATTCTAAACCCTTC
TTCTCTTTTCTCCAACTCGGAGAAAGCACGTGTGGGATTTTcccaaattc
aaaaaattgtaaagactttttaccacaaatttactttgaaaagtaaaaaa
taagcttCTACTGCTAATAATACGACAACATGGCTGACGAATGGGATGAA
GGAACATCCTCAGGAAACACGGGATTTGGTGGTGGAAGCTCAGGTGGTTT
TGGCGGTGACTCAAATGATAATGATGACAGCGGTGGTAGTTTCAGAGGTG
GAAGAGGTAGAGGTAGAGGACGTGGCCGAGGAAGAGGAAGGGGAAGAGGC
GGATTTGGAGGATCTGATAACAATGACTCAAATGGTGGTGGCTTCGGAGG
AGGTTTTGGTGGAGAAAGTTCAGGTGGTGGCTTTGGTTCAGGCGGTGGTG
GCGGTGGTTTTGGAGACGATTCTGGTGGAGGTTTCGGTGGGAGCTCTGGT
GGTTTTGGAGGTGATGACTCAGGTGGCTTTGGTGGAGATTCTGATGGAGA
TGGTGGCCGCGGGAGAGGTAGAGGACGTGGTCGTGGAAGAGGCAGAGGAC
GCGGTCGTGGTGGATTTGGAGGTGGTGATGGAGATGCAGCTGGAGGTGGT
GGTTTTGGTGGAGGAGATGACACTGGAGAGGTTGATGAAAATGGTGAACC
CATTAGACCTCTTCATGAAGTTGATCCAGACAAACCAGCACCAGTTACAT
ATGTACCCCCAGAACCATCAGAGGCTGAAGAAGAGATTTTCCAAACAATT
GCTCAAGGAATCAATTTCGATCAATATGATAATATTCCTGTTGAAATCAC
TGGCCCTGGAGAGATGCCAACTGCTGTCAGAAGTTTTGAAGAGGCTGGTC
TTGCACCTGGGGTCTTAGAGAACATCAAGAAAGCTAAATATACTAAACCA
ACACCTGTCCAAAAATATGCCCTCCCGGCTGTGTTAGCAAAACGTGATCT
GATGGCTTGTGCCCAAACTGGATCAGGAAAAACAgcTGCTTTCCTCTTAC
CTGTGTTGACTGGCATACTTGAACATAGAGATGAGTTCACCAGTCAGTTA
AGTGAGGTTCAAGCACCTATTGCTTTGGTAATTGCACCAACTCGTGAACT
TGCAACACAGATCTTTAATGAAGCACGAAAATTCTCTCATGGAACCAGCA
TTCGACCAGTTGTTGTTTATGGTGGTGTCAGTGTTGCACATCAGTTGCGC
CAGGTTGAGGCTGGTTGTCACCTTTTGATTGGCACACCTGGACGTTTGAA
GGATTTTATGGGTCGTAGAAAAATCACACTTGAAAACCTGAAGTATCTTG
TTCTTGATGAAGCAGACAGAATGCTTGACATGGGTTTCATGCCAGATGTA
AAAACGATTGTCTCAGATTTCAATATGCCTGAAAAAGAAGAACGGCACAC
CCTCATGTTTAGCGCAACATTCCCCGAGCAGATTCAAAAGCTTGCTAGTG
ACTTTCTTAACCAATATGTTTTCATAACTATTGGTAAAATTGGTAGTACA
CATTCTGGTATTGAGCAGAAAGTTGTAGAAATAGAGGATTCCGGGAAGCG
TGATAGACTTGTTGACATTCTTGGCAATGAAGGAACCAACAGGAATCTTG
TTTTTGTGCAAACGAAACGATTGGCTGATTTCTTAGCAAGTTATTTATGT
CAGAATGGATTCCCAACAACAAGTATCCATGGGGATCGTTACCAACAACA
ACGTGAGGAAGCTTTGCGAGAATTCAAGAGAGGTGAGCAAACAGTCCTTA
TTGCCACCCAAGTTGCCGCTCGTGGTTTGGACATTGCTGATGTTAAACAA
GTTATCAACTATGATCTTCCTGATGAAATAGAAGAATATATCCATCGAAT
CGGTCGTACCGGACGGATTGGTAACAAAGGAAAAGCCATTTCCTTTTTTA
CACGTGGAAAAGATGATGGGTTAGCTCGTGCACTTGTCAAAACCTTAGCT
GACgCTGAGCAAGAAGTTCCTGACTGGTTGGAAGAAGTTGCTGAGACTGC
ACTTGGTACAGGCTATGGACCAAAAGGTGGTCGATTCGCTTCCAAAGACA
CTCGTGATGGTGGCGGTGGCGGACAATTCAACGCCATGGGTAACAATGAT
GGCTGGGGTGGCGGTGAAACACCTGCAGCCGGTGGTGGTGGCGGTGGCGC
TGCTGAAGAAGATGATTGGGATTAAGAAATGCAGGTTAAAAAGCGTCGCC
ATATGGATAAGGTTGTTGTCACTCACGTTTGTTTATGCATTTTGCTTGGC
AACAGAATTGGACTTGGTTGGTTCAGTAACTTGACATCAAATTTGCATTC
TATTTTTCTTCAACTTTATCCTTGCCGCTGAGAGCACCTTAAGGGGTGAG
AATTTTAAACAGTGGTGTACAAAAGGACgttgtttaaaaaatttgttcat
aTTCAAGAAACAGTTGGTTTGTTGTTACTATAGAAActaaaaacgaaaac
aaaaactTGATGATACTATTCGTGTATTGGACTTTGATTCGATATATTAG
AATCGGAAACTTTTTTACGATTGCATAGGAACCTTGAACTCGAATATCTT
TCATACTTTGgtaattcttttgaaaaagagttCTATCAGAGAACCTTCCG
TAAAGATAAAATACTACGAAAGACATTCGATTTCAGATCTGAtctgtttt
ttatttcagaccTGTTTTCTTATAGGTGTAAATAGTCAGGAACTTTTGtg
atttattttcaaagatttattttattcttatatAGTCTTTCTTATGCTTA
TTTAGTAGCCACCTAggttttattttataattttgcaAACCCTTTTGATA
TTCTTCATAACGTCCAGCCCTATCGATTATTTCTTGAATCATTTTACAAC
GATATCCGATAGTCTTTGTCTATAGATTCGCTCTCAGTTGTTATCAGcgt
caatagaccttatcggagtttttgatttttctaaaaaagcgatgcattgt
gggattgtttcgagtgtattacaatagaaatctcttggAATtactcgagg
gaattctattgtcatacactcgaaacaatcccacaatgcatcgctttttt
agaaaaatcaaaaactccgataaggtctattggtgtcaagtattcatgat
atacaccattacgatgtcttccacggacccaacagcagACCCAATATTGA
CTGGTTTTACATCGcatacaaccaatcagctattgggtcttctgacattg
caatggtgcatatcatgcaTTTGAATTGTGTTTATTTTCCGGTAAGGATT
TTCTTCTATCTATGCAAGATTGTATAACGGtaatatttaaagaaattata
CATTGCTTGCCCTAGGTTATTAGTTCTTCATAAGAAATAACAATTAATTA
AgcatttgaaaaatcatttttttaattccCCTTCCCCTTAAAACTTTTCC
CTCCTGCCTAACTgacctttttcaaaatccaTTCCTAATAAGTGAGATGT
TAGAGAAAGTTTGGATCTTAAGGTTGGACAACTTTCTGACAGTAACagaa
attatatattatatatatctATCTATGATTATATCAGTTTCTGGG
Run BLAST on NCBI

transcript from alignment at scaffold_233:463347..473977+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053551 ID=TCONS_00053551|Name=TCONS_00053551|organism=Clytia hemisphaerica|type=transcript|length=10631bp|location=Sequence derived from alignment at scaffold_233:463347..473977+ (Clytia hemisphaerica)
CACGAGCTCTTTTCCATCAAACCAGCGTGGTCCCGCATTCTAAACCCTTC
TTCTCTTTTCTCCAACTCGGAGAAAGCACGTGTGGGATTTTcccaaattc
aaaaaattgtaaagactttttaccacaaatttactttgaaaagtaaaaaa
taagcttCTACTGCTAATAATACGACAACATGGCTGACGAATGGGATGAA
GGAACATCCTCAGGAAACACGGTAAGCTCCATAATTTATTGCATTGTAGG
AAGCTTTTTGTCGATCGAATAAACATGTTTTTATTGTCAGGTATATAGTT
AACAAATTACTTTATGAAACGAAATAACAAGGATCAAAGAGTCTTTCTTT
GGGGCTCTAGTTATTATCTAATAGGGTTGGTGTATTACCAGGTATTACAC
CTTTCCAGTAATCCAGACAGAGTCAATTGAACAAGTTCAAATGAAAATCG
CGATCGAACCAATAGAATGTAATGTGTTTGATTGTATTTGCACAACCATT
TCCGTTTGGTTTGGAAACGTGAACTTCTGATGTTTAAATatttcaataca
cctttcccgtaattcaaacttctcagaaataGCCCGGGAAAATGTGAGCT
CCACTGTCAGTCAGgaacaagtgcaaattaggatacctgTTGGCAATCTC
TTCTACTCAGGAGAGTTGTATCCTAATTTTGAGATTTAGGTACATCCTTA
CTGCTTTGATCCGCGATTGGattttttcatcaagatttgcaccactgacc
aaaatttcaagtaatttgCTTTTGCGTATGCTAGTTAGCACATTTTGAGC
TAGCTAGTGGTTTTGGGCTATAGTTTTGCATTCCGCCAAACTCAATGAAA
TTCAGTACACAATCTCATTTGCTTATTATTTACATCTTGGAAGTGGTAAG
ATGGGGCGGATGTCTCTGGTTGGTGAAAAATAcaggttttttggttttta
gtatcCTAATTAGGATGACGTTTAGGATGTTGATTGCTACTTTGGATACT
TTTTTGTATCCAATTTAAGATACTCTCCTATGTAGGAGAGGCCGAAGGTA
TTctaatttgcacttgttcttgactgactggagtgtataaaattgtttgg
ggaGATAAAcgaacgcgtttttgcctgcgaggggttaaggatggaaaatt
ttcattctaggtatggggaactcaccaaaatcaattcaaaattgaaaaac
atctggttttatgagatgaTGTTGTGATTAATTGGATGTATAGCATATGC
ttagtttttctttcatttatatCAACCAGAATTATTACGGTTTAAAAACA
ACCATTCTTTCCAtttattcttgaattagaactaccttagggaaaacaat
aagtgttaaattcatcaaattacagctttttatgCTTGAAGGGGGGACAG
AAATTTTTGGAGGCAGGGTGGGGAAAAATGAggggggatggaaaattttt
attctaggcatggggggaaGAGACTCTGAAGGACACTATGAATCAATAAT
GATCGGTAATAATTGAAGGTGATCAGTGACCacttatcgattctatcggt
gatcgaatactcagacgatctcaatcaaacggaattgactgattgaaatt
cgattgtcgaatgcaatcaaatctcaatcgaacgtcaaaattctgggtaa
tatttgattgttgttcgactggttcgattgtcgattccgttcgattgaga
tcgtctggtatCAGCTTAGTGATCTGGTGATGGTGGCTCAAAATTTGATT
ACCCGTAATGCTTTTGTTCTTTTGAATTTGCCGGAAAGCATCGTGAGCAC
TGATCACTAACCACTTCAAAAAGAATATGATGTCTGTACCCGGAATCAAA
CGCAATCAATGTCAagcgaatctgaaaattgcggtaatattcgattgaga
ttcaacTGCGTTTGACAATTGACTTTTAATTGGTCAattgcgtttgattt
ggtttgactggtgcAATCATCGATTCTgtttgattgagattgtctgggaA
TCTCACTCAACTCCAAATCATGGCATtttctttgaccatttttgatttgt
ttaattGTTTCGATTACTATTATTACAATTATTATTACAATCACTTTCAA
TCATATTAATTACCTTCGATTGTGTCGGATATGTTTCCTGTAGTAAAGCA
AAGGAATCTAAAACCGAGTTTATCTCGTCCAATAAAAACGCAGGATTTAC
GCGCGAAAACCACTTTCGCTCAGAATGCTTGTTATGGGTTATTTGAGGAA
ACCCAGGCGAGCACACTCAAAATCGCAGGGAAGTACTAAAGATGATTCTT
ATGGCTTCTTTTTGTggttcaatatttttggttttttcaaGGTATCTATT
TAATCAACTGGTTATCGAAGAAGTCAATGGTTATCGAGGAAGTTATTGAA
AGTAATTAATTACAAACAAAGTACTCAAACAGTTATCATGTCTTCGAAGA
CTAAATTAGTTcaactatgttctgtgaaaaaatcataaccatcagtgaaA
TACTCTTTCATCTATTTAATCTTACCATCTTgtttaggggtcactcacat
attgaTTCTTCCTACAACAAAAGTCAAATTGAGGCAAAGGGGTGGGGGGT
TAGAGTCGGTGACactaagaaatttcaccagacGTGTCGTTTATTCCCTG
ACAATGTTACTTTCCAGGCAATGTCAACCAAATTGAACAGTCATTGAACC
AAGAAAATCCGGTAAAGTTCTTGATGTTCAATGTGTTCAAATTACTGCAA
ACCTATAGTTGGAAAGGGTTGGATATTAATTATGTCTGTTATATTTACGC
ACAgagcgagcggagtgcgactcttttgacAAACacatgcgcgtaagcaa
aattgACAATAATATGCAGGCccaaaaaatgaaagtttttttttcacaat
ttttttcgtCTAGCTGCTATTCCACTATGTTTACCCTCTAGCatgtttca
aatttgaaaatttcgtgaaaattagcattttttagAAGAAGTagttgcag
tgtcaatcttttgcaaatttaaaaacccacttttccttggaaaaaattga
tgttttttgtcGAGAATGCAATGTTGGAGGAGGCTTTAGGAcgacttaaa
ataaaaattggttaacatttgggtaagcggtgtgagaaaatcaaaacaaa
acagctgAAAAGAACTGAAATTTCAGAATTAACAAaaggaaaatgcaaaa
aatatgtTCTGATGAGCTCTTACTATTCTCCCAAAAAGTTAGTGAAATTA
AATCTGaaatataaaagaaattattacaaaactactcAACACACGAGCCA
AATATATTCAGCTTTCGGCACTTTCGTTCGTGAAACCAAACAGTTCTTTT
TATCAATGAATGCatgcataaaaacttgaaattctttaatacttgtgaaa
aatattttccataatAAAACAAGGAAAATTCAATGTCTTTCATTAAACCA
GCAAACAAGGGATTTTTGTGTCTCTCCCAATTCTCCTTAAAActgtgtct
ttgacttttcagcatcaTTTCTTTGACAATCAACGCTTCTTACTTCGAAA
ATTTGACACGTTTACTACATGGCTCtgaatggggttctaggtccccccac
ttttcagtaaggttcaggtcccagtttAAATCTAAAGGTTCGGGTCCCTG
CAAAAAGTACTttcaaggttcaggtcccagaaaagaaaaatcattcggca
ccaaattatttcaatttcaatatgttatatattttttaatatttcttaaa
agaaatctaaagaaaaatgatatatatttttaaaaacatataagAAGGTT
CTGATTGAGAAAAAATATGCACCCTTTAGTTCTTAATTGCCCTCTGAAAT
GTGCTGAGAGGCCTAACTTTTTCAATAATAGAAGGTTATTGTGATCAAAT
CGCcatcaaatcaaaattaaaacattttaaagtgCTTCGCTCGCAACAAT
AGATGTCAACAaagcaaaacattcgaatcgctTCACAACaatggaatgtc
ttctttttgTGGTGTGTGTACCACCCCCTCTTGCATgcagataaaaataa
aacaatagaatatttaaaaacagaacgttaaaaccaaacaaaaaaatatt
tttacaatttcttaattATTGTAAATAGCCTCCAGAACTTAAGTGCAGCC
CTtcaggtccccccacttttttagcccccccccctgagtttaaaaaatga
gacagctcCCACCCACTTTTAGACCGATTTTAGATTTACACCCCCCCCCA
AATTAAATAAGGGGGGGGGCGGAGCCATATTTACAGCTTGACATTAGTTG
AGAGTCGAGAAGTTCATCAATTAGTTGGAACAACGAATCTAACGAAATTT
TGGAACAAAAACTAGCTAACTTAAAGATTCCGGGCCTCATctaaaaagac
ccactagatcaaaagttaaggggtggtacaggaaaagccctcCCCCCTAG
TTTTAAACCGCCCCTAAAaacctagtatgaatagggttaagtgaATACAA
CTGTTCCTTTGCTTAAAaattattctttaaaagtagaAATTGCAttgtat
atttataaaaacGCATTGTGAAAGCTAAATAATTTTGAGGCCTTGGTGGG
CTTATTTAGCTTTTCTTCTTTCTCCAAAAAGTCGAgctcatttgaaaatt
tgatcctTGTGTTAAAAGTTAAAAGTGTATTGTTTAGGATGtacatttca
gaaattactgttAAAAGAATTAgttgtcttttttttaaattggagAAAAA
CTCTAAAATTGGGTTAGTACAGAataaaatatttggaaacattatGCACA
TAGACCACCCCCTCACGGTGTGAACCCCCCTTTTTgaacctaccccggtg
gggtggaggtcctataaattaacccgtgttcgttcgttagttagttagtt
accagcttttctcgagattgactcattagttttttctgatttttggcgac
cataaaccctcgaatgtgacggagcccaattttcggggaaaaaattttgg
gcaaatttgggccaaaaaacagcttaaaaacaagttttttggactttgtg
aaaaattagatcattaattttttctgatttttaacatgaaagtagggtac
agtcatagttaaaagatggctcaaccagatttttgcaaaaatttttttgg
ctcaaaaattgcatttttatctataagaaccacttttaataagaatacat
caatgttcttagccatattattattattattattttattagtttttttta
aagatgaaaatgtcacggtggagcgcgatggtttgagttttctgtaaaca
cttattatttttttggctgaaaaatgaatctttatctataagaatcacta
tttatgagcatagatcaatgttattagaaaagaaaaatgtcacggtagag
cgcgacggtttgagttttctggaaaccttatttattaagctgtgcatttt
tctgatagtggttttCATAAAGAAAAGcacttaatagcttttttatttct
ttttcaaaaatatttttcaatagtgttgatagtttcttatgtgtttcatt
gtttcaatgttcactgattagtttgataaccaagtaggtccataaaagta
tcgcttgttaaTAGGGGATTAGAGTGCTTTATAGGGGGTAGGAGATTTTC
CAAATCAAatgggggatcaaataaaaatagtAAATTTGTGAACAAAGATT
TGCAAATATGGTTTTTTTTCAGGGTTTAAGTAGTGACCAATAGTTTTTAC
CCATAAAAATGGGGGGGGATCAGACGACTGCACACTATGGCccctttttt
tttcaggaaaaacttCTCTGCTCTCAGGATCATTTTCCTCAAATGTGCTA
ATTATTTCATAACTCTCTTATCAGCCAAAACTCCACCTAAGGATTTAAAA
TCTGgagttttttttctcaaacatcagttgtttgtttgttttttcagaaa
aatatatcaTTTCATATTTATTCTCTTTTCAGGGATTTGGTGGTGGAAGC
TCAGGTGGCTNgtttgtttgttttttcagaaaatatatcattTCATATTT
ATTCTCTTTTCAGGGATTTGGTGGTGGAAGCTCAGGTGGCTTTGGAGGTG
GAAGCTCAGGTGGTTTTGGCGGTGACTCAAATGATAATGATGACAGCGGT
GGTAGTTTCAGAGGTGGAAGAGGTAGAGGTAGAGGACGTGGCCGAGGAAG
AGGAAGGGGAAGAGGCGGATTTGGAGGATCTGATAACAATGACTCAAATG
GTGGTGGCTTCGGAGGAGGTTTTGGTGGAGAAAGTTCAGGTGGTGGCTTT
GGTTCAGGCGGTGGTGGCGGTGGTTTTGGAGACGATTCTGGTGGAGGTTT
CGGTGGGAGCTCTGGTGGTTTTGGAGGTGATGACTCAGGTGGCTTTGGTG
GAGATTCTGATGGAGATGGTGGCCGCGGGAGAGGTAGAGGACGTGGTCGT
GGAAGAGGCAGAGGACGCGGTCGTGGTGGATTTGGAGGTGGTGATGGAGA
TGCAGCTGGAGGTGGTGGTTTTGGTGGAGGAGATGACACTGGAGAGGTTG
ATGAAAATGGTGAACCCATTAGACCTCTTCATGAAGTTGATCCAGACAAA
CCAGCACCAGTTACATATGTACCCCCAGAACCATCAGAGGCTGAAGAAGA
GATTTTCCAAACAATTGCTCAAGGAATCAATTTCGATCAATATGATAATA
TTCCTGTTGAAATCACTGGCCCTGGAGAGATGCCAACTGCTGTCAGAAGT
TTTGAAGAGGCTGGTCTTGCACCTGGGGTCTTAGAGAACATCAAGAAAGC
TAAATATACTAAACCAACACCTGTCCAAAAATATGCCCTCCCGGCTGTGT
TAGCAAAACGTGATCTGATGGCTTGTGCCCAAACTGGATCAGGAAAAACA
GTAAGTGTGtttaaatgttttgataaaGGTTATAATTAAAAAAGTAATCA
TCTCTTTCTCGAATTCTTATTTAGGTTTCAACCAGGAagaataattttta
ttatttatatttCCTCAGTTGAATCaagagatttgtttttctttaggcTG
CTTTCCTCTTACCTGTGTTGACTGGCATACTTGAACATAGAGATGAGTTC
ACCAGTCAGTTAAGTGAGGTTCAAGCACCTATTGCTTTGGTAATTGCACC
AACTCGTGAACTTGCAACACAGATCTTTAATGAAGCACGAAAATTCTCTC
ATGGAACCAGCATTCGACCAGTTGTTGTTTATGGTGGTGTCAGTGTTGCA
CATCAGTTGCGCCAGGTTGAGGCTGGTTGTCACCTTTTGATTGGCACACC
TGGACGTTTGAAGGATTTTATGGGTCGTAGAAAAGTAAGATTTTTTACTA
CTCTCggatacctaatagccgggggtgctaatttaacgattaatcacact
cctctaaaccaatcagattcgaatAATTTTGCGCGGCTGACGATTACTTT
AAGAAACTGCATGCTTTTGCAAGCTTCTTTTTTATAGCGATTTAGATCTC
ACTTTTTATACTTATGACATTAACAATGTTTTCCATTTTCAATATATCaa
caaataaataatataaatacCAGTAAATactcatttttgaaaactttctt
gTATTTTAGATCACACTTGAAAACCTGAAGTATCTTGTTCTTGATGAAGC
AGACAGAATGCTTGACATGGGTTTCATGCCAGATGTAAAAACGATTGTCT
CAGATTTCAATATGCCTGAAAAAGAAGAACGGCACACCCTCATGTTTAGC
GCAACATTCCCCGAGCAGATTCAAAAGCTTGCTAGTGACTTTCTTAACCA
ATATGTTTTCATAACTATTGGTAAAATTGGTAGTACACATTCTGGTATTG
AGCAGAAAGTTGTAGAAATAGAGGATTCCGGGAAGCGTGATAGACTTGTT
GACATTCTTGGCAATGAAGGAACCAACAGGAATCTTGTTTTTGTGCAAAC
GAAACGATTGGCTGATTTCTTAGCAAGTTATTTATGTCAGAATGGATTCC
CAACAACAAGTATCCATGGGTTAGTATTTGTTAATCCTCTTCTCACTGCA
ATTTACTATCTTCATTCTTAACTTTCAAAGCAGAAATGTGAGACAGTTCC
TCATttgttttaaaatctttaaaatcgaTCAATATTTTCTGTAAGATTTC
GTCTTTTATGTACAGTCTACTCTCCctaattcaaattttctttaatttga
attaagacattgccccccccccctcagctTGAAAATGCATAAAATGTCCT
CTATAATTTGAATGTTTCTCTAAACGTTTAGTCCCTCTAAGGTCGAATTC
AAGAGAGGAAGCATCTAATACTTACCTTGAAATTCCAGGGATCGTTACCA
ACAACAACGTGAGGAAGCTTTGCGAGAATTCAAGAGAGGTGAGCAAACAG
TCCTTATTGCCACCCAAGTTGCCGCTCGTGGTTTGGACATTGCTGATGTT
AAACAAGTTATCAACTATGATCTTCCTGATGAAATAGAAGAATATATCCA
TCGAATCGGTCGTACCGGACGGATTGGTAACAAAGGAAAAGCCATTTCCT
TTTTTACACGTGGAAAAGATGATGGGTTAGCTCGTGCACTTGTCAAAACC
TTAGCTGACGTAAGTATTTGTTATTCTTTGTTAAGAGCTTATCTAATATT
TTTTGGCGTGAAAGAGATTTTGTCATTTAGACAAATGTGTTGTCACTACT
TGACTTATAAATTGACCAGTAGTTTTCTAGCCGCATTTGAATCATTTCAT
GTCAGGAATTTCCATTCAAttgacttgatttttttttgtaggCTGAGCAA
GAAGTTCCTGACTGGTTGGAAGAAGTTGCTGAGACTGCACTTGGTACAGG
CTATGGACCAAAAGGTGGTCGATTCGCTTCCAAAGACACTCGTGATGTAA
GTAGTAGTTTTAGTCAGAGGCACAGAAGTACGCTGTCACCTAGAATTCAA
GATTTGATCATTTTCCATAAAGCATAGCTAGAATAGTCTATCacatgtaa
aaataatttctgTTGCTAATGAAACGGTTTTAAGGGAGGGTTGAAAGAGA
AATTTTCCTTACGAGAAAACAATAACTTGAATATTTCTTTCTAAAGAAAG
TTGAAGGAACCAGCATTTAGAATCATATACCATCCTTTTTTCAGGGTGGC
GGTGGCGGACAATTCAACGCCATGGGTAACAATGATGGCTGGGGTGGCGG
TGAAACACCTGCAGCCGGTGGTGGTGGCGGTGGCGCTGCTGAAGAAGATG
ATTGGGATTAAGAAATGCAGGTTAAAAAGCGTCGCCATATGGATAAGGTT
GTTGTCACTCACGTTTGTTTATGCATTTTGCTTGGCAACAGAATTGGACT
TGGTTGGTTCAGTAACTTGACATCAAATTTGCATTCTATTTTTCTTCAAC
TTTATCCTTGCCGCTGAGAGCACCTTAAGGGGTGAGAATTTTAAACAGTG
GTGTACAAAAGGACgttgtttaaaaaatttgttcataTTCAAGAAACAGT
TGGTTTGTTGTTACTATAGAAActaaaaacgaaaacaaaaactTGATGAT
ACTATTCGTGTATTGGACTTTGATTCGATATATTAGAATCGGAAACTTTT
TTACGATTGCATAGGAACCTTGAACTCGAATATCTTTCATACTTTGgtaa
ttcttttgaaaaagagttCTATCAGAGAACCTTCCGTAAAGATAAAATAC
TACGAAAGACATTCGATTTCAGATCTGAtctgttttttatttcagaccTG
TTTTCTTATAGGTGTAAATAGTCAGGAACTTTTGtgatttattttcaaag
atttattttattcttatatAGTCTTTCTTATGCTTATTTAGTAGCCACCT
AggttttattttataattttgcaAACCCTTTTGATATTCTTCATAACGTC
CAGCCCTATCGATTATTTCTTGAATCATTTTACAACGATATCCGATAGTC
TTTGTCTATAGATTCGCTCTCAGTTGTTATCAGcgtcaatagaccttatc
ggagtttttgatttttctaaaaaagcgatgcattgtgggattgtttcgag
tgtattacaatagaaatctcttggAATtactcgagggaattctattgtca
tacactcgaaacaatcccacaatgcatcgcttttttagaaaaatcaaaaa
ctccgataaggtctattggtgtcaagtattcatgatatacaccattacga
tgtcttccacggacccaacagcagACCCAATATTGACTGGTTTTACATCG
catacaaccaatcagctattgggtcttctgacattgcaatggtgcatatc
atgcaTTTGAATTGTGTTTATTTTCCGGTAAGGATTTTCTTCTATCTATG
CAAGATTGTATAACGGtaatatttaaagaaattataCATTGCTTGCCCTA
GGTTATTAGTTCTTCATAAGAAATAACAATTAATTAAgcatttgaaaaat
catttttttaattccCCTTCCCCTTAAAACTTTTCCCTCCTGCCTAACTg
acctttttcaaaatccaTTCCTAATAAGTGAGATGTTAGAGAAAGTTTGG
ATCTTAAGGTTGGACAACTTTCTGACAGTAACagaaattatatattatat
atatctATCTATGATTATATCAGTTTCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033801XLOC_033801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053551-exon-scaffold_233-1491911889:463347..463567TCONS_00053551-exon-scaffold_233-1491911889:463347..463567Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1510915933:463347..463567TCONS_00053551-exon-scaffold_233-1510915933:463347..463567Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1575043694:463347..463567TCONS_00053551-exon-scaffold_233-1575043694:463347..463567Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1491911889:469329..469350TCONS_00053551-exon-scaffold_233-1491911889:469329..469350Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1510915933:469329..469350TCONS_00053551-exon-scaffold_233-1510915933:469329..469350Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1575043694:469329..469350TCONS_00053551-exon-scaffold_233-1575043694:469329..469350Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1491911889:469456..470246TCONS_00053551-exon-scaffold_233-1491911889:469456..470246Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1510915933:469456..470246TCONS_00053551-exon-scaffold_233-1510915933:469456..470246Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1575043694:469456..470246TCONS_00053551-exon-scaffold_233-1575043694:469456..470246Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1491911889:470393..470680TCONS_00053551-exon-scaffold_233-1491911889:470393..470680Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1510915933:470393..470680TCONS_00053551-exon-scaffold_233-1510915933:470393..470680Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1575043694:470393..470680TCONS_00053551-exon-scaffold_233-1575043694:470393..470680Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1491911889:470956..471365TCONS_00053551-exon-scaffold_233-1491911889:470956..471365Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1510915933:470956..471365TCONS_00053551-exon-scaffold_233-1510915933:470956..471365Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1575043694:470956..471365TCONS_00053551-exon-scaffold_233-1575043694:470956..471365Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1491911889:471685..471955TCONS_00053551-exon-scaffold_233-1491911889:471685..471955Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1510915933:471685..471955TCONS_00053551-exon-scaffold_233-1510915933:471685..471955Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1575043694:471685..471955TCONS_00053551-exon-scaffold_233-1575043694:471685..471955Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1491911889:472138..472242TCONS_00053551-exon-scaffold_233-1491911889:472138..472242Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1510915933:472138..472242TCONS_00053551-exon-scaffold_233-1510915933:472138..472242Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1575043694:472138..472242TCONS_00053551-exon-scaffold_233-1575043694:472138..472242Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1491911889:472491..473977TCONS_00053551-exon-scaffold_233-1491911889:472491..473977Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1510915933:472491..473977TCONS_00053551-exon-scaffold_233-1510915933:472491..473977Clytia hemisphaericaexon
TCONS_00053551-exon-scaffold_233-1575043694:472491..473977TCONS_00053551-exon-scaffold_233-1575043694:472491..473977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:463347..473977 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.22203	3.14327	2.12661	5.14396	0.79195	0.0121423	1.38555e-05	4.26528	6.36334e-08	8.12851e-06	5.0934e-05	2.74688e-05	6.62014e-07	0.000783065	0	0	2.30033e-05	3.40953e-09	0.310797	5.76443e-09	31.5734	21.706	31.6055	11.8205	2.69682	14.4164	10.515	11.9856	18.5582	21.8726
Blast
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BLAST of TCONS_00053551 vs. Swiss-Prot (Human)
Match: DDX4 (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=1 SV=2)

HSP 1 Score: 500.745 bits (1288), Expect = 7.662e-161
Identity = 253/457 (55.36%), Postives = 335/457 (73.30%), Query Frame = 3 
Query:  744 VTYVPPEPSEAEEEIFQTIAQGINFDQYDNIPVEITGPGEMPTAVRSFEEAGLAPGVLENIKKAKYTKPTPVQKYALPAVLAKRDLMACAQTGSGKTAAFLLPVLTGILEHRDEFTSQLSEVQAPIALVIAPTRELATQIFNEARKFSHGTSIRPVVVYGGVSVAHQLRQVEAGCHLLIGTPGRLKDFMGRRKITLENLKYLVLDEADRMLDMGFMPDVKTIVSDFNMPEKEERHTLMFSATFPEQIQKLASDFL-NQYVFITIGKIGSTHSGIEQKVVEIEDSGKRDRLVDILGNEGTNRNLVFVQTKRLADFLASYLCQNGFPTTSIHGDRYQQQREEALREFKRGEQTVLIATQVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFTRGKDDGLARALVKTLADAEQEVPDWLEEVAETALGTGY--GPKGGRFASKDTR 2105
            VTY+PP P E E+ IF     GINFD+YD I VE++G  + P A+ +FEEA L   +  NI KA YTK TPVQKY++P +LA RDLMACAQTGSGKTAAFLLP+L  ++ H     S+  E+Q P  +++APTREL  QI+ EARKFS GT +R VV+YGG  + H +RQ+  GC++L  TPGRL D +G+ KI L+ +KYLVLDEADRMLDMGF P++K ++S   MP KE+R TLMFSATFPE+IQ+LA++FL + Y+F+ +G++G     ++Q V+++    KR++LV+IL N G  R +VFV+TK+ ADF+A++LCQ    TTSIHGDR Q++RE+AL +F+ G+  VL+AT VAARGLDI +V+ VIN+DLP  I+EY+HRIGRTGR GN G+AISFF    D+ LA+ LVK L DA+Q+VP WLEE+A +    G+    +G  FAS DTR
Sbjct:  244 VTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH-DAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMM-HDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTR 698
The following BLAST results are available for this feature:
BLAST of TCONS_00053551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX47.662e-16155.36Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
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