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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053566 ID=TCONS_00053566|Name=TCONS_00053566|organism=Clytia hemisphaerica|type=transcript|length=2968bp
cagtATTAACGACATACTGTACTCCTAAATCGAAATATTTGAgatgaaaa
agatattgacatgcatacaaaaaattcttacactaaaaggtaaataaacC
AATTAATAATCAATTTGACAATAGCTATAATGGCAAAAGGCAATCAAATT
GTTGAGTTGATTAACAGGAATAATTGCATGTCTGTATGAAAATGAGCAAA
ATGAACTAATTGGAATGAATCATATTTGTCATACCACTTGAGAAGAGATA
GAGGTGGTGGAATATAGATGGTCATATTTTACTGAGAAGAGTAAAGTTTA
GACTGAGTCGTACGATTTATGATACGAAGATGTCGATCCGAAGTATAGGA
GGCAATTTACTTGGTAGCCGACGCAAGGAAAATCACTATAATGTCACTCT
AGATGATCAAAACAATCGAGCTAACGGGCGTGACCATTTATCACAGTTTG
AGAGAGGCAGTATGCTTCCAGTTGGTGCAAGCCGTAAAGACATCACTCGA
ATAAAGAACAAAGCTTACACATATTCAGAGAACTTCTCAATCATTGGATT
AACTCGAGTCTTTACTGGAAACCCTGTTGAACGAGCCTTTTGGTTTTGCG
TATTAGTTGTTGCCATATCAATAGGAGTTTACATGAGTAGTGAACTTATC
ACCAAATATATCAAAAAGGACGTGAGAGTGGACAAGCAGACTATAATCAC
TGATAGTAACCACTTTCCAACTGTCACCATATGTTTGAAGCCACCTCGCA
AAAAGAAATATTGCAATCTAGCCATCGTTAGCAACCCTGGTCAAGATAGT
AATATGCAAGAACCATGCCCAGATGAGTATGATTCGACAGAAAGGAATGA
AACATTGCGATCAACTGTAGAAAAGAATCATATTACAATCGGTGACTTTA
AGATCTCATGCCAGGAACGTGGTATTTGTGAAAGTTTCTCTGATCTGATT
AATACGTATTTCAAAGTGGAAACCAGTTTCGAGAATTGTTTGATTTGGAA
TTATGATGGAACATTTTTTAATGACGAGAACCGGTTCGATATTGATATTT
CTATTCTGAACACGAAAAAAGAAGTCTTTGACCATCAGAAAGATGACATT
CGAATCTACGTAAGTCCAAAAAGTGTTTACCTCCCTCTACAACACAACTA
TCTCACAACCNAAAAGGGATGGACTATAGAGGAGATCTTAGAAAACATTC
TCgattgatttttgtgatttttctcaACCGTTAAGATGTCGTTTTGTAGA
AATGTTTCCCCTGTCCACGTGACTCTAAAATTGTTGTTATATTTATCATT
CAATTATAGAAAATTATCAATCTAAACTGTGCCTATTTataaaaatactt
caatattattatattaACTTTTACAAACTAAAACTAGATATATTGTATAA
TGAGATAAAAGGGCAAAACTGACTACTTGATAAGTACTACTTCTTTTGTC
TTCGAATACGCGTATAATAATAGAGGGGTGGACTATGTCGATTGGTCCAC
CCCTCCATGGATTGNTCAAAGAGGTGCATaattgctttgaaaaaatgtgg
agATACTTATGACTTTTGCAAAGACTTTTTACCCTTTGACTTGGTTGATG
AATACCACGACCCTGAAAAAAGTATTCTCGAAATTCATCGATGTTTAGAT
CAAAGTTATTACCAAGAGCGAAAGGTGACAGATTGCGAGCTTCCATGCAA
GGAAACTTCCTTTGATATTTATGGATCAAGTTATCACTTCAAAGAAGACA
TTAACAAAACGAACTTTAAGTTGAGCATGAAATTCGAGAGCCCTTACGTC
TACAACCTAGAGCAGGAAGAAGTGTTGTATAGTTGGGGAGATTTCCTTGG
AGGTTTAGGGGGAAACATTGGTCTATTTTGTGGGTTCTCTTTACTTTTTC
TGATTGAGATAGCTGCTTTTGTTGTATTGAGATGTTGGGCTAAAGTTGCC
AAGAAACATTTGGTGCGAAGAGAACGTATAATTAAACGACAAAGTCGAAG
TGAGTTTCCAAATGATGATGTGGAGTTAAAAGAAGTAGCAATGGGTGAGA
GTGAAGAATTTGCTGATGACCAACATTCTAGTGATGTCAGTGATGAAGAG
ACGGATCCAACGCTTCAATATGATAAAAATCATGATGAAATTACGGGCGA
AAGACTTTATTACTCACAGACATTGATATAGAAGAAGTATCATTTATTGC
GGCAATTCAGAATATCCTGATAGGTTGGGGTCCGGAAGAGGGGTGCgaat
aatatttttttccaatgaaaaaaaaaaacagaaagaagTAAGAATTAAAA
GTAGAAGAATAATCTACTCGAAAAAAAGAAAGGACAAACGGATGATTATG
GTTGAGGAAAAGTAGGAAACTTACTcggggaaaaaagaaaaatttcttag
gaaagttTTCCTATAAGCAAAGTATTACCTGACTATTAAGTTTTCTCCTT
TAAGTTTTGAAACAAATAACGGATGGAATTTTTTTACTCtacatatttta
aacaaaaccaATGTAaatagaatttaatggaaaacaAGAGAAAATGTTTA
ATGCAACGAAACAACACTGCTACAAATTCGACTCGATTATCTGTATCTAA
CACATAAAAGGGATGGACTATAGAGGAGATCTTAGAAAACATTCTCgatt
gatttttgtgatttttctcaACCGTTAAGATGTCGTTTTGTAGAAATGTT
TCCCCTGTCCACGTGACTCTAAAATTGTTGTTATATTTATCATTCAATTA
TAGAAAATTATCAATCTAAACTGTGCCTATTTataaaaatacttcaatat
tattatattaACTTTTACAAACTAAAACTAGATATATTGTATAATGAGAT
AAAAGGGCAAAACTGACTACTTGATAAGTACTACTTCTTTTGTCTTCGAA
TACGCGTATAATAATAGAGGGGTGGACTATGTCGATTGGTCCACCCCTCC
ATGGATTGAACTCAATTT Run BLAST on NCBI protein sequence of Sodium channel >TCONS_00053566-protein ID=TCONS_00053566-protein|Name=Sodium channel|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MSIRSIGGNLLGSRRKENHYNVTLDDQNNRANGRDHLSQFERGSMLPVGA
SRKDITRIKNKAYTYSENFSIIGLTRVFTGNPVERAFWFCVLVVAISIGV
YMSSELITKYIKKDVRVDKQTIITDSNHFPTVTICLKPPRKKKYCNLAIV
SNPGQDSNMQEPCPDEYDSTERNETLRSTVEKNHITIGDFKISCQERGIC
ESFSDLINTYFKVETSFENCLIWNYDGTFFNDENRFDIDISILNTKKEVF
DHQKDDIRIYVSPKSVYLPLQHNYLTTXKGWTIEEILENILD Run BLAST on NCBI transcript from alignment at scaffold_233:626657..630136+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053566 ID=TCONS_00053566|Name=TCONS_00053566|organism=Clytia hemisphaerica|type=transcript|length=3480bp|location=Sequence derived from alignment at scaffold_233:626657..630136+ (Clytia hemisphaerica)
cagtATTAACGACATACTGTACTCCTAAATCGAAATATTTGAgatgaaaa
agatattgacatgcatacaaaaaattcttacactaaaaggtaaataaacC
AATTAATAATCAATTTGACAATAGCTATAATGGCAAAAGGCAATCAAATT
GTTGAGTTGATTAACAGGAATAATTGCATGTCTGTATGAAAATGAGCAAA
ATGAACTAATTGGAATGAATCATATTTGTCATACCACTTGAGAAGAGATA
GAGGTGGTGGAATATAGATGGTCATATTTTACTGAGAAGAGTAAAGTTTA
GACTGAGTCGTACGATTTATGATACGAAGATGTCGATCCGAAGTATAGGA
GGCAATTTACTTGGTAGCCGACGCAAGGAAAATCACTATAATGTCACTCT
AGATGATCAAAACAATCGAGCTAACGGGCGTGACCATTTATCACAGTTTG
AGAGAGGTTAGATCATTCTCACTATTGAGAAATACATTATTTCTTTCATT
CATTCTAATTctaataaatattttgactgAAGACCACACCTTTCAGTAGC
AATTCAATATTTCAGTTTCAAATTCGGTACATTTCACAACTATTNTTCAG
TAGCAATTCAATATTTCAGTTGCAAATTCGGTACATTTCACAACTATTTA
ATCTTTTATTCCAGGCAGTATGCTTCCAGTTGGTGCAAGCCGTAAAGACA
TCACTCGAATAAAGAACAAAGCTTACACATATTCAGAGAACTTCTCAATC
ATTGGATTAACTCGAGTCTTTACTGGAAACCCTGTTGAACGAGCCTTTTG
GTTTTGCGTATTAGTTGTTGCCATATCAATAGGAGTTTACATGAGTAGTG
AACTTATCACCAAATATATCAAAAAGGACGTGAGAGTGGACAAGCAGACT
ATAATCACTGATAGTAACCACTTTCCAACTGTCACCATATGTTTGAAGCC
ACCTCGCAAAAAGAAATATTGCAATCTAGCCATCGTTAGCAACCCTGGTC
AAGATAGTAATATGCAAGAACCATGCCCAGATGAGTATGATTCGACAGAA
AGGAATGAAACATTGCGATCAACTGTAGAAAAGAATCATATTACAATCGG
TGACTTTAAGATCTCATGCCAGGAACGTGGTATTTGTGAAAGTTTCTCTG
ATCTGATTAATACGTATTTCAAAGTGGAAACCAGTTTCGAGAATTGTTTG
ATTTGGAATTATGATGGAACATTTTTTAATGACGAGAACCGGTTCGATAT
TGATATTTCTATTCTGAACACGAAAAAAGAAGTCTTTGACCATCAGAAAG
ATGACATTCGAATCTACGTAAGTCCAAAAAGTGTTTACCTCCCTCTACAA
CACAACTATCTCACAACCNAAAAGGGATGGACTATAGAGGAGATCTTAGA
AAACATTCTCgattgatttttgtgatttttctcaACCGTTAAGATGTCGT
TTTGTAGAAATGTTTCCCCTGTCCACGTGACTCTAAAATTGTTGTTATAT
TTATCATTCAATTATAGAAAATTATCAATCTAAACTGTGCCTATTTataa
aaatacttcaatattattatattaACTTTTACAAACTAAAACTAGATATA
TTGTATAATGAGATAAAAGGGCAAAACTGACTACTTGATAAGTACTACTT
CTTTTGTCTTCGAATACGCGTATAATAATAGAGGGGTGGACTATGTCGAT
TGGTCCACCCCTCCATGGATTGNTCAAAGAGGTGCATaattgctttgaaa
aaatgtggagATACTTATGACTTTTGCAAAGACTTTTTACCCTTTGACTT
GGTTGATGAATACCACGACCCTGAAAAAAGTATTCTCGAAATTCATCGAT
GTTTAGATCAAAGTTATTACCAAGAGCGAAAGGTGACAGATTGCGAGCTT
CCATGCAAGGAAACTTCCTTTGATATTTATGGATCAAGTTATCACTTCAA
AGAAGACATTAACAAAACGAACTTTAAGTTGAGCATGAAATTCGAGAGCC
CTTACGTCTACAACCTAGAGCAGGAAGAAGTGTTGTATAGTTGGGGAGAT
TTCCTTGGAGGTTTAGGGGGAAACATTGGTCTATTTTGTGGGTTCTCTTT
ACTTTTTCTGATTGAGATAGCTGCTTTTGTTGTATTGAGATGTTGGGCTA
AAGTTGCCAAGAAACATTTGGTGCGAAGAGAACGTATAATTAAACGACAA
AGTCGAAGTGAGTTTCCAAATGATGATGTGGAGTTAAANTCCCATATTCA
TCAAAATTCCATCGAACTTcacgaaagaaaaaaataacgaaagagTAGAA
GCTAAAACTAAAAACagttaaaacattaaaaactaagaatattttaaagt
aAGTATAAAActtcaaatacaaaataatttAGAAAGTTATTCAAAAATCC
ATCCACATTAAGTATATTCGTTAATTGGCAAAATGAATAAATTTAAGTAT
TGTAATTCNGCCAAGAAACATTTGGTGCGAAGAGAACGTATAATTAAACG
ACAAAGTCGAAGTGAGTTTCCAAATGATGATGTGGAGTTAAAAGAAGTAG
CAATGGGTGAGAGTGAAGAATTTGCTGATGACCAACATTCTAGTGATGTC
AGTGATGAAGAGACGGATCCAACGCTTCAATATGATAAAAATCATGATGA
AATTACGGGCGAAAGACTTTATTACTCACAGACATTGATATAGAAGAAGT
ATCATTTATTGCGGCAATTCAGAATATCCTGATAGGTTGGGGTCCGGAAG
AGGGGTGCgaataatatttttttccaatgaaaaaaaaaaacagaaagaag
TAAGAATTAAAAGTAGAAGAATAATCTACTCGAAAAAAAGAAAGGACAAA
CGGATGATTATGGTTGAGGAAAAGTAGGAAACTTACTcggggaaaaaaga
aaaatttcttaggaaagttTTCCTATAAGCAAAGTATTACCTGACTATTA
AGTTTTCTCCTTTAAGTTTTGAAACAAATAACGGATGGAATTTTTTTACT
CtacatattttaaacaaaaccaATGTAaatagaatttaatggaaaacaAG
AGAAAATGTTTAATGCAACGAAACAACACTGCTACAAATTCGACTCGATT
ATCTGTATCTAACACATAAAAGGGATGGACTATAGAGGAGATCTTAGAAA
ACATTCTCgattgatttttgtgatttttctcaACCGTTAAGATGTCGTTT
TGTAGAAATGTTTCCCCTGTCCACGTGACTCTAAAATTGTTGTTATATTT
ATCATTCAATTATAGAAAATTATCAATCTAAACTGTGCCTATTTataaaa
atacttcaatattattatattaACTTTTACAAACTAAAACTAGATATATT
GTATAATGAGATAAAAGGGCAAAACTGACTACTTGATAAGTACTACTTCT
TTTGTCTTCGAATACGCGTATAATAATAGAGGGGTGGACTATGTCGATTG
GTCCACCCCTCCATGGATTGAACTCAATTT Coding sequence (CDS) from alignment at scaffold_233:626657..630136+ >TCONS_00053566 ID=TCONS_00053566|Name=TCONS_00053566|organism=Clytia hemisphaerica|type=CDS|length=1758bp|location=Sequence derived from alignment at scaffold_233:626657..630136+ (Clytia hemisphaerica)
ATGTCGATCCGAAGTATAGGAGGCAATTTACTTGGTAGCCGACGCAAGGA
AAATCACTATAATGTCACTCTAGATGATCAAAACAATCGAGCTAACGGGC
GTGACCATTTATCACAGTTTGAGAGAGGCAGTATGCTTCCAGTTGGTGCA
AGCCGTAAAGACATCACTCGAATAAAGAACAAAGCTTACACATATTCAGA
GAACTTCTCAATCATTGGATTAACTCGAGTCTTTACTGGAAACCCTGTTG
AACGAGCCTTTTGGTTTTGCGTATTAGTTGTTGCCATATCAATAGGAGTT
TACATGAGTAGTGAACTTATCACCAAATATATCAAAAAGGACGTGAGAGT
GGACAAGCAGACTATAATCACTGATAGTAACCACTTTCCAACTGTCACCA
TATGTTTGAAGCCACCTCGCAAAAAGAAATATTGCAATCTAGCCATCGTT
AGCAACCCTGGTCAAGATAGTAATATGCAAGAACCATGCCCAGATGAGTA
TGATTCGACAGAAAGGAATGAAACATTGCGATCAACTGTAGAAAAGAATC
ATATTACAATCGGTGACTTTAAGATCTCATGCCAGGAACGTGGTATTTGT
GAAAGTTTCTCTGATCTGATTAATACGTATTTCAAAGTGGAAACCAGTTT
CGAGAATTGTTTGATTTGGAATTATGATGGAACATTTTTTAATGACGAGA
ACCGGTTCGATATTGATATTTCTATTCTGAACACGAAAAAAGAAGTCTTT
GACCATCAGAAAGATGACATTCGAATCTACGTAAGTCCAAAAAGTGTTTA
CCTCCCTCTACAACACAACTATCTCACAACCNAAAAGGGATGGACTATAG
AGGAGATCTTAGAAAACATTCTCgattgaATGTCGATCCGAAGTATAGGA
GGCAATTTACTTGGTAGCCGACGCAAGGAAAATCACTATAATGTCACTCT
AGATGATCAAAACAATCGAGCTAACGGGCGTGACCATTTATCACAGTTTG
AGAGAGGCAGTATGCTTCCAGTTGGTGCAAGCCGTAAAGACATCACTCGA
ATAAAGAACAAAGCTTACACATATTCAGAGAACTTCTCAATCATTGGATT
AACTCGAGTCTTTACTGGAAACCCTGTTGAACGAGCCTTTTGGTTTTGCG
TATTAGTTGTTGCCATATCAATAGGAGTTTACATGAGTAGTGAACTTATC
ACCAAATATATCAAAAAGGACGTGAGAGTGGACAAGCAGACTATAATCAC
TGATAGTAACCACTTTCCAACTGTCACCATATGTTTGAAGCCACCTCGCA
AAAAGAAATATTGCAATCTAGCCATCGTTAGCAACCCTGGTCAAGATAGT
AATATGCAAGAACCATGCCCAGATGAGTATGATTCGACAGAAAGGAATGA
AACATTGCGATCAACTGTAGAAAAGAATCATATTACAATCGGTGACTTTA
AGATCTCATGCCAGGAACGTGGTATTTGTGAAAGTTTCTCTGATCTGATT
AATACGTATTTCAAAGTGGAAACCAGTTTCGAGAATTGTTTGATTTGGAA
TTATGATGGAACATTTTTTAATGACGAGAACCGGTTCGATATTGATATTT
CTATTCTGAACACGAAAAAAGAAGTCTTTGACCATCAGAAAGATGACATT
CGAATCTACGTAAGTCCAAAAAGTGTTTACCTCCCTCTACAACACAACTA
TCTCACAACCNAAAAGGGATGGACTATAGAGGAGATCTTAGAAAACATTC
TCgattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053566-exon-scaffold_233-1491911889:626657..627112 | TCONS_00053566-exon-scaffold_233-1491911889:626657..627112 | Clytia hemisphaerica | exon |
| TCONS_00053566-exon-scaffold_233-1510915933:626657..627112 | TCONS_00053566-exon-scaffold_233-1510915933:626657..627112 | Clytia hemisphaerica | exon |
| TCONS_00053566-exon-scaffold_233-1575043694:626657..627112 | TCONS_00053566-exon-scaffold_233-1575043694:626657..627112 | Clytia hemisphaerica | exon |
| TCONS_00053566-exon-scaffold_233-1491911889:627321..628821 | TCONS_00053566-exon-scaffold_233-1491911889:627321..628821 | Clytia hemisphaerica | exon |
| TCONS_00053566-exon-scaffold_233-1510915933:627321..628821 | TCONS_00053566-exon-scaffold_233-1510915933:627321..628821 | Clytia hemisphaerica | exon |
| TCONS_00053566-exon-scaffold_233-1575043694:627321..628821 | TCONS_00053566-exon-scaffold_233-1575043694:627321..628821 | Clytia hemisphaerica | exon |
| TCONS_00053566-exon-scaffold_233-1491911889:629126..630136 | TCONS_00053566-exon-scaffold_233-1491911889:629126..630136 | Clytia hemisphaerica | exon |
| TCONS_00053566-exon-scaffold_233-1510915933:629126..630136 | TCONS_00053566-exon-scaffold_233-1510915933:629126..630136 | Clytia hemisphaerica | exon |
| TCONS_00053566-exon-scaffold_233-1575043694:629126..630136 | TCONS_00053566-exon-scaffold_233-1575043694:629126..630136 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:626657..630136 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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