TCONS_00053562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053562
Unique NameTCONS_00053562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053562 ID=TCONS_00053562|Name=TCONS_00053562|organism=Clytia hemisphaerica|type=transcript|length=4577bp
ggtcttacacgtttttttataagaacaaactatataaaggCTTTGTGGAT
TCTaaacactcaatttcttaaCAAAATGTCCAACatactcacaaaatgtt
gaaattaagaacatcttcagaaaatttttaggcttaaaactcaaagagtt
aagaacatctgttatgcacagatatgtaatttttgcgcataTAGGTAATT
ATTTTGCGCCGATCTTTAACATCAAGGGTACTTGATAATTTTACCTAGAC
TTTTACCTTCTTTGGACTtagatattttatcaaataccaagcaaaaatat
aaataaatatataatcaaaaacatcaaatacAAGAAGTATCAATCCATTT
TAAGAGGTTTTCGTAAAATTTTTATATCTTATAAGCATcgactttataag
aacataattcATAATTCTTCAACCAAtcattattagctttcggtgatcag
TTCTTTCAAGGCAAACATGGGATCGTGCTTAAATtggaaaactttatttt
tttataagcatcgactttataaaaacacaattcataactcttcaACCAAT
CATTATTTGCTTTCGGTGATcagttctttcaaagcaaacatgggATTGTG
cttgaaaaagaaagatttatttttcGTATAAGCATcgactttataagaac
acaattcataattcTTTACCCAAtcattattagctttcggtgatcagTTC
CATCAAAGCAAACATGGGATTGTGCTTAAATTggaaagatttatttttct
tataagcatcgactttataagaacacaattcataattcTTTACCCAATCA
TTATCAGCTTTCGGTGATCAGTTCCATCAAAGCAAACATGGGATTGTGCT
TAAATTggaaagatttatttttcttataagcatcgaCTTTAttagaacac
aattcataattcTTTACCCAATGAtcattagctttcggtgatcagttctt
tcaaagcaaacatgggATTGTGCTTAAAATAGAAACATTTGTtcttctta
taagcatcatttTTGTAAGAACACTAGCCTATTCATAAGTCGTCACCCAA
TATTTGTTGTCTTTCTCTGAAAGCCAATTCTacttagaaaaaaaagttat
aaaattaataaaaagataATGTTTGTAAGAAAAATAGAATTTAGTTTAAA
TTTAGGAAAATCCCTATTTCTTTCGATCGAGCGGTTTCAAAAAGCCAATT
TCgattaagaacaaattttatCTCCTTATCTTCCTTTAGATTAAATGGCT
CACAGTCGAATATTTCGCCTTTTAGTTTAACATTGTAAGgaagaaataag
aaaagaaatagGAGCTAAAGTTAACTTTACAATCAGTGtcaaaatatatt
tgaatttaACCACTATTTTAGTACTTCCACTCTATTTCATTGAATACTTC
AATAAAATAGTTTGACTTGTAGATCGAGCcatgaaaagaaaaaggttgAT
AGTTTTCTCATAAACTAGTCCATGTATTTTGTCCATGTAAAGGTAAAGAC
AGCCAgtaggtttttattttattccactgtaaaaaatgcaattcatatct
acaaaatcaataaagtttacATGGGTGCAAATACTATCATATATTTTTCT
CAGGCTGTACcaataagaaaaatagatatccAAACcttgtgtttactttg
caagATTGGTATCTAACCATCTGCTAAGATTTATTGATTTAAgatattaa
aatgaaaaaaatagatGCTTCAAAGGAAAAGCAGATACACTCATATggag
ttttttatttcattcttataatatagttgcttataagaaaaataaaaatg
tccatATTGTTTACAATTCCTTGTTTACTCTGTGAGAACCAATTACCGAA
ATGTGTAAAccattctatcaaaagtttttgagttgactcttataaagtag
ttgcttataagaaaaacaagacgacttgaagtcgaaaatttcgcctagaa
tttgaactgcatgggaaaaacaagaagtagagattgaagctaatctgaaa
tctactttacatcgagccttgatgaagcaattttacaagaacaacgagtc
ttaaaatcactaaaaaaataagaacaatttaagaaaaaattttgttcaat
ttttaagaactcttataaagtatatgcttataaaaaataaatatgctcat
attgcacgccatcccttgtttactttataagaactaattaccggaaggta
tatcaccgtctatcaatagttattatttgattcttataaagcagatgctt
ataataaaaatgaacaaatcaattgaatgattaataTTAAAATCgagcaa
attaaaaaataattccgAGAAAAAACGTAGTCCTAAAGATCgggttttac
atatctgcgcagaaatttaattacatatttgcgcagctCCAAATTACATA
AATGCGCAAAATAATcacatatttgcgcagaaattacatatctgctcATC
ACAACATCCTAAGGctcaaaaagttttggatgCTCAAATGAGTTTCTAGT
CATCAAAGATATTTATGCAAGTTCTTTTCCTATTGAGGGTTGTTGGTAAC
TGGTTGGTTACTGTTGCTGGTTATTGTTTTTTCAGTGTCGTCCCAATAAA
CTTGGTCATCCTTTATAATATAGTGTTTATTGATTTATCACCGAAGTCAA
AGATGGTTTTCTACAGTtagtttattttgatattttcgctTATTTTACTC
TCTTTAAATTTCTCTTGCTGGGAAGTCCAAGCTTTCCAAACTTTCTGTAA
TCTACAAAAATACATCCCGTTTGTATCGACAACGACGAATCTCTATCCTT
TCTTATTCAGTTTAATTCATCCTAATTTAGATTTGAAGATGATACTTCAT
ATATCGCTGAGTATTTATCATTTACTTGCCTTATTTGATACAATAATTTT
TATCAGAAGTTAAACGTTCAACCTGTGCATTGAGTAGctcaaaaaagaaa
tcataaaacTGCTTCGACGTGAAATCTGTGCGCGGTGTTTGAATAACATC
GTTATCGGTCATACTGGGAATGAATTTCTCGTTATCGACGACGTGAATTT
TAACAGTTTCTTGTCTTTTGAGAGCTGTGAAGGCTGGGTTCGAGTCATCA
GTAGTGTCTGTTATAATAATGTTGATCATTTTATCATCAAATACGGCGTT
CTTCAGTTGAttcgattttaaagctttttcttctaTTACTCTGAGCAATT
CTCTCTCATTCAGACTGTTAAAGATGTTAAAGCACACTCTTTTATGTATT
TTATCTTCGCAAGTTTTGTCGATAAAAGGTCGAAAAGACCTCTTACTTCT
ACAAGAAGTTACTGTTTTACAAACCATTTCTCTAGATACATCAGCTGGCT
TAATATTGTCGAAATTGAAAGTTTGAATATCGTAATTAATATGTCGTTTG
TTTTGCTTCACAACCCAGCGGTATAAATGATACATAGCTTTATAAGGATT
TTCCACACGAGTCACGTGGTGTATCTTGACGTTTAACGAAACACCGGTCA
ACCGAAAAGTTTCATTTAAGCTCTCAATAAAATCAAACACTTTCCTAACG
TCAATTCCATCTTTGAAATCACTCGATGCTCCTTCGGTGATTATGAAACT
GATATTAAGTTGATTTTTCTCCAAACAAGTCGTATTTATCGAATTTTCTG
TTATCCCTAGTTCAGTTCCTTTGTAGTCAGGATTACGTAATATGTTTCTT
ACGTCATCGAATTGTTCCATATTCCTGCCAAGATGGTACCACAAGTTTCG
GCGTTGGGTTGAAAGCCAAGTGAACTTTGGAGCATACATAACCATTGACA
ATAGGATAAttgcatatttttttttgatttgaagctTTGATAAAGCATCT
GTTGTTTTATCGTCGATTGAGTGACCAGCGATATACAAAACGACATTACG
CGTTCCCTTAGTGTTTCTTCTCAGCTCTTCCTCAAAGAATGTGTGAGAGC
CAATAGGGTAGACAGGAGCCTTAATAGGATCCTTCACCTCAGGACGTTGC
TGGATGAATTGGTTAGGTTCGTCCAGATTAATCGTGATGAGGTCATTGTA
ATATTGATTGAGAACCTTTGGAACTAAATATTTAGAATCCCGGAAATTCG
TTTCTTTCTGTTCCAGCTGATCATAAAAACAGATTTCATAACATTCATCA
GTGTGGAATTCTCTCAATAACATGTCAAAGAATTTAAGCCACTCATTTCT
AGGATGAACTTCGACAGGATTAACATTGTCAGCGCGGACCAACACTTTAT
ACATTACGAGTGGCTGCCAAATAACAATGATGCGAGTCTTGTCTAcacaa
aatgaaaagttttctgCAAGTGAAAAAGTGACATTTCTAATGATCAATAA
AAGCACTGGTACTATTGCCAATGAAACTTTCATCTTGAACCGatttttaa
tttcgccttagcgaaagtattgtcagtcagggaaatccctcaattgcggt
agtaatttcttactgcaattgcggtataaacgtcacttttgaatttttca
tataccgcaattgcagtatattcaagaaacagaattcaagattcaaggag
aaaacaggcaatttttgtacataattg
Run BLAST on NCBI

transcript from alignment at scaffold_233:539744..544320+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053562 ID=TCONS_00053562|Name=TCONS_00053562|organism=Clytia hemisphaerica|type=transcript|length=4577bp|location=Sequence derived from alignment at scaffold_233:539744..544320+ (Clytia hemisphaerica)
ggtcttacacgtttttttataagaacaaactatataaaggCTTTGTGGAT
TCTaaacactcaatttcttaaCAAAATGTCCAACatactcacaaaatgtt
gaaattaagaacatcttcagaaaatttttaggcttaaaactcaaagagtt
aagaacatctgttatgcacagatatgtaatttttgcgcataTAGGTAATT
ATTTTGCGCCGATCTTTAACATCAAGGGTACTTGATAATTTTACCTAGAC
TTTTACCTTCTTTGGACTtagatattttatcaaataccaagcaaaaatat
aaataaatatataatcaaaaacatcaaatacAAGAAGTATCAATCCATTT
TAAGAGGTTTTCGTAAAATTTTTATATCTTATAAGCATcgactttataag
aacataattcATAATTCTTCAACCAAtcattattagctttcggtgatcag
TTCTTTCAAGGCAAACATGGGATCGTGCTTAAATtggaaaactttatttt
tttataagcatcgactttataaaaacacaattcataactcttcaACCAAT
CATTATTTGCTTTCGGTGATcagttctttcaaagcaaacatgggATTGTG
cttgaaaaagaaagatttatttttcGTATAAGCATcgactttataagaac
acaattcataattcTTTACCCAAtcattattagctttcggtgatcagTTC
CATCAAAGCAAACATGGGATTGTGCTTAAATTggaaagatttatttttct
tataagcatcgactttataagaacacaattcataattcTTTACCCAATCA
TTATCAGCTTTCGGTGATCAGTTCCATCAAAGCAAACATGGGATTGTGCT
TAAATTggaaagatttatttttcttataagcatcgaCTTTAttagaacac
aattcataattcTTTACCCAATGAtcattagctttcggtgatcagttctt
tcaaagcaaacatgggATTGTGCTTAAAATAGAAACATTTGTtcttctta
taagcatcatttTTGTAAGAACACTAGCCTATTCATAAGTCGTCACCCAA
TATTTGTTGTCTTTCTCTGAAAGCCAATTCTacttagaaaaaaaagttat
aaaattaataaaaagataATGTTTGTAAGAAAAATAGAATTTAGTTTAAA
TTTAGGAAAATCCCTATTTCTTTCGATCGAGCGGTTTCAAAAAGCCAATT
TCgattaagaacaaattttatCTCCTTATCTTCCTTTAGATTAAATGGCT
CACAGTCGAATATTTCGCCTTTTAGTTTAACATTGTAAGgaagaaataag
aaaagaaatagGAGCTAAAGTTAACTTTACAATCAGTGtcaaaatatatt
tgaatttaACCACTATTTTAGTACTTCCACTCTATTTCATTGAATACTTC
AATAAAATAGTTTGACTTGTAGATCGAGCcatgaaaagaaaaaggttgAT
AGTTTTCTCATAAACTAGTCCATGTATTTTGTCCATGTAAAGGTAAAGAC
AGCCAgtaggtttttattttattccactgtaaaaaatgcaattcatatct
acaaaatcaataaagtttacATGGGTGCAAATACTATCATATATTTTTCT
CAGGCTGTACcaataagaaaaatagatatccAAACcttgtgtttactttg
caagATTGGTATCTAACCATCTGCTAAGATTTATTGATTTAAgatattaa
aatgaaaaaaatagatGCTTCAAAGGAAAAGCAGATACACTCATATggag
ttttttatttcattcttataatatagttgcttataagaaaaataaaaatg
tccatATTGTTTACAATTCCTTGTTTACTCTGTGAGAACCAATTACCGAA
ATGTGTAAAccattctatcaaaagtttttgagttgactcttataaagtag
ttgcttataagaaaaacaagacgacttgaagtcgaaaatttcgcctagaa
tttgaactgcatgggaaaaacaagaagtagagattgaagctaatctgaaa
tctactttacatcgagccttgatgaagcaattttacaagaacaacgagtc
ttaaaatcactaaaaaaataagaacaatttaagaaaaaattttgttcaat
ttttaagaactcttataaagtatatgcttataaaaaataaatatgctcat
attgcacgccatcccttgtttactttataagaactaattaccggaaggta
tatcaccgtctatcaatagttattatttgattcttataaagcagatgctt
ataataaaaatgaacaaatcaattgaatgattaataTTAAAATCgagcaa
attaaaaaataattccgAGAAAAAACGTAGTCCTAAAGATCgggttttac
atatctgcgcagaaatttaattacatatttgcgcagctCCAAATTACATA
AATGCGCAAAATAATcacatatttgcgcagaaattacatatctgctcATC
ACAACATCCTAAGGctcaaaaagttttggatgCTCAAATGAGTTTCTAGT
CATCAAAGATATTTATGCAAGTTCTTTTCCTATTGAGGGTTGTTGGTAAC
TGGTTGGTTACTGTTGCTGGTTATTGTTTTTTCAGTGTCGTCCCAATAAA
CTTGGTCATCCTTTATAATATAGTGTTTATTGATTTATCACCGAAGTCAA
AGATGGTTTTCTACAGTtagtttattttgatattttcgctTATTTTACTC
TCTTTAAATTTCTCTTGCTGGGAAGTCCAAGCTTTCCAAACTTTCTGTAA
TCTACAAAAATACATCCCGTTTGTATCGACAACGACGAATCTCTATCCTT
TCTTATTCAGTTTAATTCATCCTAATTTAGATTTGAAGATGATACTTCAT
ATATCGCTGAGTATTTATCATTTACTTGCCTTATTTGATACAATAATTTT
TATCAGAAGTTAAACGTTCAACCTGTGCATTGAGTAGctcaaaaaagaaa
tcataaaacTGCTTCGACGTGAAATCTGTGCGCGGTGTTTGAATAACATC
GTTATCGGTCATACTGGGAATGAATTTCTCGTTATCGACGACGTGAATTT
TAACAGTTTCTTGTCTTTTGAGAGCTGTGAAGGCTGGGTTCGAGTCATCA
GTAGTGTCTGTTATAATAATGTTGATCATTTTATCATCAAATACGGCGTT
CTTCAGTTGAttcgattttaaagctttttcttctaTTACTCTGAGCAATT
CTCTCTCATTCAGACTGTTAAAGATGTTAAAGCACACTCTTTTATGTATT
TTATCTTCGCAAGTTTTGTCGATAAAAGGTCGAAAAGACCTCTTACTTCT
ACAAGAAGTTACTGTTTTACAAACCATTTCTCTAGATACATCAGCTGGCT
TAATATTGTCGAAATTGAAAGTTTGAATATCGTAATTAATATGTCGTTTG
TTTTGCTTCACAACCCAGCGGTATAAATGATACATAGCTTTATAAGGATT
TTCCACACGAGTCACGTGGTGTATCTTGACGTTTAACGAAACACCGGTCA
ACCGAAAAGTTTCATTTAAGCTCTCAATAAAATCAAACACTTTCCTAACG
TCAATTCCATCTTTGAAATCACTCGATGCTCCTTCGGTGATTATGAAACT
GATATTAAGTTGATTTTTCTCCAAACAAGTCGTATTTATCGAATTTTCTG
TTATCCCTAGTTCAGTTCCTTTGTAGTCAGGATTACGTAATATGTTTCTT
ACGTCATCGAATTGTTCCATATTCCTGCCAAGATGGTACCACAAGTTTCG
GCGTTGGGTTGAAAGCCAAGTGAACTTTGGAGCATACATAACCATTGACA
ATAGGATAAttgcatatttttttttgatttgaagctTTGATAAAGCATCT
GTTGTTTTATCGTCGATTGAGTGACCAGCGATATACAAAACGACATTACG
CGTTCCCTTAGTGTTTCTTCTCAGCTCTTCCTCAAAGAATGTGTGAGAGC
CAATAGGGTAGACAGGAGCCTTAATAGGATCCTTCACCTCAGGACGTTGC
TGGATGAATTGGTTAGGTTCGTCCAGATTAATCGTGATGAGGTCATTGTA
ATATTGATTGAGAACCTTTGGAACTAAATATTTAGAATCCCGGAAATTCG
TTTCTTTCTGTTCCAGCTGATCATAAAAACAGATTTCATAACATTCATCA
GTGTGGAATTCTCTCAATAACATGTCAAAGAATTTAAGCCACTCATTTCT
AGGATGAACTTCGACAGGATTAACATTGTCAGCGCGGACCAACACTTTAT
ACATTACGAGTGGCTGCCAAATAACAATGATGCGAGTCTTGTCTAcacaa
aatgaaaagttttctgCAAGTGAAAAAGTGACATTTCTAATGATCAATAA
AAGCACTGGTACTATTGCCAATGAAACTTTCATCTTGAACCGatttttaa
tttcgccttagcgaaagtattgtcagtcagggaaatccctcaattgcggt
agtaatttcttactgcaattgcggtataaacgtcacttttgaatttttca
tataccgcaattgcagtatattcaagaaacagaattcaagattcaaggag
aaaacaggcaatttttgtacataattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033804XLOC_033804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053562-exon-scaffold_233-1491911889:539744..544320TCONS_00053562-exon-scaffold_233-1491911889:539744..544320Clytia hemisphaericaexon
TCONS_00053562-exon-scaffold_233-1510915933:539744..544320TCONS_00053562-exon-scaffold_233-1510915933:539744..544320Clytia hemisphaericaexon
TCONS_00053562-exon-scaffold_233-1575043694:539744..544320TCONS_00053562-exon-scaffold_233-1575043694:539744..544320Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:539744..544320 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.983795	0.972187	1.21678	0.921792	5.56856	4.04237	5.57809	5.22948	4.09161	4.93253	4.55987	4.13687	4.91813	3.40252	3.62015	4.26953	2.51181	3.31695	6.7985	6.81553	5.72589	5.69626	3.72826	4.80947	6.83844	8.70768	6.08723	4.18704	4.59435	4.44446
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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