TCONS_00053554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053554
Unique NameTCONS_00053554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053554 ID=TCONS_00053554|Name=TCONS_00053554|organism=Clytia hemisphaerica|type=transcript|length=3296bp
TCTAAACCCTTCTTCTCTTTTCTCCAACTCGGAGAAAGCACGTGTGGGAT
TTTcccaaattcaaaaaattgtaaagactttttaccacaaatttactttg
aaaagtaaaaaataagcttCTACTGCTAATAATACGACAACATGGCTGAC
GAATGGGATGAAGGAACATCCTCAGGAAACACGGGATTTGGTGGTGGAAG
CTCAGGTGGTTTTGGCGGTGACTCAAATGATAATGATGACAGCGGTGGTA
GTTTCAGAGGTGGAAGAGGTAGAGGACGTGGTCGTGGAAGAGGCAGAGGA
CGCGGTCGTGGTGGATTTGGAGGTGGTGATGGAGATGCAGCTGGAGGTGG
TGGTTTTGGTGGAGGAGATGACACTGGAGAGGTTGATGAAAATGGTGAAC
CCATTAGACCTCTTCATGAAGTTGATCCAGACAAACCAGCACCAGTTACA
TATGTACCCCCAGAACCATCAGAGGCTGAAGAAGAGATTTTCCAAACAAT
TGCTCAAGGAATCAATTTCGATCAATATGATAATATTCCTGTTGAAATCA
CTGGCCCTGGAGAGATGCCAACTGCTGTCAGAAGTTTTGAAGAGGCTGGT
CTTGCACCTGGGGTCTTAGAGAACATCAAGAAAGCTAAATATACTAAACC
AACACCTGTCCAAAAATATGCCCTCCCGGCTGTGTTAGCAAAACGTGATC
TGATGGCTTGTGCCCAAACTGGATCAGGAAAAACAgcTGCTTTCCTCTTA
CCTGTGTTGACTGGCATACTTGAACATAGAGATGAGTTCACCAGTCAGTT
AAGTGAGGTTCAAGCACCTATTGCTTTGGTAATTGCACCAACTCGTGAAC
TTGCAACACAGATCTTTAATGAAGCACGAAAATTCTCTCATGGAACCAGC
ATTCGACCAGTTGTTGTTTATGGTGGTGTCAGTGTTGCACATCAGTTGCG
CCAGGTTGAGGCTGGTTGTCACCTTTTGATTGGCACACCTGGACGTTTGA
AGGATTTTATGGGTCGTAGAAAAATCACACTTGAAAACCTGAAGTATCTT
GTTCTTGATGAAGCAGACAGAATGCTTGACATGGGTTTCATGCCAGATGT
AAAAACGATTGTCTCAGATTTCAATATGCCTGAAAAAGAAGAACGGCACA
CCCTCATGTTTAGCGCAACATTCCCCGAGCAGATTCAAAAGCTTGCTAGT
GACTTTCTTAACCAATATGTTTTCATAACTATTGGTAAAATTGGTAGTAC
ACATTCTGGTATTGAGCAGAAAGTTGTAGAAATAGAGGATTCCGGGAAGC
GTGATAGACTTGTTGACATTCTTGGCAATGAAGGAACCAACAGGAATCTT
GTTTTTGTGCAAACGAAACGATTGGCTGATTTCTTAGCAAGTTATTTATG
TCAGAATGGATTCCCAACAACAAGTATCCATGGGGATCGTTACCAACAAC
AACGTGAGGAAGCTTTGCGAGAATTCAAGAGAGGTGAGCAAACAGTCCTT
ATTGCCACCCAAGTTGCCGCTCGTGGTTTGGACATTGCTGATGTTAAACA
AGTTATCAACTATGATCTTCCTGATGAAATAGAAGAATATATCCATCGAA
TCGGTCGTACCGGACGGATTGGTAACAAAGGAAAAGCCATTTCCTTTTTT
ACACGTGGAAAAGATGATGGGTTAGCTCGTGCACTTGTCAAAACCTTAGC
TGACgCTGAGCAAGAAGTTCCTGACTGGTTGGAAGAAGTTGCTGAGACTG
CACTTGGTACAGGCTATGGACCAAAAGGTGGTCGATTCGCTTCCAAAGAC
ACTCGTGATGGTGGCGGTGGCGGACAATTCAACGCCATGGGTAACAATGA
TGGCTGGGGTGGCGGTGAAACACCTGCAGCCGGTGGTGGTGGCGGTGGCG
CTGCTGAAGAAGATGATTGGGATTAAGAAATGCAGGTTAAAAAGCGTCGC
CATATGGATAAGGTTGTTGTCACTCACGTTTGTTTATGCATTTTGCTTGG
CAACAGAATTGGACTTGGTTGGTTCAGTAACTTGACATCAAATTTGCATT
CTATTTTTCTTCAACTTTATCCTTGCCGCTGAGAGCACCTTAAGGGGTGA
GAATTTTAAACAGTGGTGTACAAAAGGACgttgtttaaaaaatttgttca
taTTCAAGAAACAGTTGGTTTGTTGTTACTATAGAAActaaaaacgaaaa
caaaaactTGATGATACTATTCGTGTATTGGACTTTGATTCGATATATTA
GAATCGGAAACTTTTTTACGATTGCATAGGAACCTTGAACTCGAATATCT
TTCATACTTTGgtaattcttttgaaaaagagttCTATCAGAGAACCTTCC
GTAAAGATAAAATACTACGAAAGACATTCGATTTCAGATCTGAtctgttt
tttatttcagaccTGTTTTCTTATAGGTGTAAATAGTCAGGAACTTTTGt
gatttattttcaaagatttattttattcttatatAGTCTTTCTTATGCTT
ATTTAGTAGCCACCTAggttttattttataattttgcaAACCCTTTTGAT
ATTCTTCATAACGTCCAGCCCTATCGATTATTTCTTGAATCATTTTACAA
CGATATCCGATAGTCTTTGTCTATAGATTCGCTCTCAGTTGTTATCAGcg
tcaatagaccttatcggagtttttgatttttctaaaaaagcgatgcattg
tgggattgtttcgagtgtattacaatagaaatctcttggAATtactcgag
ggaattctattgtcatacactcgaaacaatcccacaatgcatcgcttttt
tagaaaaatcaaaaactccgataaggtctattggtgtcaagtattcatga
tatacaccattacgatgtcttccacggacccaacagcagACCCAATATTG
ACTGGTTTTACATCGcatacaaccaatcagctattgggtcttctgacatt
gcaatggtgcatatcatgcaTTTGAATTGTGTTTATTTTCCGGTAAGGAT
TTTCTTCTATCTATGCAAGATTGTATAACGGtaatatttaaagaaattat
aCATTGCTTGCCCTAGGTTATTAGTTCTTCATAAGAAATAACAATTAATT
AAgcatttgaaaaatcatttttttaattccCCTTCCCCTTAAAACTTTTC
CCTCCTGCCTAACTgacctttttcaaaatccaTTCCTAATAAGTGAGATG
TTAGAGAAAGTTTGGATCTTAAGGTTGGACAACTTTCTGACAGTAACaga
aattatatattatatatatctATCTATGATTATATCAGTTTCTGGG
Run BLAST on NCBI

transcript from alignment at scaffold_233:463385..473977+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053554 ID=TCONS_00053554|Name=TCONS_00053554|organism=Clytia hemisphaerica|type=transcript|length=10593bp|location=Sequence derived from alignment at scaffold_233:463385..473977+ (Clytia hemisphaerica)
TCTAAACCCTTCTTCTCTTTTCTCCAACTCGGAGAAAGCACGTGTGGGAT
TTTcccaaattcaaaaaattgtaaagactttttaccacaaatttactttg
aaaagtaaaaaataagcttCTACTGCTAATAATACGACAACATGGCTGAC
GAATGGGATGAAGGAACATCCTCAGGAAACACGGTAAGCTCCATAATTTA
TTGCATTGTAGGAAGCTTTTTGTCGATCGAATAAACATGTTTTTATTGTC
AGGTATATAGTTAACAAATTACTTTATGAAACGAAATAACAAGGATCAAA
GAGTCTTTCTTTGGGGCTCTAGTTATTATCTAATAGGGTTGGTGTATTAC
CAGGTATTACACCTTTCCAGTAATCCAGACAGAGTCAATTGAACAAGTTC
AAATGAAAATCGCGATCGAACCAATAGAATGTAATGTGTTTGATTGTATT
TGCACAACCATTTCCGTTTGGTTTGGAAACGTGAACTTCTGATGTTTAAA
TatttcaatacacctttcccgtaattcaaacttctcagaaataGCCCGGG
AAAATGTGAGCTCCACTGTCAGTCAGgaacaagtgcaaattaggatacct
gTTGGCAATCTCTTCTACTCAGGAGAGTTGTATCCTAATTTTGAGATTTA
GGTACATCCTTACTGCTTTGATCCGCGATTGGattttttcatcaagattt
gcaccactgaccaaaatttcaagtaatttgCTTTTGCGTATGCTAGTTAG
CACATTTTGAGCTAGCTAGTGGTTTTGGGCTATAGTTTTGCATTCCGCCA
AACTCAATGAAATTCAGTACACAATCTCATTTGCTTATTATTTACATCTT
GGAAGTGGTAAGATGGGGCGGATGTCTCTGGTTGGTGAAAAATAcaggtt
ttttggtttttagtatcCTAATTAGGATGACGTTTAGGATGTTGATTGCT
ACTTTGGATACTTTTTTGTATCCAATTTAAGATACTCTCCTATGTAGGAG
AGGCCGAAGGTATTctaatttgcacttgttcttgactgactggagtgtat
aaaattgtttggggaGATAAAcgaacgcgtttttgcctgcgaggggttaa
ggatggaaaattttcattctaggtatggggaactcaccaaaatcaattca
aaattgaaaaacatctggttttatgagatgaTGTTGTGATTAATTGGATG
TATAGCATATGCttagtttttctttcatttatatCAACCAGAATTATTAC
GGTTTAAAAACAACCATTCTTTCCAtttattcttgaattagaactacctt
agggaaaacaataagtgttaaattcatcaaattacagctttttatgCTTG
AAGGGGGGACAGAAATTTTTGGAGGCAGGGTGGGGAAAAATGAgggggga
tggaaaatttttattctaggcatggggggaaGAGACTCTGAAGGACACTA
TGAATCAATAATGATCGGTAATAATTGAAGGTGATCAGTGACCacttatc
gattctatcggtgatcgaatactcagacgatctcaatcaaacggaattga
ctgattgaaattcgattgtcgaatgcaatcaaatctcaatcgaacgtcaa
aattctgggtaatatttgattgttgttcgactggttcgattgtcgattcc
gttcgattgagatcgtctggtatCAGCTTAGTGATCTGGTGATGGTGGCT
CAAAATTTGATTACCCGTAATGCTTTTGTTCTTTTGAATTTGCCGGAAAG
CATCGTGAGCACTGATCACTAACCACTTCAAAAAGAATATGATGTCTGTA
CCCGGAATCAAACGCAATCAATGTCAagcgaatctgaaaattgcggtaat
attcgattgagattcaacTGCGTTTGACAATTGACTTTTAATTGGTCAat
tgcgtttgatttggtttgactggtgcAATCATCGATTCTgtttgattgag
attgtctgggaATCTCACTCAACTCCAAATCATGGCATtttctttgacca
tttttgatttgtttaattGTTTCGATTACTATTATTACAATTATTATTAC
AATCACTTTCAATCATATTAATTACCTTCGATTGTGTCGGATATGTTTCC
TGTAGTAAAGCAAAGGAATCTAAAACCGAGTTTATCTCGTCCAATAAAAA
CGCAGGATTTACGCGCGAAAACCACTTTCGCTCAGAATGCTTGTTATGGG
TTATTTGAGGAAACCCAGGCGAGCACACTCAAAATCGCAGGGAAGTACTA
AAGATGATTCTTATGGCTTCTTTTTGTggttcaatatttttggttttttc
aaGGTATCTATTTAATCAACTGGTTATCGAAGAAGTCAATGGTTATCGAG
GAAGTTATTGAAAGTAATTAATTACAAACAAAGTACTCAAACAGTTATCA
TGTCTTCGAAGACTAAATTAGTTcaactatgttctgtgaaaaaatcataa
ccatcagtgaaATACTCTTTCATCTATTTAATCTTACCATCTTgtttagg
ggtcactcacatattgaTTCTTCCTACAACAAAAGTCAAATTGAGGCAAA
GGGGTGGGGGGTTAGAGTCGGTGACactaagaaatttcaccagacGTGTC
GTTTATTCCCTGACAATGTTACTTTCCAGGCAATGTCAACCAAATTGAAC
AGTCATTGAACCAAGAAAATCCGGTAAAGTTCTTGATGTTCAATGTGTTC
AAATTACTGCAAACCTATAGTTGGAAAGGGTTGGATATTAATTATGTCTG
TTATATTTACGCACAgagcgagcggagtgcgactcttttgacAAACacat
gcgcgtaagcaaaattgACAATAATATGCAGGCccaaaaaatgaaagttt
ttttttcacaatttttttcgtCTAGCTGCTATTCCACTATGTTTACCCTC
TAGCatgtttcaaatttgaaaatttcgtgaaaattagcattttttagAAG
AAGTagttgcagtgtcaatcttttgcaaatttaaaaacccacttttcctt
ggaaaaaattgatgttttttgtcGAGAATGCAATGTTGGAGGAGGCTTTA
GGAcgacttaaaataaaaattggttaacatttgggtaagcggtgtgagaa
aatcaaaacaaaacagctgAAAAGAACTGAAATTTCAGAATTAACAAaag
gaaaatgcaaaaaatatgtTCTGATGAGCTCTTACTATTCTCCCAAAAAG
TTAGTGAAATTAAATCTGaaatataaaagaaattattacaaaactactcA
ACACACGAGCCAAATATATTCAGCTTTCGGCACTTTCGTTCGTGAAACCA
AACAGTTCTTTTTATCAATGAATGCatgcataaaaacttgaaattcttta
atacttgtgaaaaatattttccataatAAAACAAGGAAAATTCAATGTCT
TTCATTAAACCAGCAAACAAGGGATTTTTGTGTCTCTCCCAATTCTCCTT
AAAActgtgtctttgacttttcagcatcaTTTCTTTGACAATCAACGCTT
CTTACTTCGAAAATTTGACACGTTTACTACATGGCTCtgaatggggttct
aggtccccccacttttcagtaaggttcaggtcccagtttAAATCTAAAGG
TTCGGGTCCCTGCAAAAAGTACTttcaaggttcaggtcccagaaaagaaa
aatcattcggcaccaaattatttcaatttcaatatgttatatatttttta
atatttcttaaaagaaatctaaagaaaaatgatatatatttttaaaaaca
tataagAAGGTTCTGATTGAGAAAAAATATGCACCCTTTAGTTCTTAATT
GCCCTCTGAAATGTGCTGAGAGGCCTAACTTTTTCAATAATAGAAGGTTA
TTGTGATCAAATCGCcatcaaatcaaaattaaaacattttaaagtgCTTC
GCTCGCAACAATAGATGTCAACAaagcaaaacattcgaatcgctTCACAA
CaatggaatgtcttctttttgTGGTGTGTGTACCACCCCCTCTTGCATgc
agataaaaataaaacaatagaatatttaaaaacagaacgttaaaaccaaa
caaaaaaatatttttacaatttcttaattATTGTAAATAGCCTCCAGAAC
TTAAGTGCAGCCCTtcaggtccccccacttttttagcccccccccctgag
tttaaaaaatgagacagctcCCACCCACTTTTAGACCGATTTTAGATTTA
CACCCCCCCCCAAATTAAATAAGGGGGGGGGCGGAGCCATATTTACAGCT
TGACATTAGTTGAGAGTCGAGAAGTTCATCAATTAGTTGGAACAACGAAT
CTAACGAAATTTTGGAACAAAAACTAGCTAACTTAAAGATTCCGGGCCTC
ATctaaaaagacccactagatcaaaagttaaggggtggtacaggaaaagc
cctcCCCCCTAGTTTTAAACCGCCCCTAAAaacctagtatgaatagggtt
aagtgaATACAACTGTTCCTTTGCTTAAAaattattctttaaaagtagaA
ATTGCAttgtatatttataaaaacGCATTGTGAAAGCTAAATAATTTTGA
GGCCTTGGTGGGCTTATTTAGCTTTTCTTCTTTCTCCAAAAAGTCGAgct
catttgaaaatttgatcctTGTGTTAAAAGTTAAAAGTGTATTGTTTAGG
ATGtacatttcagaaattactgttAAAAGAATTAgttgtcttttttttaa
attggagAAAAACTCTAAAATTGGGTTAGTACAGAataaaatatttggaa
acattatGCACATAGACCACCCCCTCACGGTGTGAACCCCCCTTTTTgaa
cctaccccggtggggtggaggtcctataaattaacccgtgttcgttcgtt
agttagttagttaccagcttttctcgagattgactcattagttttttctg
atttttggcgaccataaaccctcgaatgtgacggagcccaattttcgggg
aaaaaattttgggcaaatttgggccaaaaaacagcttaaaaacaagtttt
ttggactttgtgaaaaattagatcattaattttttctgatttttaacatg
aaagtagggtacagtcatagttaaaagatggctcaaccagatttttgcaa
aaatttttttggctcaaaaattgcatttttatctataagaaccactttta
ataagaatacatcaatgttcttagccatattattattattattattttat
tagttttttttaaagatgaaaatgtcacggtggagcgcgatggtttgagt
tttctgtaaacacttattatttttttggctgaaaaatgaatctttatcta
taagaatcactatttatgagcatagatcaatgttattagaaaagaaaaat
gtcacggtagagcgcgacggtttgagttttctggaaaccttatttattaa
gctgtgcatttttctgatagtggttttCATAAAGAAAAGcacttaatagc
ttttttatttctttttcaaaaatatttttcaatagtgttgatagtttctt
atgtgtttcattgtttcaatgttcactgattagtttgataaccaagtagg
tccataaaagtatcgcttgttaaTAGGGGATTAGAGTGCTTTATAGGGGG
TAGGAGATTTTCCAAATCAAatgggggatcaaataaaaatagtAAATTTG
TGAACAAAGATTTGCAAATATGGTTTTTTTTCAGGGTTTAAGTAGTGACC
AATAGTTTTTACCCATAAAAATGGGGGGGGATCAGACGACTGCACACTAT
GGCccctttttttttcaggaaaaacttCTCTGCTCTCAGGATCATTTTCC
TCAAATGTGCTAATTATTTCATAACTCTCTTATCAGCCAAAACTCCACCT
AAGGATTTAAAATCTGgagttttttttctcaaacatcagttgtttgtttg
ttttttcagaaaaatatatcaTTTCATATTTATTCTCTTTTCAGGGATTT
GGTGGTGGAAGCTCAGGTGGCTNgtttgtttgttttttcagaaaatatat
cattTCATATTTATTCTCTTTTCAGGGATTTGGTGGTGGAAGCTCAGGTG
GCTTTGGAGGTGGAAGCTCAGGTGGTTTTGGCGGTGACTCAAATGATAAT
GATGACAGCGGTGGTAGTTTCAGAGGTGGAAGAGGTAGAGGTAGAGGACG
TGGCCGAGGAAGAGGAAGGGGAAGAGGCGGATTTGGAGGATCTGATAACA
ATGACTCAAATGGTGGTGGCTTCGGAGGAGGTTTTGGTGGAGAAAGTTCA
GGTGGTGGCTTTGGTTCAGGCGGTGGTGGCGGTGGTTTTGGAGACGATTC
TGGTGGAGGTTTCGGTGGGAGCTCTGGTGGTTTTGGAGGTGATGACTCAG
GTGGCTTTGGTGGAGATTCTGATGGAGATGGTGGCCGCGGGAGAGGTAGA
GGACGTGGTCGTGGAAGAGGCAGAGGACGCGGTCGTGGTGGATTTGGAGG
TGGTGATGGAGATGCAGCTGGAGGTGGTGGTTTTGGTGGAGGAGATGACA
CTGGAGAGGTTGATGAAAATGGTGAACCCATTAGACCTCTTCATGAAGTT
GATCCAGACAAACCAGCACCAGTTACATATGTACCCCCAGAACCATCAGA
GGCTGAAGAAGAGATTTTCCAAACAATTGCTCAAGGAATCAATTTCGATC
AATATGATAATATTCCTGTTGAAATCACTGGCCCTGGAGAGATGCCAACT
GCTGTCAGAAGTTTTGAAGAGGCTGGTCTTGCACCTGGGGTCTTAGAGAA
CATCAAGAAAGCTAAATATACTAAACCAACACCTGTCCAAAAATATGCCC
TCCCGGCTGTGTTAGCAAAACGTGATCTGATGGCTTGTGCCCAAACTGGA
TCAGGAAAAACAGTAAGTGTGtttaaatgttttgataaaGGTTATAATTA
AAAAAGTAATCATCTCTTTCTCGAATTCTTATTTAGGTTTCAACCAGGAa
gaataatttttattatttatatttCCTCAGTTGAATCaagagatttgttt
ttctttaggcTGCTTTCCTCTTACCTGTGTTGACTGGCATACTTGAACAT
AGAGATGAGTTCACCAGTCAGTTAAGTGAGGTTCAAGCACCTATTGCTTT
GGTAATTGCACCAACTCGTGAACTTGCAACACAGATCTTTAATGAAGCAC
GAAAATTCTCTCATGGAACCAGCATTCGACCAGTTGTTGTTTATGGTGGT
GTCAGTGTTGCACATCAGTTGCGCCAGGTTGAGGCTGGTTGTCACCTTTT
GATTGGCACACCTGGACGTTTGAAGGATTTTATGGGTCGTAGAAAAGTAA
GATTTTTTACTACTCTCggatacctaatagccgggggtgctaatttaacg
attaatcacactcctctaaaccaatcagattcgaatAATTTTGCGCGGCT
GACGATTACTTTAAGAAACTGCATGCTTTTGCAAGCTTCTTTTTTATAGC
GATTTAGATCTCACTTTTTATACTTATGACATTAACAATGTTTTCCATTT
TCAATATATCaacaaataaataatataaatacCAGTAAATactcattttt
gaaaactttcttgTATTTTAGATCACACTTGAAAACCTGAAGTATCTTGT
TCTTGATGAAGCAGACAGAATGCTTGACATGGGTTTCATGCCAGATGTAA
AAACGATTGTCTCAGATTTCAATATGCCTGAAAAAGAAGAACGGCACACC
CTCATGTTTAGCGCAACATTCCCCGAGCAGATTCAAAAGCTTGCTAGTGA
CTTTCTTAACCAATATGTTTTCATAACTATTGGTAAAATTGGTAGTACAC
ATTCTGGTATTGAGCAGAAAGTTGTAGAAATAGAGGATTCCGGGAAGCGT
GATAGACTTGTTGACATTCTTGGCAATGAAGGAACCAACAGGAATCTTGT
TTTTGTGCAAACGAAACGATTGGCTGATTTCTTAGCAAGTTATTTATGTC
AGAATGGATTCCCAACAACAAGTATCCATGGGTTAGTATTTGTTAATCCT
CTTCTCACTGCAATTTACTATCTTCATTCTTAACTTTCAAAGCAGAAATG
TGAGACAGTTCCTCATttgttttaaaatctttaaaatcgaTCAATATTTT
CTGTAAGATTTCGTCTTTTATGTACAGTCTACTCTCCctaattcaaattt
tctttaatttgaattaagacattgccccccccccctcagctTGAAAATGC
ATAAAATGTCCTCTATAATTTGAATGTTTCTCTAAACGTTTAGTCCCTCT
AAGGTCGAATTCAAGAGAGGAAGCATCTAATACTTACCTTGAAATTCCAG
GGATCGTTACCAACAACAACGTGAGGAAGCTTTGCGAGAATTCAAGAGAG
GTGAGCAAACAGTCCTTATTGCCACCCAAGTTGCCGCTCGTGGTTTGGAC
ATTGCTGATGTTAAACAAGTTATCAACTATGATCTTCCTGATGAAATAGA
AGAATATATCCATCGAATCGGTCGTACCGGACGGATTGGTAACAAAGGAA
AAGCCATTTCCTTTTTTACACGTGGAAAAGATGATGGGTTAGCTCGTGCA
CTTGTCAAAACCTTAGCTGACGTAAGTATTTGTTATTCTTTGTTAAGAGC
TTATCTAATATTTTTTGGCGTGAAAGAGATTTTGTCATTTAGACAAATGT
GTTGTCACTACTTGACTTATAAATTGACCAGTAGTTTTCTAGCCGCATTT
GAATCATTTCATGTCAGGAATTTCCATTCAAttgacttgatttttttttg
taggCTGAGCAAGAAGTTCCTGACTGGTTGGAAGAAGTTGCTGAGACTGC
ACTTGGTACAGGCTATGGACCAAAAGGTGGTCGATTCGCTTCCAAAGACA
CTCGTGATGTAAGTAGTAGTTTTAGTCAGAGGCACAGAAGTACGCTGTCA
CCTAGAATTCAAGATTTGATCATTTTCCATAAAGCATAGCTAGAATAGTC
TATCacatgtaaaaataatttctgTTGCTAATGAAACGGTTTTAAGGGAG
GGTTGAAAGAGAAATTTTCCTTACGAGAAAACAATAACTTGAATATTTCT
TTCTAAAGAAAGTTGAAGGAACCAGCATTTAGAATCATATACCATCCTTT
TTTCAGGGTGGCGGTGGCGGACAATTCAACGCCATGGGTAACAATGATGG
CTGGGGTGGCGGTGAAACACCTGCAGCCGGTGGTGGTGGCGGTGGCGCTG
CTGAAGAAGATGATTGGGATTAAGAAATGCAGGTTAAAAAGCGTCGCCAT
ATGGATAAGGTTGTTGTCACTCACGTTTGTTTATGCATTTTGCTTGGCAA
CAGAATTGGACTTGGTTGGTTCAGTAACTTGACATCAAATTTGCATTCTA
TTTTTCTTCAACTTTATCCTTGCCGCTGAGAGCACCTTAAGGGGTGAGAA
TTTTAAACAGTGGTGTACAAAAGGACgttgtttaaaaaatttgttcataT
TCAAGAAACAGTTGGTTTGTTGTTACTATAGAAActaaaaacgaaaacaa
aaactTGATGATACTATTCGTGTATTGGACTTTGATTCGATATATTAGAA
TCGGAAACTTTTTTACGATTGCATAGGAACCTTGAACTCGAATATCTTTC
ATACTTTGgtaattcttttgaaaaagagttCTATCAGAGAACCTTCCGTA
AAGATAAAATACTACGAAAGACATTCGATTTCAGATCTGAtctgtttttt
atttcagaccTGTTTTCTTATAGGTGTAAATAGTCAGGAACTTTTGtgat
ttattttcaaagatttattttattcttatatAGTCTTTCTTATGCTTATT
TAGTAGCCACCTAggttttattttataattttgcaAACCCTTTTGATATT
CTTCATAACGTCCAGCCCTATCGATTATTTCTTGAATCATTTTACAACGA
TATCCGATAGTCTTTGTCTATAGATTCGCTCTCAGTTGTTATCAGcgtca
atagaccttatcggagtttttgatttttctaaaaaagcgatgcattgtgg
gattgtttcgagtgtattacaatagaaatctcttggAATtactcgaggga
attctattgtcatacactcgaaacaatcccacaatgcatcgcttttttag
aaaaatcaaaaactccgataaggtctattggtgtcaagtattcatgatat
acaccattacgatgtcttccacggacccaacagcagACCCAATATTGACT
GGTTTTACATCGcatacaaccaatcagctattgggtcttctgacattgca
atggtgcatatcatgcaTTTGAATTGTGTTTATTTTCCGGTAAGGATTTT
CTTCTATCTATGCAAGATTGTATAACGGtaatatttaaagaaattataCA
TTGCTTGCCCTAGGTTATTAGTTCTTCATAAGAAATAACAATTAATTAAg
catttgaaaaatcatttttttaattccCCTTCCCCTTAAAACTTTTCCCT
CCTGCCTAACTgacctttttcaaaatccaTTCCTAATAAGTGAGATGTTA
GAGAAAGTTTGGATCTTAAGGTTGGACAACTTTCTGACAGTAACagaaat
tatatattatatatatctATCTATGATTATATCAGTTTCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033801XLOC_033801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053554-exon-scaffold_233-1491911889:463385..463567TCONS_00053554-exon-scaffold_233-1491911889:463385..463567Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1510915933:463385..463567TCONS_00053554-exon-scaffold_233-1510915933:463385..463567Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1575043694:463385..463567TCONS_00053554-exon-scaffold_233-1575043694:463385..463567Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1491911889:469329..469350TCONS_00053554-exon-scaffold_233-1491911889:469329..469350Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1510915933:469329..469350TCONS_00053554-exon-scaffold_233-1510915933:469329..469350Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1575043694:469329..469350TCONS_00053554-exon-scaffold_233-1575043694:469329..469350Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1491911889:469456..469518TCONS_00053554-exon-scaffold_233-1491911889:469456..469518Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1510915933:469456..469518TCONS_00053554-exon-scaffold_233-1510915933:469456..469518Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1575043694:469456..469518TCONS_00053554-exon-scaffold_233-1575043694:469456..469518Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1491911889:469780..470246TCONS_00053554-exon-scaffold_233-1491911889:469780..470246Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1510915933:469780..470246TCONS_00053554-exon-scaffold_233-1510915933:469780..470246Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1575043694:469780..470246TCONS_00053554-exon-scaffold_233-1575043694:469780..470246Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1491911889:470393..470680TCONS_00053554-exon-scaffold_233-1491911889:470393..470680Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1510915933:470393..470680TCONS_00053554-exon-scaffold_233-1510915933:470393..470680Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1575043694:470393..470680TCONS_00053554-exon-scaffold_233-1575043694:470393..470680Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1491911889:470956..471365TCONS_00053554-exon-scaffold_233-1491911889:470956..471365Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1510915933:470956..471365TCONS_00053554-exon-scaffold_233-1510915933:470956..471365Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1575043694:470956..471365TCONS_00053554-exon-scaffold_233-1575043694:470956..471365Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1491911889:471685..471955TCONS_00053554-exon-scaffold_233-1491911889:471685..471955Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1510915933:471685..471955TCONS_00053554-exon-scaffold_233-1510915933:471685..471955Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1575043694:471685..471955TCONS_00053554-exon-scaffold_233-1575043694:471685..471955Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1491911889:472138..472242TCONS_00053554-exon-scaffold_233-1491911889:472138..472242Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1510915933:472138..472242TCONS_00053554-exon-scaffold_233-1510915933:472138..472242Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1575043694:472138..472242TCONS_00053554-exon-scaffold_233-1575043694:472138..472242Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1491911889:472491..473977TCONS_00053554-exon-scaffold_233-1491911889:472491..473977Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1510915933:472491..473977TCONS_00053554-exon-scaffold_233-1510915933:472491..473977Clytia hemisphaericaexon
TCONS_00053554-exon-scaffold_233-1575043694:472491..473977TCONS_00053554-exon-scaffold_233-1575043694:472491..473977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:463385..473977 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0221959	0.00442293	0.000495596	0.000814024	15.3433	10.2444	10.7018	7.92584	11.315	8.4106	15.1962	8.81424	14.553	8.87543	2.40078e-05	2.40416e-07	1.86046	0.000225482	5.23647e-05	3.49916e-05	5.09379e-05	0.000607037	5.80319e-05	0.000117924	32.096	37.3531	3.73493e-06	2.8705e-05	0.00112292	0.000800862
Blast
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BLAST of TCONS_00053554 vs. Swiss-Prot (Human)
Match: DDX4 (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=1 SV=2)

HSP 1 Score: 500.745 bits (1288), Expect = 7.420e-162
Identity = 253/457 (55.36%), Postives = 335/457 (73.30%), Query Frame = 1 
Query:  445 VTYVPPEPSEAEEEIFQTIAQGINFDQYDNIPVEITGPGEMPTAVRSFEEAGLAPGVLENIKKAKYTKPTPVQKYALPAVLAKRDLMACAQTGSGKTAAFLLPVLTGILEHRDEFTSQLSEVQAPIALVIAPTRELATQIFNEARKFSHGTSIRPVVVYGGVSVAHQLRQVEAGCHLLIGTPGRLKDFMGRRKITLENLKYLVLDEADRMLDMGFMPDVKTIVSDFNMPEKEERHTLMFSATFPEQIQKLASDFL-NQYVFITIGKIGSTHSGIEQKVVEIEDSGKRDRLVDILGNEGTNRNLVFVQTKRLADFLASYLCQNGFPTTSIHGDRYQQQREEALREFKRGEQTVLIATQVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFTRGKDDGLARALVKTLADAEQEVPDWLEEVAETALGTGY--GPKGGRFASKDTR 1806
            VTY+PP P E E+ IF     GINFD+YD I VE++G  + P A+ +FEEA L   +  NI KA YTK TPVQKY++P +LA RDLMACAQTGSGKTAAFLLP+L  ++ H     S+  E+Q P  +++APTREL  QI+ EARKFS GT +R VV+YGG  + H +RQ+  GC++L  TPGRL D +G+ KI L+ +KYLVLDEADRMLDMGF P++K ++S   MP KE+R TLMFSATFPE+IQ+LA++FL + Y+F+ +G++G     ++Q V+++    KR++LV+IL N G  R +VFV+TK+ ADF+A++LCQ    TTSIHGDR Q++RE+AL +F+ G+  VL+AT VAARGLDI +V+ VIN+DLP  I+EY+HRIGRTGR GN G+AISFF    D+ LA+ LVK L DA+Q+VP WLEE+A +    G+    +G  FAS DTR
Sbjct:  244 VTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH-DAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMM-HDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTR 698
The following BLAST results are available for this feature:
BLAST of TCONS_00053554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX47.420e-16255.36Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
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