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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053560 ID=TCONS_00053560|Name=TCONS_00053560|organism=Clytia hemisphaerica|type=transcript|length=649bp
ACAAGTTGTATTTATCGGATTTTCTGTTATCCCTAGTTCAGTTCCTTTGT
AGTCAGGATTACGTAATATGTTTCTTACGTCATCGAATTGTTCCATATGC
CTGCCAAGATGGTACCACAAGTTTCGGCGCTGGGTTGAAAGCCAAGTGAA
GTTTGGAGCATACATAACCATTGACAATAGGATGATTGcatattgttttt
tgttttgaagctTTGATAAAGCATCTGTTGTTTTATCGTCCATTGAGTGA
CCAGTGATATACAAAACGACATTATGCGTTCCCTTAGTGTTTCTTCTCAG
CTCTTCCTTAAAGAATGTGTGAGAGCCAATAGGGTAGACAGGAGCCTTAA
TAGGATCCTTCACCTCAGGACGTTGTTGGATGAATTGGTTAGGTTCGTCC
AGATTAATCGTGATGAGGTCATTGTAATATTGATTGAGAACCTTTGGAAC
CAAATCTTTAGAATCTCGGATGTTCATTACTTTCTGTTCCAGCTGATCAT
AAAAACAGATTTCATAACATTCATCAGTGTGGAATTCTCTCAATAACATG
TCAAAGAATTTAAGCCACTCATTTCTAGGATGAACTTCGACAGGATTAAC
ATTGTCAGCGCGGACCAACACTTTATACATTACGAGTGGCTGCCATATA Run BLAST on NCBI transcript from alignment at scaffold_233:517159..523834+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053560 ID=TCONS_00053560|Name=TCONS_00053560|organism=Clytia hemisphaerica|type=transcript|length=6676bp|location=Sequence derived from alignment at scaffold_233:517159..523834+ (Clytia hemisphaerica)
ACAAGTTGTATTTATCGGATTTTCTGTTATCCCTAGTTCAGTTCCTTTGT
AGTCAGGATTACGTAATATGTTTCTTACGTCATCGAATTGTTCCATATGC
CTGCCAAGATGGTACCACAAGTTTCGGCGCTGGGTTGAAAGCCAAGTGAA
GTTTGGAGCATACATGACCATTGACAATAGGATGATTGcatattgttttt
tgttttgaagctTTGATAAAGCATCTGTTGTTTTATCGTCGATTGAGTAG
CCAGCGATATACAAAACAACATTACGCATTCCCTTAGTATTTCTTCTCAG
CTCTTCCTCAAAGAATTTGTGAGAGCCAATAGGGTAGACAGGGTCCTTAA
TAGGATCCTTCACCTGAGGACGTTGCTGGATGAATTGGTTAGGTTCGTCT
AGATTAATCGTGATGAGGTCATTGTAATATTGATCAAGAACCTTTGGAAC
CAAATCTTTAGAATCTCGGACGTTCATTACTTTCTGTTCCAGCTGATCat
aaaaacatatttcataACATTCATCAGTGTGGAATTCTCTCAATAACATG
TCAAAGAATTTAAGCCACTCATTTCTAGGATAAACTTCGACAGGATTAAC
ATTGTCAGCACGGACCAACACTTTATACATTACGAGTGGCTGCCAAACAA
CAATGATGCGAGTCTTGTCTAcacaaaatgaaaagttttctgCAAGTGAA
AAAGTGACATTTCTAATGATCAATAAAAGCACTGGTACTATTGCCAATGA
AACTTTCATCTCGAACCGATTTTTCTATATGAACTAGACTCTTCAGTGAG
AAAATTCTATGATCAAGAGAAATGAATAAGGTTAatcttttaattgtttt
cataAATGTGCTTATatcattaaaatctaaataAGCGATAATTGACGAAA
GCTGATGATGGAGGTGTTCAGTCTAATTGTTATTGCTATCGTAAAATCTC
ACTAGGTTACACTAATTCAATTAGCTGTCAACGTCGCCtcacaaaaatgc
gggagagcaagtcgataaaaatttttccccgattATCCGATTATTCTAAA
TCGGAAAATGAGGAAatcggaaaaatattttcagtgaaATTCAATTTTAT
CCAAAATGTTATCGGGAAATTGGGGAAGTTGGGGGATTTTTCGTCCCAAT
TATagaaaattaggaaattttgcCAATCTGTCTTTCCAAAACCTGAATTT
GTTTTTCAGGAtatcggaaaatttttggaaatgcgggagatgcgggagaa
aatcctgaaaatgcagGAGAGTTGATAGCTATGTAATCGGTGTAATTTGA
GTCACAATCACCCTCTtttagaccccccccccccccNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNgatttgtaagtgctctaaagtaggttggaatggt
agagttttaactctgaattttaacatgagacttaagactgaggatccaaa
agttcaaaaatagtccaataagactcagattatagcctggaagtctgcca
acccctcccaaattaaaatattcgattaaattaaagagatagcccaaaat
cgactttctcgccagtaCATTAAATCTTGGCTTTCAACCCAGCGCCAAAA
CTTACGGTACCATCTTGGtaataatatgaaaaaaattgatgacgtaaGAA
ACatattaccttaagtggataaatctTTGcgtgtactaattttcgcgaga
cgaaaatttaaaagatttcgcgtggattaaatttcgcgaaaattgcctta
tttatttcatttcgcgactatataaattgtaactagaaaagagatgtgtg
ctttttaatcgaacaaaGACAGACAAAGTCAATGAAAAGcattcaaaaaa
cttcaaagaaagtACTTTTAGGAGGTTACTAGagtttaaaattgaaatga
agagTTGAACTGAACTCGTATTATGTTTTGATTgtaacttttattttcgc
gattgtaaaattccaaataaattcgcgtggactaattttcgcgaatcaaa
ggccttcaaaattttcgcatggactaaatttcgcgaaaatggccgaaatt
tgcgaaaaccgcgaaaattaatccacgcaaaaatttatccacttgaGGTA
CAAAGGAACCGAACTAGGGTTAACAGAAAGTTCGATAAATACGATTTGCT
TGGAGAAGAATCAAACTTAGTATCAGTTTTATAATCACTGAAGGAGCATC
AagtgatttcaattttattgagTGTTTAAATGACACTTTGCGGTTGACCG
GTGTTTCGTTAAACGTCAAGATACACCACGTGACTCGTGTGGAGAATCCT
TATAAAGCTATATCATTCATATGAAGCAAAAAACGACATATTAATTACGA
TATTCAAACTTTCAATTTCGTTGATATTAAACCGGCTGAGGCTTCTGTAA
AAATGGTTTGTAAAATAATGCGTgtttgtagaaataaaaggtcTGTACGA
CCTTTTTTACACACCCcttatgaagaaaaaagaatgcttTCCCTTTACTA
ATGTAAGGCCTGAGAAGAGAGAATTGAAGAGagtgaaagaagaaaaagtc
tcaaaatcgaATCAACTAAAAAGAAAGCCGTCTTTAATGATAAAATGATC
AACATTATTATAACAGATGCGACTGATTAGTCAAACCCAGCCTTCACATT
TCTCAAAAGACAAGAAGCTCTTAAAATTCACGTCGTTGATAACCAGAAAT
TAATTGCCAGTATGACCGATAACGATGTTATTCAAACATCGCTCATAGAT
TTCACGTCGATGCagttttatgacctcttttttgAGATATTCAATGAAGT
AGTTGAACGTTTCAGGTTCTGGGAGCAGAATTTGTTGAATCGTCTTCTAA
TTTCTTAACTCTTTAACTGCCGtgcgtattttttaaggttcgacctattt
gccacggaaaGTAATGAAGGTGCGACCTATTAATCACATGTCGGCATATG
CTGACATGAGTTGCCACAGAGTTTATAATCACACTTAcctttattttctg
aaaaaatatcagaaatatgAGTGATGTGTGTTTAATTTGAGTTGAAAata
tataattatgaaaaacatctttgaactacattttaattattcaatagtGC
TACTCTCGGCTgcttaataaacgtacatgaaTTTCAACAAACATTTTCCT
CAATTTCAAGTGCCTACTTGTGTTTCTTAAGGCTAAATATCCTTCTTTGA
ATATGGAGGTTTTATCTATTTGTCAAATGAAAGCAGAATAACTATTATTT
ACCCCCGAACCTGAAAAGACCCTTTAATTACGTTTTTACACCTCTATTTT
CAACCCTGTATGTTTATTCGTTACTTTACGTTTATTAGGAACTCGAGAGT
AATAAAATCTAGTTCAAATTTGAACGAAAGTGCAAGTGCCGGCAAAGAAA
TCGACAATATGCTCTTGTCGGCATATGCCAacatcggcacggaaagggtt
tcAGTcgaaaaatcaatcaatcattcaaCACAATATTTTAACATTTCCTA
TAATATAAGTCGTCTATTTATGTGAGCAAGGTGTCCCCTTAGAAGGAAGA
TTGTAATGCCTCGATACCTGCCTTGTCTCTAGCATCTATGAAAATTCCAT
AGCGTAATGGGTAAttgaccactgcgcgctaatgacgacttactattggt
ccaaagttttgaaaaacgtttaatattttttcgtCTAGCCAACGGAAAGC
cgttatggaggcgcaatcagtcctgattacccatgatccatttcagCGCC
ACTTGAAAATTGACTTTATTTTCATCtccatttaaaattcaatggaaaaa
ttgcactccaaaaccatcccaactgGATTTATTGAGCCGAGAAGAAACTC
CACTGgagctgcgagacaggggtgttctatCATTAGATCAATACGCCTTG
TTTTTGATGAGAAGTGTTCTCTTGTTCTAAAACCGTGTCATAATCGCTTT
ACGAATCTTTGTGTACCAGtcaaaaatctaaacaaaaaaaCAGAGAGTTT
TTTAAATAATTGTTCAACCCAATATCTtaaattctttaataatttgttta
tattactaaaataaaaaatctttcaaataattTGCTTCATTTACAATTCT
GAGATCCTTTTCTATCAGATCGTGTTGCAGGCAATCCTTATTGACATTAT
TTCTAAAATTTAGATGGGTGGAAAAAGGGGAAGAAAAGCCAAAGATTTCC
TATTTTGGGCTCccaatgaaaaaaatctttttacccCTTAGAATTGTCAA
AAAATTCCATACAGTACaatgctttaaaaaaaaattcacaaaattgcaaa
aaatctaaagaaactGGATGAGGAAAATGTTAAAGAATAAACACAAGGAC
AAAATAAAGTCGTCTAAAAAGATCAAATACAAACTTTCCCATGAGTAAAA
TGTTCtataaattttacattttatttcaagttagaagttttacagatttt
cgattttgtcaagaatttttcacgagcataaacttttgcgaaaatCACGA
AACTTTCTGCCtgcaaataataaaataatgcTAAATTCCCCCCCTACAAA
CATATAGTTTGTGGTGAATTggctttttcaaaaactgcttcGGGATTAAA
TATTTCCGTTGTGTTCAAATATGAGTTTCTTGTCATCAAcgatatttatt
ttgaaaatccttttcctATTGAGTGTTTTTGAAGgctggttttgttttta
cagtgTCGTCCAAAGAAACTTTGTCATCCTTTATTATATAGTGTTTATCA
ATTTATCACCGAAGTCAAATTGGTTTTCTACAGTTAGTTTTCTTTTGATA
TCTTCCCTTGTTTCACTCTCTTCAAATTCTCTCGCTGGGAAGTCCAAGAT
CTCCAAACTTTCTCTAATCTACAAGAATACATCCCGTTTGTATCGACAAC
GACGAATCTCCGCATATCCTTTCTTATTCAGTTTAATTCATCCTAATTTA
GATTTGAAGAAGATACTTTATATCTTTGAGTATTTATCATTTACTTGGCT
TATTTGATACAATAATTTCCATCAGAAGTTAAACGTTCAACCTGTTCTTT
GAGTAGCTCAAAAAAGAGATCATAAAACTGCTTCGACGTGAAATCGGTAC
GCAGTGTTTGAATAACATCGTTATCGGTCATACTGGCAATGAATTTCTCG
TTATCGATGACGTGAATTTTAACAGCTTCTTGTCTTTTGAGAGCTGTGAA
GGCTGGGTTTGAGTCATCATTTGCATCTGTTATAATAATGTTGATCATTT
TATCATCAAAGACGGCGTTCTTCAgttgatttgattttgaggcttttttt
tcttttactctcTTCAATTCTCTCTCCGTGATTTTCGATTCACTTTTCTC
AAAATAGATAATGCAATTGCCCATCATACACCTCCTTATGGAAAGAGCTG
GCCaaatatcatcaaaattgaaagtttgaatATCGTAATTAATATGTCGG
TTGTTTTGCTTCACAACCCAGCGGTATGAATGATACATAGCTTTATAAGG
ATTTTCCTTACGAGTCACGTGGTGTATCTTGACGTTTAACGAAACACCGG
CCAACCGCAAAGTGTCATTTAAGCTCTCAATAAAATCAAACACTTTCCTA
ACGTCAATTCCATCTTTGAAATCACTGAACGCTCCCTCAGTGATTATAAA
ATTGATGTTAAGTTGATTCTTCTCCAAACAAGTCGTATTTATCGAATTTT
CTGTTATCCCTAGTTCAGTTCCTTTGTAGTCGGGATTACGTAATATGTTT
CTTACGTCATCAAATTGTTCCATATGCCTGCCAAGATGGTACCACAAGTT
TCGGCGCTGGGTTGAAAGCCAAGTGAAGTTTGGAGCATACATAACCATTG
ACAATAGGATGATTGcatattgttttttgttttgaagctTTGATAAAGCA
TCTGTTGTTTTATCGTCCATTGAGTGACCAGTGATATACAAAACGACATT
ATGCGTTCCCTTAGTGTTTCTTCTCAGCTCTTCCTTAAAGAATGTGTGAG
AGCCAATAGGGTAGACAGGAGCCTTAATAGGATCCTTCACCTCAGGACGT
TGTTGGATGAATTGGTTAGGTTCGTCCAGATTAATCGTGATGAGGTCATT
GTAATATTGATTGAGAACCTTTGGAACCAAATCTTTAGAATCTCGGATGT
TCATTACTTTCTGTTCCAGCTGATCATAAAAACAGATTTCATAACATTCA
TCAGTGTGGAATTCTCTCAATAACATGTCAAAGAATTTAAGCCACTCATT
TCTAGGATGAACTTCGACAGGATTAACATTGTCAGCGCGGACCAACACTT
TATACATTACGAGTGGCTGCCATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053560-exon-scaffold_233-1491911889:517159..517321 | TCONS_00053560-exon-scaffold_233-1491911889:517159..517321 | Clytia hemisphaerica | exon |
| TCONS_00053560-exon-scaffold_233-1510915933:517159..517321 | TCONS_00053560-exon-scaffold_233-1510915933:517159..517321 | Clytia hemisphaerica | exon |
| TCONS_00053560-exon-scaffold_233-1575043694:517159..517321 | TCONS_00053560-exon-scaffold_233-1575043694:517159..517321 | Clytia hemisphaerica | exon |
| TCONS_00053560-exon-scaffold_233-1491911889:523349..523834 | TCONS_00053560-exon-scaffold_233-1491911889:523349..523834 | Clytia hemisphaerica | exon |
| TCONS_00053560-exon-scaffold_233-1510915933:523349..523834 | TCONS_00053560-exon-scaffold_233-1510915933:523349..523834 | Clytia hemisphaerica | exon |
| TCONS_00053560-exon-scaffold_233-1575043694:523349..523834 | TCONS_00053560-exon-scaffold_233-1575043694:523349..523834 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:517159..523834 + |
Blast
The following BLAST results are available for this feature:
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