TCONS_00053571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053571
Unique NameTCONS_00053571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length963

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053571 ID=TCONS_00053571|Name=TCONS_00053571|organism=Clytia hemisphaerica|type=transcript|length=963bp
TTTTGCTGAAGCGGGTGTTGTgttcatgttttttttgttacatttttgtt
tataaagcAAAACCTTGTTGGCAAAAGTTGAGATATCATTAAGAaaacaa
tgaaagaaaaataaccTACACTGTAGCAATGGAGTACACGGGCAGTGGAT
ATTCTGGAGATGAGAAAAATGGAAGGATGCAAGGGCGAGGTGCTTATCAA
TTTCCAGAATCGGTTGGAACGAAATATGTTGGTGAAATGAATGATGGAAA
atttcaCGGGGAAGGAACACTGTATTTTCCAAATGGAGCTAAATATAAAG
GCGAATGGGAGCATGGGAAATGTATCAAGGGCCAGTATGTTTTTGCTGAT
ggattgaaatttgattctgATGAATGGAAGTATTGCAACCGAAACGATAG
AAGGTTTTATACTGAAATTTGTGATGGCCTTAAACCTGCTGGCCGGTCAC
AACTAACAAACAACGAGCCGCCACGAACCATTCCTGATGGATGTTATGAT
TGTGGTGATGGTTTTTATAACCCAAAAACtagagtggtttccacatacAA
CAAAAAGTTCTTGCGTAACGCAGATGATGACGAACATGATTGGATAGTGA
AGCATTGTAGGCGTGGTTGGGATGAACACGTGGGTTACATTAAAGGTTTT
CATAATTAGTTTCTTCTTTCACattctaattttattttaatactCATCCT
TTGTGTGATATTGTATATAATGcctttattttgttaaaaaatatctCGCT
TTTACCTTCAAACCTTTTCTTCATTCTTGTATTTCCGAAAAATTAACTAA
AGATACATcaaatttttactgtcagacttgtAGTTTATCCAGCTAAAGTA
AGACCCTCGTtgtgcactctatcaaaagtacatccATATGAGTCTTCCCC
CGGGTAAATTACTAAAAAGATATTATACTTAGATTTATTTTGGAGTAGTG
TTTTTATTCTATG
Run BLAST on NCBI

protein sequence of TCONS_00053571-protein

>TCONS_00053571-protein ID=TCONS_00053571-protein|Name=TCONS_00053571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MEYTGSGYSGDEKNGRMQGRGAYQFPESVGTKYVGEMNDGKFHGEGTLYF
PNGAKYKGEWEHGKCIKGQYVFADGLKFDSDEWKYCNRNDRRFYTEICDG
LKPAGRSQLTNNEPPRTIPDGCYDCGDGFYNPKTRVVSTYNKKFLRNADD
DEHDWIVKHCRRGWDEHVGYIKGFHN
Run BLAST on NCBI

transcript from alignment at scaffold_233:707177..718530+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053571 ID=TCONS_00053571|Name=TCONS_00053571|organism=Clytia hemisphaerica|type=transcript|length=11354bp|location=Sequence derived from alignment at scaffold_233:707177..718530+ (Clytia hemisphaerica)
TTTTGCTGAAGCGGGTGTTGTgttcatgttttttttgttacatttttgtt
tataaagcAAAACCTTGTTGGCAAAAGTTGAGGTATAGAAATTTAACTTT
CTCTCTATAGATTATCATTAATTGTCCAAATTTTCATTAATCTACATTTT
TTACATTAAGATATATgcaattcttattttttctactttaagtcagtgca
cgaacggccccagtgcacaaactagcctggatatccagcccgtaaacttt
tttttgattctgatatttcttatgtttacggtctggtttacctagatcgt
ctgcattttcatctgaggatgattatgcggatattctgattggttggtcc
aagcgaatcagagatctgaatggtggcgcgcgtataagaaattatgcaag
ccgacttgaagtgttcgcctaaatatttaggtggactgcgcggaacataa
gcgtgcaattgagaagATTTCCCAGACTGACGCTAGAGGGGGgtgcccag
tgcacgaacggcaaaCTTATTTTCGTATggaaccttttttatatcaacta
ctgaactggtgatatgtttctattgattttgaattaatgagcTAACATCC
TTCAATGACATTTTGTGTGATGGAAGATAACAGGTTTTTACTGTAAAAGA
GGAGagtcattttcagaactcttTTTGCGCAAATGTTCTTATCCAGGCGT
ACCCAATCGATGAAATCGCTACAGGAAATCAATCgatattaaaaatcaat
tttaatcgataataatcgatagtgatcgataactaatcgataaacaatcg
atagCCAATCGATACTAAGACTTTACGTTCTTATTGATTGGATTGGATTG
TTATCGATTGCTATCGATTAATCCCTGATTGCTTTTGATTGTtatcgatt
aatatcgatttCTTTATATTCGCTATAAACGCAACCCTAccgtggttttt
ctaatttaacgcgtggcaataaataattattttcgacGCTACGCGTGAAA
AACTAGAGAACAATTAATTACGATATTCAAGTGTTTTAAGTACGCGTTAA
AGGCTTGTGTAATAATATATATTACATATAGATTGTATAATGTATTAACA
GGCATTAGCTGATTTGGAGGAGCCAGAGGAGGATGACGAAGATCGCTTta
atttgtgtttttgaaagaaagaagtttatcaaaaataaaactttcctGTC
TAAATTTTCTTGTCCAAGGCTTGATCACAATAATTAGAGTGAAattaatt
atgcagaattttggctACGTGTTAATAATTAGAGTAAGATTAATTACGAT
TATTTGCCAAAAACAGGGTACGCGAATAAATTAGACTACGtgttaaatta
gaaaaaccacggTACATGGTATTTGGCCATTCCTATTCCCCTGTGCATTA
ATGCGATTAATACAGTGATTTGTTTGTGTGATTTTACCCAAGCCCTGGTC
GCTAAGAGGGTTTGAATTGTGGGAAATACGGCCATTGAGATAGTTATTCG
GTTGGTGGATAGTCGTTCACCGACCGGTGGAAAATTGGTCGTCAGAATAG
TCATCCGGCCGTCAAAATACTTTATTGCATGAAAATTTTGCGGTTTCGCG
GTCGAGTTCAGAAAACGGCCAAATTAAAATGCCGCGAAAAACGATTTTTG
AGCTCAACCGTGAAATTAAAATGCCgggaaatgtgattttttgggtcAAC
TGAAAAAAAACCCTAGAAGTAGagtcttttttgcaaaaaaatgcaataat
CAAGATAAAATTCTCTcaactgcgaaattaaattcccgcgaaacttcaga
attttgagctgtgaaccgcgaaaatttcttcccgcaaaaatttcttccct
taaagtacGCTACGATATTATCGTGAGATACACTGTGGTACACAGAGTAG
CGATCGTACATACAGAAAATTAGCACAATCGATCGCAATCGATCTtaatc
gataacaatcgaatTCAATCGATGGCTAATCGATCGCAATCAATCTTAAT
CGATACCAAtcgataataaaattttacattACATACGATTGACATCGATT
AAATCGACAATCGATGTTATCGATTGGGTACGCCTcgtcttataaaaata
tttcctcTCGCGATCagccatgtttacaaaaatcctgaatttcgtgattt
ttttacttggcctcgtTCAAAATCGGTTTGGTTTTGTTCTAGTGCtctgt
ttattttaatttttggagagattgcaagggatagtttgaggattctgctg
cacaaaggaagCTCCATagaagtttgtttgtttgtttttggttgtttgtt
tcaagttcaaagacgctcgttcgtgcactgcggccgttcgtgcactggtg
aTATGACTCTAGGtcctttttgattttgaagaccccccaaaaatcacgaa
ttttcagggcttacaattttgcctaaaaacggaAAAATTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTCACATT
CTTTCTTAGAGAAGTCATCTGTTACACTGAAATTTTGTTCGTTTAGTTTA
TGGACTGAGGCCATAATTCTTTTCTTGTCTTCCTCATTGCCCAACTTTCA
ATGGCCGCCATCTTTTCGTCTTGAACATATCATCCTTTCGAGCACCAATT
CGTTCTGCAGTGACAACGTTTATCTTTAATCCCATACGATTTCCTACAAC
CTCCTCCACGTAATCTTTGTCACCGGCCAGCTGTTCCTCTTTATTCTCAT
CTTTATTTTCACCTAAATGATGGACAATGATGTTACATCTAGTTAAGTTC
TTCCAGCGATCTTgttctctttcttctttttcatttttgataaatttctt
aaTGATAACCTCTTGTTTCTTCACCTCTTCCTTCGTGATATCTGCATATG
TTACCCGTTTTGGTTCTTTAACGacgtctgttttgtttatagcTATAAGT
TCCTCCATTTTCTTCTCTAGATTATGCAATCTAGTGTTGAAAACAGATTC
AAATATTTGCTGTCCTCCATTTTGTCTTGACATTCTGCTTTCTTTATTGT
TTGCGTTATTTGGTTACTTCTGACTCTTTGcttacttgttttgatttttt
ccaaaagtatTGGTAACACATTTTTCAAGCCTtacggaccatttttgaac
tttcggatcctcagatcctaagctcctaagtcttaagtctagcattaaaa
ctctacctttGCAACCTaaaggccgctacccactcagcattttatggttg
GCGAACAAGGTGCACAGCTCGGGCGCTTTGGTCGCTGAACGCATTTCCCA
TTCCTCTGATCCAAAATAAAGGGGAGATATGCTgctcattttttcttttt
tctattgttgatATCTTTTTGCACACGGTACAAGAGAGTTAAATttctct
tctgattggctatttaaaaaagaacaataaagaAGCCTCACAGCctagca
aaaaaaagttttaactcttgttgcgctcaaggcgacagcctttgaaggct
tgatttatgtaatttatgcaatgccttgttcgacgaccataaaatgctga
gtgggtagcgacCTTAATTTGGAGCACTTACAAATCATTTGTGGTTTCGA
AATTTCGTGgggaatttcctttttgtgccaagtattttggaacTGATTGT
AGCTATAATTTGTTTTCCAAGAATTGTGGAACGGTTAAAAtttagtaaaa
taaaaaaaaagattaagtaAAAATGAACaaagtgaaacaaaaaagaGCAA
AAACACAAAAAGCATATAGTAGAATAATTGTGagatataataaaaaataa
gacaagAAAACCAAATAAAAAGTGGGGCGTTTGTCACCAAATTGTCTTAA
AACTGACTTTTGTCTGccttctttgaaaattctgtttttccccatgagtt
tttcaaatattaataGTTTGAATTCATAAGGGACAGTTATTTCCTCTAGT
GGATGAGAAATGGTGCTTTACTAGTAAAATATATTCCTGAATATCAGATC
TGCAGAgcaaaaaatgtgttttgatCAAAActctttttctattattttcc
tTAAGACGGAGGATAGAAGTTTGTTTTAGTACAAAGACGTTTTGATGCTA
CTTCAAACTNATATCAGATCTGCAGAgcaaaaaatgtgttttgatCAAAA
ctctttttctattattttcctTAAGACGGAGGATAGAAGTTTGTTTTAGT
ACAAAGACGTTTTGATGTTACTTCAAACTGAATTTCTTTATCTGGAAGTT
TAGGTGGAATCATAAATATGCCAAATTAAACCGTACAAAACGTGCATATA
GATTTTGCTTGCTTGCCCTCCGTGCCCTCAAAAGTGATTGAAATGTATTA
CTCTTTTGTTAATTAACTATGGTAAAAGCATCTTGGGACTGTAACAAACT
GAGAATAGTGTCTCATTGAAGCAAATAAAAAAACTCTGTATGCAACGCTA
AGATTTAACTATTATAAAAAGTACAAACGAGTTAAGGCTTGGAGAAACGA
GAAGTTTTTtccgcgttggtgcaatgcaacatatTCCATCCCACctacac
aagaaaaaaagtgcgtgtctcatggtttctttttttgtttcatgggaaaA
AAGTGAgtgaaatacccaaaagacacgccgattttgtccctgggacaatg
gagcaaaaacgagagaagcacaaatgttattgaaagaaaaatgagcgttt
caggttggtgggatggagaaAAACTTTTCGTGAAAAAaccttctcgtgtc
cccaagtcTAACGTGACCACAAGTCTGTTGGAAATGTTAATAATGTTACA
TACGGTAAAGAAGTGGGAAAAGTTAAAGTTCACATGAAAATAAGGCTGGG
aaagcaaattaaaaaaattctaccgNGTCTGTTGGAAATGTTAATAATGT
TACATACGGTAAAGAAGTGGGAAAAGTTAAAGTTCACATGAAAATAAGGC
TGGGAAAGCAAATTAAAACATTTctaccaaaaattaaaaataagataaat
tatACAGTGACTGAGTATATATTCTGAAATGGTTCGAATATAGATTTTAC
CCAAGGAGATTTTCAGTAACTTCTGTTTCCTAAGATAGCGAATGTTGTCC
TTTGATTGAGGGTTTTTTTTCTGTTCATTTCCCTCCTGTATTTTTACTTA
GATATCATTAAGAaaacaatgaaagaaaaataaccTACACTGTAGCAATG
GAGTACACGGGCAGTGGATATTCTGGAGATGAGAAAAATGGAAGGTAAAT
CTTAATTTATCCATCTTATAAatctttataaatctatttcCAAATTTCGA
AGTACATTACGTCAAGTATCATGCCTTACGACAACCATTAGACGTTCAAA
ATAAACAACATTTTATACACCTTTATGAAGAACGTTGCATGTTTTTAGGA
TGCTTTTAAAGACATTTTCTCATATAACAACCAAAAAACTTagttaattt
atttttcttctgatttttgtTAACTCAACGGATTTTCCATCGATGTTTCA
TCGATGAGAATGATTGACTTTGTGAGGAAAACATTTTATCGTTTATCCTA
TTTTGCAGGATGCAAGGGCGAGGTGCTTATCAATTTCCAGAATCGGTTGG
AACGAAATATGTTGGTGAAATGAATGATGGAAAGTAGGTTTTTGCTACTT
AGTTGTGTGTAGTATTTCTTCAATTGTAGTTTGCTTGTTTATTCCAATTA
TAAACACTATGATCACTTATTCTGATTCAATAAACCTTATCGGAGAAAAT
AAAATTGGGATTTATTTTAAATCTGGCAATTTTTGGAGATTCTGTCAACT
TTTTTAGGCCGTCCCTTATCTGTCATTGCGAAATTTTTGTGCTCATGCTA
ATCAGGGCCGTGCTTAACATGAAAATGATGGCTTCATCGCCAGCCCTGGC
TACAACATGGTaccttaaaaaagccttaggTCAGGGGCCCGTACTCATAC
TCAGCTAGGACTCATCCAAATTTATTCATCCCTTACTGGTGGATGAATTC
TGATAGTGCTTATTTCTCAACTATAGGGGGCACCTAATATATTAGGGTTA
CCtaatggcgttctaaatctgcAGGCCTGGCAGgcatgcaacgacttcaa
aaaatTCAGCCCCCAACAAAATCGAAGTCGCTACACGCTTGCTAGACCTG
AAGATTTACAACACTATGGGTCACCTTAATCCCTAAGGGGAGGGTTAGAA
CAGTCTAGGTAATTTTGCATGTAGGCTTATAGTTTTGGGTATTATGAAAA
TGATGGATGATTTTTTTGACATCGCTTTTATattagaaattgaaatttta
tggACCTTTTAACATTAGCATCGGTCTTTAATCTTCCGTGTCCAAAATAA
CGCCAATTATTGTTAGGGTCAGTTAGGGTAGTAGAAAAAGTTATATATGA
ATAAAAGCCGGGCGAAAATTAAAAGTCATTGCCCCAAGGAATTAGTCACC
CATTCCTATTTTCTCCACTGTAAGGTATGGTAAACTGAATTCTCCATTCG
ATTCGTCGTTGactttcatcttctttttttatagatttcaCGGGGAAGGA
ACACTGTATTTTCCAAATGGAGCTAAATATAAAGGCGAATGGGAGCATGG
GAAATGTATCAAGGTAAATTTCTTTAGTTGTGCTCCTCGATCTATACTGT
CCAAAGTTCTATCTATGAAAATTATCTTTANAATTTCTTTAGTTGTGCTC
GTCGATCTACACCGTCCAAACTTCTATCTATGAattatctatttttcttt
atgtATTGTATTTTGTAGGGCCAGTATGTTTTTGCTGATggattgaaatt
tgattctgATGAATGGAAGTATTGCAACCGAAACGATAGAAGGTTTTATA
CTGAAATTTGTGATGGCCTTAAACCTGCTGGTATGACTTTTATTGATCGT
GATAGTTCACGGCGATCTTTCATTTGATTAATCGGATTTAAAAATCcttg
ttttagtcaaattttaagcaattgaggacgggatagagggatctctcgaa
aacgaaagtgctcaATAACTGGTCAACagtttgatgtatcaaaaaacttt
ttttcctactcTTACACTGCCTATAAGGAGACTTAATACAGGGTGGCCAC
TAGTCCTGGAAAGTCCTTGAAAGTCCTGGATTTTGTTTTAGTCCTGGAAA
AGTCCTGGAATATTTTTCCTTGTTAGTCCTGGAATTTAACCTTTCTCTAT
AAGCGAACAAGCGTGAGGGAATTTGTATTCTGATCAGATATTTATTGCTT
TTATTTTCTGTATTCTAATATCTGTGTTTGCAGAAGTcataaatattgtc
aaaatcgtCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CACCCATTGAAGTTTTTCAGAATATCACGTCCTATCTTCGAAAATATTAT
CTTGTTGCGTTTCAAAGAGATAATCCTATgtttctgtttctaaaaaagtg
attttcCAATTGTTGATGAAAACGATGATGCACCACTAAAATTgtttaaa
ggggaattaacgtttgGATTTAaccctgaaattttttttcgaaacatgaa
agaggaagaaaaatgtgatcgaacaaaaaaagaaccacatcaaaatgtct
tttattcattgagttatttaatctttaatttctcacaattttgactctac
aatggagaaaaactccccctctgtgtattttgtgacgtaaagtGCGCCCA
ACTATTCTCACTGTTACACTCTATTTGGTTGTAAAAGAGATATAAAACGT
TAGAAATGAATCTTTTTAGAGTAATTATAGCAAAACGTTGTGTTGAAGAC
ATAAAACTAGGAGAATGTAGTTAGTATTCCAAAGGTGCAGTAAATTCTCT
AAAGGTAAAAATAAACGCAAAAACTGCATTTTAAATCATCATTCACCACT
CttcccttataaaaaagagaaacacagtTCGCACCCTACGTCATATTTTT
CGTATCCATAGCAACACAAGGGAATTTTCAAACAACTCTTATTCCGGATG
TAGAAGAGTAAAGTCCTATAaaccatatatatttgaaattgtctcaatga
gctctatttgaatctgtcatttgtttgttgacaaatttgaaacgttaatt
ccccttAAAATTGGCTTTTTCGGGGGGAGAAAGGGAAAGGGGCgccaaaa
cttttttgttaaatCTTATTAAAAGTTGGACTTTGTGCGTCTTAAACTGC
GCCCTGAAATCAATTTTggtgaaataatttttcaaatttttcatgttCGC
TTTGCTCGCAATaagattttggtaattttttgaaatctagtcatgcaatt
ttttttgacaatctAGCAGTTTCGAATGGTAATCTAACTGTGCGCCTCAT
GACCAATTAGCTGAATGCAATTTAAAACATATAacccaatttttttcgct
cgaaaAGTAATCCGTATTGGttactttaaaaacaaaaatacaagaGTAAT
GTACGGTTAACTCTCACTTTACAAAATCTTTGTCACCTAAAAATATCCTC
AACAAGTAAGACAATTTGTAAGATTCTTTTTAAAGCTATGTGATTGTCTA
TGCAAATCTTCTTTattggcccagctagctttagcgtaGTGGGCCTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNtcttgttcagttcatatttatattcgctgg
gccttcgtgccctctgggcttcttgtcTTCTTGGTTAAAATCAAATTGGC
CCATTCTCTATTTCGTTGCTTTAGAGCAGGTTAGAAAAAGCTTTGCACCT
CATTTTTACGTTAATACTTTTTACATACATAGCTCAGTTCCGAGAgaaaa
tgcttttcttttagGATAAAAAGTCCtggaaaagtttaaaaacatccTGG
AAAAGTCCTTGAAAAGTCCTGGAATTTGACTTGTTTTTTTGAGTGGCCAC
CCTGTAAtatacaaaatttcatttctttatgagcactacttaaggagata
caaagcaaattagccaaaataatcccaattttacaaaagttccaatgaaa
gatcactgtgGTTCAGACTCTGATTTAGAAGTAAGGCtaagtttttaaaa
gaatatgCTATTGTCCACGAAactgtttttttcaaaatcactaCTTATTG
CCTGATTTTCTTTCTGTAGGCCGGTCACAACTAACAAACAACGAGCCGCC
ACGAACCATTCCTGATGGATGTTATGATTGTGGTGATGGTTTTTATAACC
CAAAAACtagagtggtttccacatacAACAAAAAGTTCTTGCGTAACGCA
GGTATTGTTTTATTCATATCTTAttagataaaaaaatgtaagGCGAGGCC
CGACCAATTACGTTCTTTTTTGTTACTCAAAGTATGGTTAATCGGtcaaa
aattaaagggaaggATAGATCTCAATCATGAAACATCAGTAATTTATTGG
TCATGCATACTAAGACATGGCCAATTGATACCTTACGGGAACTGGTTTTG
GCAAGAACTTTTTTTTGcaagcagcaaaaataaattaaaaattaaattaa
cgAGGAACTTATTTCGGCCAGGCAGTATTTCCATAAGAcaggcgagaact
aatttttgcaaatAGCAGGGTAAGttggttttaaaaaaatcatggcagca
gttttttaattttggcgagaactaattcgTTAATTCCAGAACTTGAGCAC
AAAAGTTTCttaaaaacttggaaaacaacCATATTTTTAGAATGGCTGTC
GGTAACAATGAAAAGCAAAATGGGCTGTCTTATCTTACGGCAAGACCAAA
TCAATTCGTTTTTTTAATGAGCCATGACACTCAAAAATTGGAATGGTCGG
TTACCAATTCTTAATTTAGCAGTGCTAGTAAATTTAGCTTTGGTCAATAT
CACTTTGTTACTAGGtgacagtgtggatctaaaccacactgaaacgaccg
ccttccatcacgcatcacacTTGCGAAAGAGCgtgcgcacattattaacg
cctacatgtcatccccagtacattttagattattcattgaaaacagatta
caattatagtcatttttcatgtctcgattattcaattccgaataaaagac
attcagggaaaaaaaagagaaacacctgggtaatctagctaaaaaaaccg
aaagtaaatggtagacaaagtaatgagccgaggcaaaacgagattagcgt
accactatgaaagaaaccgcctccggcggtcgataagcTGATGAATATtt
atataaatattaaaaaccACATAATATATGTCATTCTATTGAACCTCCTA
AGTAGATAGGTGCATTTGAATTTAGAATTTATTATGTGTACATTATATGG
TGTTTTTTTTACAGATGATGACGAACATGATTGGATAGTGAAGCATTGTA
GGCGTGGTTGGGATGAACACGTGGGTTACATTAAAGGTTTTCATAATTAG
TTTCTTCTTTCACattctaattttattttaatactCATCCTTTGTGTGAT
ATTGTATATAATGcctttattttgttaaaaaatatctCGCTTTTACCTTC
AAACCTTTTCTTCATTCTTGTATTTCCGAAAAATTAACTAAAGATACATc
aaatttttactgtcagacttgtAGTTTATCCAGCTAAAGTAAGACCCTCG
TtgtgcactctatcaaaagtacatccATATGAGTCTTCCCCCGGGTAAAT
TACTAAAAAGATATTATACTTAGATTTATTTTGGAGTAGTGTTTTTATTC
TATG

Coding sequence (CDS) from alignment at scaffold_233:707177..718530+

>TCONS_00053571 ID=TCONS_00053571|Name=TCONS_00053571|organism=Clytia hemisphaerica|type=CDS|length=3186bp|location=Sequence derived from alignment at scaffold_233:707177..718530+ (Clytia hemisphaerica)
ATGGAGTACACGGGCAGTGGATATTCTGGAGATGAGAAAAATGGAAGGAT
GCAAGGGCGAGGTGCTTATCAATTTCCAGAATCGGTTGGAACGAAATATG
TTGGTGAAATGAATGATGGAAAatttcaCGGGGAAGGAACACTGTATTTT
CCAAATGGAGCTAAATATAAAGGCGAATGGGAGCATGGGAAATGTATCAA
GGGCCAGTATGTTTTTGCTGATggattgaaatttgattctgATGAATGGA
AGTATTGCAACCGAAACGATAGAAGGTTTTATACTGAAATTTGTGATGGC
CTTAAACCTGCTGGCCGGTCACAACTAACAAACAACGAGCCGCCACGAAC
CATTCCTGATGGATGTTATGATTGTGGTGATGGTTTTTATAACCCAAAAA
CtagagtggtttccacatacAACAAAAAGTTCTTGCGTAACGCAGATGAT
GACGAACATGATTGGATAGTGAAGCATTGTAGGCGTGGTTGGGATGAACA
CGTGGGTTACATTAAAGGTTTTCATAATTAGATGGAGTACACGGGCAGTG
GATATTCTGGAGATGAGAAAAATGGAAGGATGCAAGGGCGAGGTGCTTAT
CAATTTCCAGAATCGGTTGGAACGAAATATGTTGGTGAAATGAATGATGG
AAAatttcaCGGGGAAGGAACACTGTATTTTCCAAATGGAGCTAAATATA
AAGGCGAATGGGAGCATGGGAAATGTATCAAGGGCCAGTATGTTTTTGCT
GATggattgaaatttgattctgATGAATGGAAGTATTGCAACCGAAACGA
TAGAAGGTTTTATACTGAAATTTGTGATGGCCTTAAACCTGCTGGCCGGT
CACAACTAACAAACAACGAGCCGCCACGAACCATTCCTGATGGATGTTAT
GATTGTGGTGATGGTTTTTATAACCCAAAAACtagagtggtttccacata
cAACAAAAAGTTCTTGCGTAACGCAGATGATGACGAACATGATTGGATAG
TGAAGCATTGTAGGCGTGGTTGGGATGAACACGTGGGTTACATTAAAGGT
TTTCATAATTAGATGGAGTACACGGGCAGTGGATATTCTGGAGATGAGAA
AAATGGAAGGATGCAAGGGCGAGGTGCTTATCAATTTCCAGAATCGGTTG
GAACGAAATATGTTGGTGAAATGAATGATGGAAAatttcaCGGGGAAGGA
ACACTGTATTTTCCAAATGGAGCTAAATATAAAGGCGAATGGGAGCATGG
GAAATGTATCAAGGGCCAGTATGTTTTTGCTGATggattgaaatttgatt
ctgATGAATGGAAGTATTGCAACCGAAACGATAGAAGGTTTTATACTGAA
ATTTGTGATGGCCTTAAACCTGCTGGCCGGTCACAACTAACAAACAACGA
GCCGCCACGAACCATTCCTGATGGATGTTATGATTGTGGTGATGGTTTTT
ATAACCCAAAAACtagagtggtttccacatacAACAAAAAGTTCTTGCGT
AACGCAGATGATGACGAACATGATTGGATAGTGAAGCATTGTAGGCGTGG
TTGGGATGAACACGTGGGTTACATTAAAGGTTTTCATAATTAGATGGAGT
ACACGGGCAGTGGATATTCTGGAGATGAGAAAAATGGAAGGATGCAAGGG
CGAGGTGCTTATCAATTTCCAGAATCGGTTGGAACGAAATATGTTGGTGA
AATGAATGATGGAAAatttcaCGGGGAAGGAACACTGTATTTTCCAAATG
GAGCTAAATATAAAGGCGAATGGGAGCATGGGAAATGTATCAAGGGCCAG
TATGTTTTTGCTGATggattgaaatttgattctgATGAATGGAAGTATTG
CAACCGAAACGATAGAAGGTTTTATACTGAAATTTGTGATGGCCTTAAAC
CTGCTGGCCGGTCACAACTAACAAACAACGAGCCGCCACGAACCATTCCT
GATGGATGTTATGATTGTGGTGATGGTTTTTATAACCCAAAAACtagagt
ggtttccacatacAACAAAAAGTTCTTGCGTAACGCAGATGATGACGAAC
ATGATTGGATAGTGAAGCATTGTAGGCGTGGTTGGGATGAACACGTGGGT
TACATTAAAGGTTTTCATAATTAGATGGAGTACACGGGCAGTGGATATTC
TGGAGATGAGAAAAATGGAAGGATGCAAGGGCGAGGTGCTTATCAATTTC
CAGAATCGGTTGGAACGAAATATGTTGGTGAAATGAATGATGGAAAattt
caCGGGGAAGGAACACTGTATTTTCCAAATGGAGCTAAATATAAAGGCGA
ATGGGAGCATGGGAAATGTATCAAGGGCCAGTATGTTTTTGCTGATggat
tgaaatttgattctgATGAATGGAAGTATTGCAACCGAAACGATAGAAGG
TTTTATACTGAAATTTGTGATGGCCTTAAACCTGCTGGCCGGTCACAACT
AACAAACAACGAGCCGCCACGAACCATTCCTGATGGATGTTATGATTGTG
GTGATGGTTTTTATAACCCAAAAACtagagtggtttccacatacAACAAA
AAGTTCTTGCGTAACGCAGATGATGACGAACATGATTGGATAGTGAAGCA
TTGTAGGCGTGGTTGGGATGAACACGTGGGTTACATTAAAGGTTTTCATA
ATTAGATGGAGTACACGGGCAGTGGATATTCTGGAGATGAGAAAAATGGA
AGGATGCAAGGGCGAGGTGCTTATCAATTTCCAGAATCGGTTGGAACGAA
ATATGTTGGTGAAATGAATGATGGAAAatttcaCGGGGAAGGAACACTGT
ATTTTCCAAATGGAGCTAAATATAAAGGCGAATGGGAGCATGGGAAATGT
ATCAAGGGCCAGTATGTTTTTGCTGATggattgaaatttgattctgATGA
ATGGAAGTATTGCAACCGAAACGATAGAAGGTTTTATACTGAAATTTGTG
ATGGCCTTAAACCTGCTGGCCGGTCACAACTAACAAACAACGAGCCGCCA
CGAACCATTCCTGATGGATGTTATGATTGTGGTGATGGTTTTTATAACCC
AAAAACtagagtggtttccacatacAACAAAAAGTTCTTGCGTAACGCAG
ATGATGACGAACATGATTGGATAGTGAAGCATTGTAGGCGTGGTTGGGAT
GAACACGTGGGTTACATTAAAGGTTTTCATAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033809XLOC_033809Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053571-proteinTCONS_00053571-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053571-exon-scaffold_233-1491911889:707177..707258TCONS_00053571-exon-scaffold_233-1491911889:707177..707258Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1510915933:707177..707258TCONS_00053571-exon-scaffold_233-1510915933:707177..707258Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1575043694:707177..707258TCONS_00053571-exon-scaffold_233-1575043694:707177..707258Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1491911889:712528..712620TCONS_00053571-exon-scaffold_233-1491911889:712528..712620Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1510915933:712528..712620TCONS_00053571-exon-scaffold_233-1510915933:712528..712620Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1575043694:712528..712620TCONS_00053571-exon-scaffold_233-1575043694:712528..712620Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1491911889:712935..713009TCONS_00053571-exon-scaffold_233-1491911889:712935..713009Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1510915933:712935..713009TCONS_00053571-exon-scaffold_233-1510915933:712935..713009Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1575043694:712935..713009TCONS_00053571-exon-scaffold_233-1575043694:712935..713009Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1491911889:713911..713989TCONS_00053571-exon-scaffold_233-1491911889:713911..713989Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1510915933:713911..713989TCONS_00053571-exon-scaffold_233-1510915933:713911..713989Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1575043694:713911..713989TCONS_00053571-exon-scaffold_233-1575043694:713911..713989Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1491911889:714145..714256TCONS_00053571-exon-scaffold_233-1491911889:714145..714256Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1510915933:714145..714256TCONS_00053571-exon-scaffold_233-1510915933:714145..714256Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1575043694:714145..714256TCONS_00053571-exon-scaffold_233-1575043694:714145..714256Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1491911889:716946..717077TCONS_00053571-exon-scaffold_233-1491911889:716946..717077Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1510915933:716946..717077TCONS_00053571-exon-scaffold_233-1510915933:716946..717077Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1575043694:716946..717077TCONS_00053571-exon-scaffold_233-1575043694:716946..717077Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1491911889:718141..718530TCONS_00053571-exon-scaffold_233-1491911889:718141..718530Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1510915933:718141..718530TCONS_00053571-exon-scaffold_233-1510915933:718141..718530Clytia hemisphaericaexon
TCONS_00053571-exon-scaffold_233-1575043694:718141..718530TCONS_00053571-exon-scaffold_233-1575043694:718141..718530Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:707177..718530 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
91.4234	90.2993	175.063	209.008	143.975	118.785	61.885	65.2984	45.9152	47.3945	48.7671	49.7629	8.44919	9.48953	17.2332	17.2036	20.1337	21.8673	17.0562	16.3302	17.3784	16.9754	33.1791	26.7312	126.7	98.9648	49.4858	46.3401	12.2728	13.6215
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003409MORN
Blast
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BLAST of TCONS_00053571 vs. Swiss-Prot (Human)
Match: MORN5 (MORN repeat-containing protein 5 OS=Homo sapiens GN=MORN5 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 6.870e-70
Identity = 103/163 (63.19%), Postives = 121/163 (74.23%), Query Frame = 3 
Query:  129 MEYTGSGYSGDEKNGRMQGRGAYQFPESVGTKYVGEMNDGKFHGEGTLYFPNGAKYKGEWEHGKCIKGQYVFADGLKFDSDEWKYCNRNDRRFYTEICDGLKPAGRSQLTNNEPPRTIPDGCYDCGDGFYNPKTRVVSTYNKKFLRNADDDEHDWIVKHCRRG 617
            MEYTGS Y G+  +GRM+G+  Y  P    T YVGEM DG FHGEGTLYFP+G++Y   WE+G  IKG Y F+DGL +D   W YC+  DRRFYTEI +GLKPAG +QLTN +PPR IP G YDCGDGFYNP TRVV  Y  +FLRNADDDEH+WI + CR+G
Sbjct:    1 MEYTGSKYIGEYVDGRMEGKAKYILPTE--TIYVGEMKDGMFHGEGTLYFPSGSQYDAIWENGLAIKGTYTFSDGLHYDEKNWHYCDGYDRRFYTEILNGLKPAGMAQLTNMDPPRKIPKGYYDCGDGFYNPVTRVVKDYRNRFLRNADDDEHEWITRTCRKG 161
The following BLAST results are available for this feature:
BLAST of TCONS_00053571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MORN56.870e-7063.19MORN repeat-containing protein 5 OS=Homo sapiens G... [more]
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