TCONS_00053593 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053593
Unique NameTCONS_00053593
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053593 ID=TCONS_00053593|Name=TCONS_00053593|organism=Clytia hemisphaerica|type=transcript|length=1205bp
CATTACGTTACTGGCAATTGTTGCTGTTTGCAGCTGCACAGAGATTTTGG
TTCCAAAATGAcggataagaaaaatgaatgttGTTTATGCAAGGGACCTA
TTAAAAACAAATGCACTTTGAAATGCTCTCACAATTTTTGTAGGGCGTGT
ATCAAAAAGGTTATCAACCATCCTAATCAGGTTAAATGTCCCTATTGTCA
GCAAGATTCTGAATCATCAGATATTACACTTGAAAGTGGTGAAGATGCTT
CAATATTGTTTAATGTCAAACTAACAAACATACTTGGTAGCATTTACATA
CAATGTGATACCATTGGTTTAGCATCCTACCACTTTGGAACTCTGTCAAA
CCCTTATATATCATATGAGAGCCCTGAAAGTGACGAGTGGGAGCTAGATG
ATGGCTCtagaccctgtcagaagaaatattttgagcaCCATCATTATGAT
CAAGAATCTAGAACCTTCACTGGCAATATTGATTGGACACCAACAAAATT
CTACGGTGAAGCATTGTGGAAATACACAATGATCTTTTCAGAGGATTTTC
TCACTATTGAAAGTGGAAATGTGCAGGGTTTTAAAGAAGTCAACGGGCCA
CCTGATGGTGAATTGAATATCTTTGGTGAGGATCTAGTTTATGAAAGAGT
TTTATCAGCAGATTTTGATTCTGATGATGCCAATGAAGATTAAACAATGA
ACAGGGAAAATATAATATCTGGGTATTTTTGTAAAAAAACTTTCACTATT
GTAAAAAAGCATTATTTATCTATCAATAGAAACTTTATGATTTTGTAAAT
TAACTTTAATTCTCTAAATTATTATATGAACATCAAACTTTTTATATCAA
TTACTTTTCTATAAATTTTAAGATACAATATATAAAACGCTACAATAAAA
AATATCAAAAATGAAATTCTTCACTAGCTTCCTCTTTATTTTTTAGCGAT
GTCAAAGTGATTGTTACTGAAATGGTATCTATTTTTTTCTGTGTTTCATT
TCTATATCTAGTCTTTTCTAGGCTACGTCATATCTTCCTTCGTTTCGAGC
GTAAAACTCCTACTCTTCGGGCTATGAGCACTGCTCTTGTTTTGAATATT
GAAATTCTCCCGATAAATGGCATGCGCACTGAGGTTTTAATGAAACAATA
GAGAGTTTCGAAACCTAAGCCAATCAGCTGTGTTTTAAACATTCTTTTAT
TTAAA
Run BLAST on NCBI

protein sequence of TCONS_00053593-protein

>TCONS_00053593-protein ID=TCONS_00053593-protein|Name=TCONS_00053593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
HYVTGNCCCLQLHRDFGSKMTDKKNECCLCKGPIKNKCTLKCSHNFCRAC
IKKVINHPNQVKCPYCQQDSESSDITLESGEDASILFNVKLTNILGSIYI
QCDTIGLASYHFGTLSNPYISYESPESDEWELDDGSRPCQKKYFEHHHYD
QESRTFTGNIDWTPTKFYGEALWKYTMIFSEDFLTIESGNVQGFKEVNGP
PDGELNIFGEDLVYERVLSADFDSDDANED
Run BLAST on NCBI

transcript from alignment at scaffold_233:976251..984746+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053593 ID=TCONS_00053593|Name=TCONS_00053593|organism=Clytia hemisphaerica|type=transcript|length=8496bp|location=Sequence derived from alignment at scaffold_233:976251..984746+ (Clytia hemisphaerica)
CATTACGTTACTGGCAATTGTTGCTGTTTGCAGCTGCACAGAGATTTTGG
GTAAGATGGTTGcaagcattgagtttaaagcccgaagggctagagtagaa
tctctaacctttctcaggctagaaaaagtgaagccctAAAAAATGTGCCG
TATTTTTAAAGACAGATTGAATCTAATCtagcaatacacctttcccgtaa
ttcgtaaaactaatgcgcgcgcattattttgatgctctccactgtttggt
ctctggaggtaaacaaacccgtttttgcttGCGTTCCCTTAGCTTAGGgg
aagttggttttttgagcttttcttaagttctgtgtCGAACACAAaacccc
ctcaaattttagtatgttcaatctattcatgatattataccaccctgaaa
atattttgccaaaagaaggtcgctgtcaaaagttagaggctcaaatccca
ctttcccttttttcgaaatttagcggtaaattttccacagatttttggtt
ctagactggataaagtctatgtaaggctgaatgtacctcgaaacccatat
ttgatgtatttttataaattttaccagcttttttggcttttttcgacgaa
tcttctgccttttattgaaattcaatcctcctttatataacaaacggtca
attagacagctaattatcatttttaatgactgaaacgaaaatactgatgc
atcaggcgaaccctaaaaatatttttgtttccggtccaccgggtgacaAA
AAAAACACTCACCTTGCCGgccgcaaaaatttttttttttctaaatttcg
atcccaaaactcgattttttaaagcactcgtagaagttaaaatgatggtc
tttctttaccttaaatctgtagtaacttgacaccgctacaggctttggca
taagaaaaattcacgtgtgatcatcgcacgcctagattttgatttacagt
ggtctaggcgtgcgattattcaaatacttaattttcatcgtttatatttt
caattgtgttACAATATCTCTCAGAACTGgcactctctttcattttgaat
atttatcttcaattgccaaggctccaaactgtgattacgaagtgaacttt
tttgagaaaaaagtagagtgagagaaacatttccccaattttttaaatcc
tcactttgtgaatgtttctttttattttactcacaagtcagcatgattcc
ttttataaaaacaaagctgtttacttactgaaaagtccccactttgtgaa
tgtttctatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNTCTTTATAgcataaaaacaaagcttttctcATGCGAGTGCGCTTCT
CGTGCTAGCATAGAGAAGCTAAAACCTCAGGATAAGAGTAAGCAAACATG
ATAGCTATTTGTGTTTTTGGCTCTGTTTAACCGTTTAACACTCACACTCA
TAACTGATTACAATCTTCTGGTAtacaaagaacaaaaagtgtcaattcaa
aaaattaTCAGCTGAATGGGGGTAagaactcaaagcaatttctcaagggg
acctaactcgttgggggcaccatgcttcaatgggggcacctaaaaagtgg
gctgaaaccatgtttTATCCAGGGAAACGCTGTGGcagcaatgttttgct
ttagtgagattgaacattttgttgttttgatttgatcaggggaaatttct
gtacaaaccaaaatatggcttcgttggaataccggttgaaacacttgtgt
tttagggtacctttttgggagattttgggaaaaaaatagaaaattttgag
tataATCCTGGAGTTTTTTAGTTCCGtgccattcagggtcacttttcgca
aatttttaaaatgtatgTGCGTCGTCCGACGGGGGTATATAACGAAAATT
TTCTGGATTGGCCCAATTACTCCAccacattactttccctcagccaattA
AAATGTGATATAagttatcttgtctctaggtaactgctgtgaagtaatta
gttattcaaaagactgttgTGTTCGCCAAAACATCTATCNCTTTCTGGAT
TGGCCCAATTACTCCACCACATTAATTTCCCTCAGCCAATTAAAATGTGA
TATAagttatcttgtctctaggtaactgctgtgaagtaattagttattca
aaagactgttgTGTTCNCACACCATGTACATACACACATGATCTTTCATA
TTATTCTAATAATATCTTGATTTAAACTGATTTTTACAAGTatcaaagca
aattttcaagGACCATGAAGAAGACAAATATTGGAGTAGCAGCTGCCAGA
TGCAGGCTAAGAGGCTCACAAAAAGAGTTAAAAGGTCAAGGTCCCATGGT
ATATTTGATGAGAAGAGATGTACGTGTAGATGATAACTGGAGCCTTTTAC
GATGCCAAGAAGAAGCTCGTCCAGTCAGAGTTGTTCACGTAGTGGAGGAA
AGCCATCCCACTTATCGTTTAGCTTGGTTCTATGCTAAAGGTTTGGAAGA
TGTACAGAATGGtttgaaaaagcttaaaattccATTTGATACAGTACCTG
ATATCAAATCATtaaatgattattttgttgaaattgatccaTCAGGCATA
GTGGCTGATATGCACACCTTAAGGGAATTTGATCTCAAACCTGTTATTGA
TATGTGTAACAAGCAAAAATTACCACTTTGGGAGGTGGACAGCTACAATG
TCATTCCAGTATGGGAAACATCAGATAAACAAGAGTATGCAGCTAGGACC
ATAAGGTCtaagataaacaaaaaacttGATCAGTACCTTACTGATATTCC
TCCCACTTCTTCAAACACTCAAGATTTGAAGGGTTATGGTAAAGAGTTTA
ATGCCATAGAAATGCTTGAAGAAAGGTGGAAGCAATCAAATGAAATACAT
TTGAGATTCACTCCTGGTACTAATGCTGGTAGGGAAGCTCTTGAGGAATT
CTTGAGCTCTCTTGCTATTTATGACAAACTGAGGAATGACCCTTCAAAGG
ATGCCACTTCTAACCTGTCTCCTTGGTTTAGACATGGTCATTTGAGTAAA
CAAAGAGCTGCATATGCTGCACGAAAAAGCAAAGGTTCATCTGATGGATT
CATTGAGGAGCTTGTAGTGAGAGGTGAACTTTCTGAGAACTTTGCTTTTT
ACAACAAAGATTATGACAACTTAAATGGTGGTCCAGCTTTTGGAAAGAAA
ACTTTAGAGGATCACAGGAATGACAAACGACCTCACACTTATTCATATGA
GAAGTTTGAAAATGGTGCAACACATGATCAACTTTGGAATGCAGCTCAAA
AGCAGTTAGTGAAGGAAGGAAAAATGCACGGTTTTATGAGAATGTACTGG
GCAAAGAAAGTCTTAGAATGGACACAATCTCCTGAGCAAGCAATTGAATT
TGCTGTGCGACTGAACGATACTTATGGATTAGATGGCCGTGATCCGAGAG
GCTACAATGGAATCTTGTGGAGTATCACAGGTTTGCATGATCAAGGTTGG
AGAGAACGTCCCATTTTTGGTAAAGTGCGATACATGAACTATGATGGTTG
TAAAAGAAAGTTTGATATCCAATCCTACATCAAACAATATCTCAAGTAGT
TGTTTCTGAGTTTTATCTTTGAAGTATCAATTACTTCAATTGTTATATTC
ATATTTGTTATACGAACCATTTTATTTTGAACTTGACTTCTCGCCAACTT
GTTAATTTTAGTTCCTAAGGTTTTTAATGACTATCATATCAAAGAgataa
tttttacaaaatttcatctGCTTCGTTTTCTTGGAGTATGTCCTGTCGAG
GTGATCTTTTACATGTACCCGAACTAGAAAAAAATGCAAATCTCGACTTT
GTTATTTGGACAGGCCAGGACAGGCTGAATAAACAGGGCGACATTGGAGT
GGCGCTCTTATAGGTTCAGAACTATCAACCAGTAAAAAATCTAAGCGATC
ccacatttttttatttctatcaGATTTACTAAAGTTTTCACAGATGACCC
AAACTAATTCTCATACTTGGCTTTCTTgggatttcatatttttatctTCA
CACTaacaattttctaattttatttattttagttttgacaAAATCTTAAT
GATAAAATGGTTGACCAAAAGAATGAATGTGCAATCTGTTTAAGTCCCAT
TGATAGTAAATGTACCCTAAAATGTTCTCATAGTTTTTGTGAGTTGTGTA
TCAAAAGAATAATTAATCATTCTTCAAAAGTGAAATGTCCATACTGTCGA
CAAGACTCAGAGGGTTCTGAAATCACTCTTGAAAATGGAGAAAGTGGTGA
GTCACTCTTTGCACTTCCAACCTTAACAACCATAGCTGATGGAGTTTATG
TTCAAGGTGGTACCATTGGATTAGCATCCTatcattttggaaatctttcg
ACCCCATACATTTCCTATGAAAGTCCCCATTGTGATGAGTGGCCAAATTT
GGAGGATGGCTCCAGACCAGCTCCAaaaaagtattttgtgcaaCATCATT
ATGACCCTCAAACAAGAACATTTACAGGAAATATTGATTGGTCACCAACT
TATTGGCAAGGTGATGTGTTGTGGAAATACACCATGGAATTTTCAGAGGA
TTTCTGGAAAATTGAATCTGGAAATGTCAAACATTTCAGCGAGATCAATG
GTGCAGAACAAGGGGAAAGTTTGTTTGGTGTTTCATTGAAATATAAGAGA
TTGAAGCCAGGATATCTTGAGGAGGATGAAGAATAAATTGCAAACATTAT
ATTATTTTAACTTTTCATTATTGGTAATTTTGCCTTTATAATATTGTGAT
TGTTGAAGTTTGTGAGTCATTTTTTGCAAAGTTCCCTCATAGGAGAACCC
TTCGAAAATTGATTCTTTATAATGGTGATGAATAGCATTTATCTACAATG
TTTAAGTGCAACAAGTTTACAAttaattttctctttgaaaaagtCATTTT
CTACGAGTTAGATAGCTGCAGAGGGTGACAGGGGTTTATTAAATCATTTT
GCTTGCTTTAGCCTGGTGCTAATTCGTCAGAGTCTTATTATCTTTTAACT
CTATTATGTGTAAAATATTTATTaattataatttcttttggtttatttgt
aagaattcaatatatttttaatCTTAAATGAGGCCCCTCAAGTGGACCTT
TAATTCACACTATCACGGAAATTTATTTGGGAATTTGTGTATTCTCGCAA
ACTTTTCTTGAGTTTCACACAAATAcccaatttttctgaaaataataaag
tttCTCGGGAAAATCAGGGAAACGTTTGAAATCTGGAAATTTACGCATAA
TCAGCGGGAAAAGAGAAAATTTGCATTCAAAATAGTGCAGATTCAAGCAT
TCActcaatcaaaaagtggattttcatacattcacgcaaccaaaaaagtc
CATTCATGCTTTCACACAACCCGCTGGGGGGAGGGGGTAGCTTaaattat
ttttagatttttttaatggACGGACACACGTCATAGAATTCTTTCAGttc
tttcaattgtttttgtaGATAAGagtatgtttttaatttttatttgcaTC
CTATGACTACGtgaaactttttataaaaaaaacttgataaaatATACttg
ttacaaattttttttttgataaataaaaatatatatatgtgCAATTCCAT
TTTTAATCATTTGCGCTGGtgctaaaaaactttttagtaATCTTTTTCTT
AAAGATTATATACAACAGGTTAGATCTGGGAAAAATGTGATctatttcaa
ttgttttataggttttgactttttattcatatttcttTCAGTTCCAAAAT
GAcggataagaaaaatgaatgttGTTTATGCAAGGGACCTATTAAAAACA
AATGCACTTTGAAATGCTCTCACAATTTTTGTAGGGCGTGTATCAAAAAG
GTTATCAACCATCCTAATCAGGTTAAATGTCCCTATTGTCAGCAAGATTC
TGAATCATCAGATATTACACTTGAAAGTGGTGAAGATGCTTCAATATTGT
TTAATGTCAAACTAACAAACATACTTGGTAGCATTTACATACAATGTGAT
ACCATTGGTTTAGCATCCTACCACTTTGGAACTCTGTCAAACCCTTATAT
ATCATATGAGAGCCCTGAAAGTGACGAGTGGGAGCTAGATGATGGCTCta
gaccctgtcagaagaaatattttgagcaCCATCATTATGATCAAGAATCT
AGAACCTTCACTGGCAATATTGATTGGACACCAACAAAATTCTACGGTGA
AGCATTGTGGAAATACACAATGATCTTTTCAGAGGATTTTCTCACTATTG
AAAGTGGAAATGTGCAGGGTTTTAAAGAAGTCAACGGGCCACCTGATGGT
GAATTGAATATCTTTGGTGAGGATCTAGTTTATGAAAGAGTTTTATCAGC
AGATTTTGATTCTGATGATGCCAATGAAGATTAAACAATGAACAGGGAAA
ATATAATATCTGGGTATTTTTGTAAAAAAACTTTCACTATTGTAAAAAAG
CATTATTTATCTATCAATAGAAACTTTATGATTTTGTAAATTAACTTTAA
TTCTCTAAATTATTATATGAACATCAAACTTTTTATATCAATTACTTTTC
TATAAATTTTAAGATACAATATATAAAACGCTACAATAAAAAATATCAAA
AATGAAATTCTTCACTAGCTTCCTCTTTATTTTTTAGCGATGTCAAAGTG
ATTGTTACTGAAATGGTATCTATTTTTTTCTGTGTTTCATTTCTATATCT
AGTCTTTTCTAGGCTACGTCATATCTTCCTTCGTTTCGAGCGTAAAACTC
CTACTCTTCGGGCTATGAGCACTGCTCTTGTTTTGAATATTGAAATTCTC
CCGATAAATGGCATGCGCACTGAGGTTTTAATGAAACAATAGAGAGTTTC
GAAACCTAAGCCAATCAGCTGTGTTTTAAACATTCTTTTATTTAAA

Coding sequence (CDS) from alignment at scaffold_233:976251..984746+

>TCONS_00053593 ID=TCONS_00053593|Name=TCONS_00053593|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_233:976251..984746+ (Clytia hemisphaerica)
CATTACGTTACTGGCAATTGTTGCTGTTTGCAGCTGCACAGAGATTTTGG
TTCCAAAATGAcggataagaaaaatgaatgttGTTTATGCAAGGGACCTA
TTAAAAACAAATGCACTTTGAAATGCTCTCACAATTTTTGTAGGGCGTGT
ATCAAAAAGGTTATCAACCATCCTAATCAGGTTAAATGTCCCTATTGTCA
GCAAGATTCTGAATCATCAGATATTACACTTGAAAGTGGTGAAGATGCTT
CAATATTGTTTAATGTCAAACTAACAAACATACTTGGTAGCATTTACATA
CAATGTGATACCATTGGTTTAGCATCCTACCACTTTGGAACTCTGTCAAA
CCCTTATATATCATATGAGAGCCCTGAAAGTGACGAGTGGGAGCTAGATG
ATGGCTCtagaccctgtcagaagaaatattttgagcaCCATCATTATGAT
CAAGAATCTAGAACCTTCACTGGCAATATTGATTGGACACCAACAAAATT
CTACGGTGAAGCATTGTGGAAATACACAATGATCTTTTCAGAGGATTTTC
TCACTATTGAAAGTGGAAATGTGCAGGGTTTTAAAGAAGTCAACGGGCCA
CCTGATGGTGAATTGAATATCTTTGGTGAGGATCTAGTTTATGAAAGAGT
TTTATCAGCAGATTTTGATTCTGATGATGCCAATGAAGATTAACATTACG
TTACTGGCAATTGTTGCTGTTTGCAGCTGCACAGAGATTTTGGTTCCAAA
ATGAcggataagaaaaatgaatgttGTTTATGCAAGGGACCTATTAAAAA
CAAATGCACTTTGAAATGCTCTCACAATTTTTGTAGGGCGTGTATCAAAA
AGGTTATCAACCATCCTAATCAGGTTAAATGTCCCTATTGTCAGCAAGAT
TCTGAATCATCAGATATTACACTTGAAAGTGGTGAAGATGCTTCAATATT
GTTTAATGTCAAACTAACAAACATACTTGGTAGCATTTACATACAATGTG
ATACCATTGGTTTAGCATCCTACCACTTTGGAACTCTGTCAAACCCTTAT
ATATCATATGAGAGCCCTGAAAGTGACGAGTGGGAGCTAGATGATGGCTC
tagaccctgtcagaagaaatattttgagcaCCATCATTATGATCAAGAAT
CTAGAACCTTCACTGGCAATATTGATTGGACACCAACAAAATTCTACGGT
GAAGCATTGTGGAAATACACAATGATCTTTTCAGAGGATTTTCTCACTAT
TGAAAGTGGAAATGTGCAGGGTTTTAAAGAAGTCAACGGGCCACCTGATG
GTGAATTGAATATCTTTGGTGAGGATCTAGTTTATGAAAGAGTTTTATCA
GCAGATTTTGATTCTGATGATGCCAATGAAGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033818XLOC_033818Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053593-proteinTCONS_00053593-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053593-exon-scaffold_233-1491911889:976251..976300TCONS_00053593-exon-scaffold_233-1491911889:976251..976300Clytia hemisphaericaexon
TCONS_00053593-exon-scaffold_233-1510915933:976251..976300TCONS_00053593-exon-scaffold_233-1510915933:976251..976300Clytia hemisphaericaexon
TCONS_00053593-exon-scaffold_233-1575043694:976251..976300TCONS_00053593-exon-scaffold_233-1575043694:976251..976300Clytia hemisphaericaexon
TCONS_00053593-exon-scaffold_233-1491911889:983592..984746TCONS_00053593-exon-scaffold_233-1491911889:983592..984746Clytia hemisphaericaexon
TCONS_00053593-exon-scaffold_233-1510915933:983592..984746TCONS_00053593-exon-scaffold_233-1510915933:983592..984746Clytia hemisphaericaexon
TCONS_00053593-exon-scaffold_233-1575043694:983592..984746TCONS_00053593-exon-scaffold_233-1575043694:983592..984746Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:976251..984746 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.09611	1.78077	0	0	0	0	0	0	0	0	0	0	1.28576	0.08509	0	0	0	0	6.63704	5.85867	0	0	7.88545	7.19497	0	0	1.26444	0.691283	4.23458	2.09383
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR001841Znf_RING
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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