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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053583 ID=TCONS_00053583|Name=TCONS_00053583|organism=Clytia hemisphaerica|type=transcript|length=3922bpRun BLAST on NCBI transcript from alignment at scaffold_233:827368..860512+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053583 ID=TCONS_00053583|Name=TCONS_00053583|organism=Clytia hemisphaerica|type=transcript|length=33145bp|location=Sequence derived from alignment at scaffold_233:827368..860512+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053583 vs. Swiss-Prot (Human)
Match: APAF (Apoptotic protease-activating factor 1 OS=Homo sapiens GN=APAF1 PE=1 SV=2) HSP 1 Score: 483.797 bits (1244), Expect = 7.222e-159 Identity = 331/1076 (30.76%), Postives = 557/1076 (51.77%), Query Frame = 2
Query: 83 MNEEQRFILISNRKAISQDLLVGDVFSYFQSKFVLDIDEVELIKGELTSREKAEKLVETLLSKKRNFFRHFYKSLKFAEYYHLCELLXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKVETILRNGGVPQIPQIFVDRQQCIQQIQDALNALEDDIGWVVFHGMAGSGKTLLASDGLNNEPLVHRCFPGGIFWVNVGKVDNARLLMKMQNLCHWLDNDGLY--RTPKNVEEARDRLRILFSLEHPKSLLVLDDVWSDNVLKYFDVRCRTLLITRNPAIANTLSGNIINVQIKETLTFSQSQQVLALWTNMEIKDLPEESNSIINQCKGSPLAISMIGALLKGHKNRWSYYVKQLDEQKISKVKSKLSYDYTSLYDAFAVSFNDLSDELQEHFEKLSIFNESIGIPVETLSILWDCDEVETEDMMDELIGRSLVTSNTSNEDDEKKTCYFVHDIQLGFXXXXXXXXXXXXGFHQLLI---ERYLERHGDFKDIPDDGYIHWYLISHLIMADDVTTAVQLMKDLFWLQRCLDFTSPVSLITQF---NSLLDAMSSS-STNYQESVELLSDIRRLIGAHSHLFASEDDKMNFTQLALIQPSSNQVFKIALESGKTKLKEKSDS--VFYQWLNRPKEIQDDLTLSIKVHVDQV-NCCRLDHSKENPTVVSCGSDHLVKVWDSVNGKILSTLEGHSDSVNCCCFSSDDKRIITASSDCTIRTWSLMNETELKCLRGHRSDVLCCQCSNDDQ--FLCSASVDSTVKIWDMETGFLVCSFDEHEDVVNWCCFSHDSKMVASCSNDQSLKIWDIESRECQTQWCDEDF--------------IAFCIFTPDDEQVLYTIGDQIKIFNLSDEMVEKTIETP--SDVLSLAFSPDQQYLASAHTDMSARLYDLENEVFVRVYTGHSSWLTSVCFCQSNRTLVTSSADGICNVWSLNTE-NYSTEKLIPVFDASFLDPEHPLIAACSNKNQVKMFRMI-GLAGESPAF-KMSISSCKISRNEKMLAVGLANGNIEVMEIKTVEDSPKISFHQSSTFEKHKKAIVKLEFTRSDELLM-SCDEEIITIWD 3208
M+ + R L+ +R+A+ +D+ + + S L I E E ++ E T +++A L++ +L K + + FY +L Y L LL G+ V SS S S V T+L GGVPQ P +FV R++ + IQ L+ L+ + GWV HGMAG GK++LA++ + + L+ CFPGG+ WV+VGK D + LLMK+QNLC LD D + R P N+EEA+DRLRIL +HP+SLL+LDDVW VLK FD +C+ LL TR+ ++ +++ G V ++ +L + ++L+L+ NM+ DLPE+++SII +CKGSPL +S+IGALL+ NRW YY+KQL ++ +++ SYDY +L +A ++S L +++++++ LSI + + +P + L ILWD + E ED++ E + +SL+ + + K Y++HD+Q+ F+ EK + + H+ +I +RY + H D D Y + +L H+ A LM L W++ + P LI +F +LD + S N+QE + L + HL + N QL L +P +++V++ A K + K++ D+ ++ +W+N+ K I + L ++ H D V + C S++ + SCG+D ++V+ + G+ L ++ H D V CC FS+DD+ I T S D ++ W+ M + H V CC +N L + S D +K+WD+ + H + VN C FS D K++ASCS D +LK+WD S + + F + C ++ D +++ ++I +F++ + I T S + FSP A + L++ ++ V GH SW+ V F + +TSS D +W S L D F + E ++A + ++ ++I G G+ + +S C +S + + +A G NG IE++E+ ++ + +HKK + ++FT ++ L+ S D+ I +W+
Sbjct: 1 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSY--------VRTVLCEGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNG----KSFRYYLHDLQVDFLTEKNCSQLQD--LHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSL----------NGHLLGRQPFP-NIVQLGLCEPETSEVYQQA----KLQAKQEVDNGMLYLEWINK-KNITNLSRLVVRPHTDAVYHAC---FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAV----DHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILEL--------VNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN 1031 HSP 2 Score: 98.2117 bits (243), Expect = 7.222e-159 Identity = 66/204 (32.35%), Postives = 99/204 (48.53%), Query Frame = 3
Query: 3315 HTETITKCLTFDNGKYLASTSYDGNFKIMNVETNLEVFGYENEENAMMSCTATLDNKMVAACSSNNQCKIWSFDEGQLLHTLE-ENDVIRTIQFSGDNKFIATGCDNGSVKIWNTKTGRL--------KTEMKDHTGWITDIKFDRKSHLVQTVSDNLKFFN-TKGDRLQTIPLIGHYLTAVLPSDDFTLCITVDNQGYLYVLQ 3896
H ET+ N + L S S+DG K+ N+ T + + + ++SC + D ++ S++ KIWSFD LH L N +R FS D+ +ATG DNG ++IWN G L + H GW+TD+ F ++ + +K++N G+ QT G L + S DF +TVDN G LY+LQ
Sbjct: 1043 HQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQ 1245 The following BLAST results are available for this feature:
BLAST of TCONS_00053583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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