TCONS_00053596 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00053596
Unique Name	TCONS_00053596
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1102

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_233:1007580..1011154+
coding sequence from alignment at scaffold_233:1007580..1011154+

transcript sequence

>TCONS_00053596 ID=TCONS_00053596|Name=TCONS_00053596|organism=Clytia hemisphaerica|type=transcript|length=1102bp
ATTGAGGGAGCCTGAACaaaccttttgaaaaatgtttcatcaAATTGTAT
AATTActgttttcttcaattttccgTTTATTTCACTACAGAACGAAGATG
GGAAGGTTATATATCATCTGTGGATTGCTGGCAGCTTTCATTGCACTTTC
ATATGGAGCTGACaaatgtgaaaatgaaagttgggATTTGACATGCTGGA
GAAAGAAGAAGTTTACTCAGAAGGATATGTGCTACAAAGCGGAGGGTAAA
CAGAAATGCGCTGAAACATGTAATCTTTGTAACGAGAAGTGCGGTATCTC
CAAAGTTTCACAAAGTCGAATTGTCAACGGTGTCGAAGCGAAAGAAGGAG
CTTGGCCATGGATCGCCTCTCTCCAACTTCAAGGAAAACATTTCTGTGGA
GCTACCATTTTGACACCAAAATGGGTTCTAGCAGCCAGTCATTGTGTTCA
ACCACTGAAGAACATGCCAAATGCTATGGACGCGTTTACCGTGACACTGG
GAGCTCACGATATCACCAAATCGGAACCTAAACAACAAACAATCAAAGTG
AAACGTTTCATCATACACAAGGATTATGATACACGTGTGATGATGGCAGA
TATCGCTCTTCTGGAGCTGGAGACACCAGCAATGTTCAATGATCGTGTTG
TGACACCCTGTCTCCCCAATGAAGGAAGTTATCCACCAAAAGATTTGAAA
TGTGTGGTTGCAGGATGGGGCATTACCAAATTCCCAAGCACCGATACCGC
ATCAAAACTTCAACAGACCATCCTCCCAGTGGTTGGTACACCACATCAAG
GTTGCCATAACAACAAAGAAGTTGTCTGTGTTGGTAACGGATTCACCAAA
ACATCTGAGGgTAAGCAACAACCAAATGCATGTCAAGGTGACTCTGGTGG
TCCATTAGTTTGTCAACTTCCAAGCGGTCAATGGAGATTGGAGGGTGTGG
CTAGTTATGTTCACACTTATTGTAAATACTATACAGCTTACGCTCCAGTC
AATAAGTACATGCCTTGGATCAAACAATATGTACCAGGATTGTGAAAAAA
GATTAATTTTCACCTGAAAATATACCATTAAtaaatattaaatttatttc
gt

Run BLAST on NCBI

protein sequence of TCONS_00053596-protein

>TCONS_00053596-protein ID=TCONS_00053596-protein|Name=TCONS_00053596-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MGRLYIICGLLAAFIALSYGADKCENESWDLTCWRKKKFTQKDMCYKAEG
KQKCAETCNLCNEKCGISKVSQSRIVNGVEAKEGAWPWIASLQLQGKHFC
GATILTPKWVLAASHCVQPLKNMPNAMDAFTVTLGAHDITKSEPKQQTIK
VKRFIIHKDYDTRVMMADIALLELETPAMFNDRVVTPCLPNEGSYPPKDL
KCVVAGWGITKFPSTDTASKLQQTILPVVGTPHQGCHNNKEVVCVGNGFT
KTSEGKQQPNACQGDSGGPLVCQLPSGQWRLEGVASYVHTYCKYYTAYAP
VNKYMPWIKQYVPGL

Run BLAST on NCBI

transcript from alignment at scaffold_233:1007580..1011154+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00053596 ID=TCONS_00053596|Name=TCONS_00053596|organism=Clytia hemisphaerica|type=transcript|length=3575bp|location=Sequence derived from alignment at scaffold_233:1007580..1011154+ (Clytia hemisphaerica)
ATTGAGGGAGCCTGAACaaaccttttgaaaaatgtttcatcaAATTGTAT
AATTActgttttcttcaattttccgTTTATTTCACTACAGAACGAAGATG
GGAAGGTTATATATCATCTGTGGATTGCTGGCAGCTTTCATTGCACTTTC
ATGTGAGTCTTTAATACTACGTTGGTAAGGCTTGAGCCCtgaaatttgtc
aatttttttcactatctcgtaaagtaaaagcttttatATAATCTAAGCAT
GGCAAAGGATAGCCCTcgacccaataagcataaatatggtttAATACCAG
GGATGgtcaaagtaaatttttcagaaatttaaagcccTGACCCGGAAATT
TGAGTTACTTATTGGATTACTAAGGCTTTGCTTTTTACTCTACCTCATTA
GAATACATAATGGACCCCCCCCCAATAATACTGTGAGGACAAAATGTGCA
AAAGCTAGAATTAAAATGTTTTATCCTAGTATTCACTTTGGTTGAACTTT
TTCTTCCTTGAATGTATCAGATGGAGCTGACaaatgtgaaaatgaaagtt
gggATTTGACATGCTGGAGAAAGAAGAAGTTTACTCAGAAGGATATGTGC
TACAAAGCGGAGGGTAAACAGAAATGCGCTGAAACATGTAATCTTTGTAA
CGAGAAGTGCGGTATCTCCAAAGTTTCACAAAGTCGAATTGTCAACGGTG
TCGAAGCGAAAGAAGGAGCTTGGCCATGGATCGCCTCTCTCCAACTTCAA
GGAAAACATTTCTGTGGAGCTACCATTTTGACACCAAAATGGGTGAGTCG
TCTGAATCCCTTGGAAATGCCGAAGTTGACAATAAGTGTGATCTTTCATT
GAAATCTTCGTTCAATACAAGCTGCCCCATTAACAATCCATGTATAAGGC
TTAGCTACACAGCGAACTCTTTAATTTCTATTATTTAAGGAGTGATTGGT
CCAGCAATAGAATAGCCCCTTAAGATTTTAGAAAACTTTATATTTCAGGT
TCTAGCAGCCAGTCATTGTGTTCAACCACTGAAGAACATGCCAAATGCTA
TGGACGCGTTTACCGTGACACTGGGAGCTCACGATATCACCAAATCGGAA
CCTAAACAACAAACAATCAAAGTGAAACGTTTCATCATACACAAGGATTA
TGATACACGTGTGATGATGGCAGATATCGCTCTTCTGGAGCTGGAGACAC
CAGCAATGTTCAATGATCGTGTTGTGACACCCTGTCTCCCCAATGAAGGA
AGTTATCCACCAAAAGATTTGAAATGTGTGGTTGCAGGTAATGGTGCACC
TAAAGCTTCGAGGCCGAGAATCTGAGAATATCCTTAGAACATTAAGGCTA
TGCGAGCTCAAAaagatattgaaaagaaaaaactatttaaaaaactaatt
ttaggcttaattaaaacccaaaaatgttttgaacttttaaatggttttat
ataaaaattagaCATCTAGGTACGTCAATCAGTTAGCTGGTGGTCTTATA
CAGGCATTTTCATAAATAAACTACTGGTTTAGTTAAGAATTTCCctctaa
aatgataaaatagtCCCGGGCCCCGTTCATTTCCTCGTTACATACAACAG
GTGTACGCTCAGAAGTCACTGATACAGGaaccattttgagaaaaaaaagc
tttagattatttttcttttactaTAGGATGGGGCATTACCAAATTCCCAA
GCACCGATACCGCATCAAAACTTCAACAGACCATCCTCCCAGTGGTTGGT
ACACCACATCAAGGTTGCCATAACAACAAAGAAGTTGTCTGTGTTGGTAA
CGGATTCACCAAAACATCTGAGGGTAGGAGATATATTTAGTCTTAACTTT
TGTCAAACATTGAAGACCGACTCaaacttttaaaagtgtttttcaGATAT
CTTTCGTTCAATGGAACATCTGACTTGAGATCGTCCCGGGGAGATTTTAA
CCCGATTGTAAAACTCACTGGGAAAAAGACTGTAACTTTGAGTATCCTGA
CTTGATTTTGGAGAAGTTTTTAAATAATGGGATTTGTAATCTCACCAATT
TCAAACAGACCATTCTCCATTTGGATTACACAAACAGGGTGTTTCTTAGA
GtgttatttttccttttcaggTAAGCAACAACCAAATGCATGTCAAGGTG
ACTCTGGTGGTCCATTAGTTTGTCAACTTCCAAGCGGTCAATGGAGATTG
GAGGGTGTGGCTAGTTATGTTCACACTTATTGTAAATACTATACAGCTTA
CGCTCCAGTCAATAAGTACATGCCTTGGATCAAACAATATGTACCAGGAT
TGTGAAAAAAGATTAATTTTCACCTGAAAATATACCATTAAtaaatatta
aatttatttcgtcaaaattttttccaCGTGTTTTTACTCACATTTCGATA
TATTATCCtatttactcttaggtgccaaataaacggccccccccgcttgt
tagtttttggtttttttccaacccccccggacgttattaggacccccccg
tttataaatttttgaaaaaattcccagctcccaaaaggaaagtttcttgt
tttactctaTAAAGCCTAAATTTggtctattttgaccctttttagggttt
NAAAAAACTAATTTTAGGCTTAATTAAAACCCAAAAatgttttgaacttt
taaatggttttatataaaaattagaCATCTAGGTACGTCAATCTGTTAGC
TGGTGGTCTTATACAGGCATTTTCATAAATAAACTACTGGTTTAGTTAAG
AATTTCCCTCTAAAATGATAAACTAGTCCCGGGCCCCGTTCATTTCCTCG
TTACAGACAACAGGTGTACACTCAGAAGTCACTGATACAGCAaacaattt
tgagaaaaaaaagcttccaatatttttcttttactaTAGGATGGGGCATT
ACCAAATTCCCAAGCTCCAATACCGCATCAAAACTTCAACAGACCATCCT
CCCAGTGGTTGGTACACCACATCAAGGTTGCCATAACAACAAAGAAGTTG
TCTGTGTTGGTAACGGATTCACCAAAACATCTGAGGGTAGGAGATATATT
TAGTCTTAACTTTTGTCAAACATTGAAGACCGACTCaaacttttaaaagt
gtttttcaGATATCTTTCGTTCAATGGAACATCTGACTTGAGATCGTCCC
GGGGAGATTTTAACCCGATTGTAAAACTCACTGGGAAAAAGACTGTAACT
TTGAGTATCCTGACTTGATTTTGGAGAAGTTTTTAAATAATGGGATTTGT
AATCTCACCAATTTCAAACAGACCATTCTCCATTTGGATTACACAAACAG
GGTGTTTCTTAGAGtgttatttttccttttcaggTAAGCAACAACCAAAT
GCATGTCAAGGTGACTCTGGTGGTCCATTAGTTTGTCAACTTCCAAGCGG
TCAATGGAGATTGGAGGGTGTGGCTAGTTATGTTCACACTTATTGTAAAT
ACTATACAGCTTACGCTCCAGTCAATAAGTACATGCCTTGGATCAAACAA
TATGTACCAGGATTGTGAAAAAAGATTAATTTTCACCTGAAAATATACCA
TTAAtaaatattaaatttatttcgt

Coding sequence (CDS) from alignment at scaffold_233:1007580..1011154+

>TCONS_00053596 ID=TCONS_00053596|Name=TCONS_00053596|organism=Clytia hemisphaerica|type=CDS|length=5688bp|location=Sequence derived from alignment at scaffold_233:1007580..1011154+ (Clytia hemisphaerica)
ATGGGAAGGTTATATATCATCTGTGGATTGCTGGCAGCTTTCATTGCACT
TTCATATGGAGCTGACaaatgtgaaaatgaaagttgggATTTGACATGCT
GGAGAAAGAAGAAGTTTACTCAGAAGGATATGTGCTACAAAGCGGAGGGT
AAACAGAAATGCGCTGAAACATGTAATCTTTGTAACGAGAAGTGCGGTAT
CTCCAAAGTTTCACAAAGTCGAATTGTCAACGGTGTCGAAGCGAAAGAAG
GAGCTTGGCCATGGATCGCCTCTCTCCAACTTCAAGGAAAACATTTCTGT
GGAGCTACCATTTTGACACCAAAATGGGTTCTAGCAGCCAGTCATTGTGT
TCAACCACTGAAGAACATGCCAAATGCTATGGACGCGTTTACCGTGACAC
TGGGAGCTCACGATATCACCAAATCGGAACCTAAACAACAAACAATCAAA
GTGAAACGTTTCATCATACACAAGGATTATGATACACGTGTGATGATGGC
AGATATCGCTCTTCTGGAGCTGGAGACACCAGCAATGTTCAATGATCGTG
TTGTGACACCCTGTCTCCCCAATGAAGGAAGTTATCCACCAAAAGATTTG
AAATGTGTGGTTGCAGGATGGGGCATTACCAAATTCCCAAGCACCGATAC
CGCATCAAAACTTCAACAGACCATCCTCCCAGTGGTTGGTACACCACATC
AAGGTTGCCATAACAACAAAGAAGTTGTCTGTGTTGGTAACGGATTCACC
AAAACATCTGAGGgTAAGCAACAACCAAATGCATGTCAAGGTGACTCTGG
TGGTCCATTAGTTTGTCAACTTCCAAGCGGTCAATGGAGATTGGAGGGTG
TGGCTAGTTATGTTCACACTTATTGTAAATACTATACAGCTTACGCTCCA
GTCAATAAGTACATGCCTTGGATCAAACAATATGTACCAGGATTGTGAAT
GGGAAGGTTATATATCATCTGTGGATTGCTGGCAGCTTTCATTGCACTTT
CATATGGAGCTGACaaatgtgaaaatgaaagttgggATTTGACATGCTGG
AGAAAGAAGAAGTTTACTCAGAAGGATATGTGCTACAAAGCGGAGGGTAA
ACAGAAATGCGCTGAAACATGTAATCTTTGTAACGAGAAGTGCGGTATCT
CCAAAGTTTCACAAAGTCGAATTGTCAACGGTGTCGAAGCGAAAGAAGGA
GCTTGGCCATGGATCGCCTCTCTCCAACTTCAAGGAAAACATTTCTGTGG
AGCTACCATTTTGACACCAAAATGGGTTCTAGCAGCCAGTCATTGTGTTC
AACCACTGAAGAACATGCCAAATGCTATGGACGCGTTTACCGTGACACTG
GGAGCTCACGATATCACCAAATCGGAACCTAAACAACAAACAATCAAAGT
GAAACGTTTCATCATACACAAGGATTATGATACACGTGTGATGATGGCAG
ATATCGCTCTTCTGGAGCTGGAGACACCAGCAATGTTCAATGATCGTGTT
GTGACACCCTGTCTCCCCAATGAAGGAAGTTATCCACCAAAAGATTTGAA
ATGTGTGGTTGCAGGATGGGGCATTACCAAATTCCCAAGCACCGATACCG
CATCAAAACTTCAACAGACCATCCTCCCAGTGGTTGGTACACCACATCAA
GGTTGCCATAACAACAAAGAAGTTGTCTGTGTTGGTAACGGATTCACCAA
AACATCTGAGGgTAAGCAACAACCAAATGCATGTCAAGGTGACTCTGGTG
GTCCATTAGTTTGTCAACTTCCAAGCGGTCAATGGAGATTGGAGGGTGTG
GCTAGTTATGTTCACACTTATTGTAAATACTATACAGCTTACGCTCCAGT
CAATAAGTACATGCCTTGGATCAAACAATATGTACCAGGATTGTGAATGG
GAAGGTTATATATCATCTGTGGATTGCTGGCAGCTTTCATTGCACTTTCA
TATGGAGCTGACaaatgtgaaaatgaaagttgggATTTGACATGCTGGAG
AAAGAAGAAGTTTACTCAGAAGGATATGTGCTACAAAGCGGAGGGTAAAC
AGAAATGCGCTGAAACATGTAATCTTTGTAACGAGAAGTGCGGTATCTCC
AAAGTTTCACAAAGTCGAATTGTCAACGGTGTCGAAGCGAAAGAAGGAGC
TTGGCCATGGATCGCCTCTCTCCAACTTCAAGGAAAACATTTCTGTGGAG
CTACCATTTTGACACCAAAATGGGTTCTAGCAGCCAGTCATTGTGTTCAA
CCACTGAAGAACATGCCAAATGCTATGGACGCGTTTACCGTGACACTGGG
AGCTCACGATATCACCAAATCGGAACCTAAACAACAAACAATCAAAGTGA
AACGTTTCATCATACACAAGGATTATGATACACGTGTGATGATGGCAGAT
ATCGCTCTTCTGGAGCTGGAGACACCAGCAATGTTCAATGATCGTGTTGT
GACACCCTGTCTCCCCAATGAAGGAAGTTATCCACCAAAAGATTTGAAAT
GTGTGGTTGCAGGATGGGGCATTACCAAATTCCCAAGCACCGATACCGCA
TCAAAACTTCAACAGACCATCCTCCCAGTGGTTGGTACACCACATCAAGG
TTGCCATAACAACAAAGAAGTTGTCTGTGTTGGTAACGGATTCACCAAAA
CATCTGAGGgTAAGCAACAACCAAATGCATGTCAAGGTGACTCTGGTGGT
CCATTAGTTTGTCAACTTCCAAGCGGTCAATGGAGATTGGAGGGTGTGGC
TAGTTATGTTCACACTTATTGTAAATACTATACAGCTTACGCTCCAGTCA
ATAAGTACATGCCTTGGATCAAACAATATGTACCAGGATTGTGAATGGGA
AGGTTATATATCATCTGTGGATTGCTGGCAGCTTTCATTGCACTTTCATA
TGGAGCTGACaaatgtgaaaatgaaagttgggATTTGACATGCTGGAGAA
AGAAGAAGTTTACTCAGAAGGATATGTGCTACAAAGCGGAGGGTAAACAG
AAATGCGCTGAAACATGTAATCTTTGTAACGAGAAGTGCGGTATCTCCAA
AGTTTCACAAAGTCGAATTGTCAACGGTGTCGAAGCGAAAGAAGGAGCTT
GGCCATGGATCGCCTCTCTCCAACTTCAAGGAAAACATTTCTGTGGAGCT
ACCATTTTGACACCAAAATGGGTTCTAGCAGCCAGTCATTGTGTTCAACC
ACTGAAGAACATGCCAAATGCTATGGACGCGTTTACCGTGACACTGGGAG
CTCACGATATCACCAAATCGGAACCTAAACAACAAACAATCAAAGTGAAA
CGTTTCATCATACACAAGGATTATGATACACGTGTGATGATGGCAGATAT
CGCTCTTCTGGAGCTGGAGACACCAGCAATGTTCAATGATCGTGTTGTGA
CACCCTGTCTCCCCAATGAAGGAAGTTATCCACCAAAAGATTTGAAATGT
GTGGTTGCAGGATGGGGCATTACCAAATTCCCAAGCACCGATACCGCATC
AAAACTTCAACAGACCATCCTCCCAGTGGTTGGTACACCACATCAAGGTT
GCCATAACAACAAAGAAGTTGTCTGTGTTGGTAACGGATTCACCAAAACA
TCTGAGGgTAAGCAACAACCAAATGCATGTCAAGGTGACTCTGGTGGTCC
ATTAGTTTGTCAACTTCCAAGCGGTCAATGGAGATTGGAGGGTGTGGCTA
GTTATGTTCACACTTATTGTAAATACTATACAGCTTACGCTCCAGTCAAT
AAGTACATGCCTTGGATCAAACAATATGTACCAGGATTGTGAATGGGAAG
GTTATATATCATCTGTGGATTGCTGGCAGCTTTCATTGCACTTTCATATG
GAGCTGACaaatgtgaaaatgaaagttgggATTTGACATGCTGGAGAAAG
AAGAAGTTTACTCAGAAGGATATGTGCTACAAAGCGGAGGGTAAACAGAA
ATGCGCTGAAACATGTAATCTTTGTAACGAGAAGTGCGGTATCTCCAAAG
TTTCACAAAGTCGAATTGTCAACGGTGTCGAAGCGAAAGAAGGAGCTTGG
CCATGGATCGCCTCTCTCCAACTTCAAGGAAAACATTTCTGTGGAGCTAC
CATTTTGACACCAAAATGGGTTCTAGCAGCCAGTCATTGTGTTCAACCAC
TGAAGAACATGCCAAATGCTATGGACGCGTTTACCGTGACACTGGGAGCT
CACGATATCACCAAATCGGAACCTAAACAACAAACAATCAAAGTGAAACG
TTTCATCATACACAAGGATTATGATACACGTGTGATGATGGCAGATATCG
CTCTTCTGGAGCTGGAGACACCAGCAATGTTCAATGATCGTGTTGTGACA
CCCTGTCTCCCCAATGAAGGAAGTTATCCACCAAAAGATTTGAAATGTGT
GGTTGCAGGATGGGGCATTACCAAATTCCCAAGCACCGATACCGCATCAA
AACTTCAACAGACCATCCTCCCAGTGGTTGGTACACCACATCAAGGTTGC
CATAACAACAAAGAAGTTGTCTGTGTTGGTAACGGATTCACCAAAACATC
TGAGGgTAAGCAACAACCAAATGCATGTCAAGGTGACTCTGGTGGTCCAT
TAGTTTGTCAACTTCCAAGCGGTCAATGGAGATTGGAGGGTGTGGCTAGT
TATGTTCACACTTATTGTAAATACTATACAGCTTACGCTCCAGTCAATAA
GTACATGCCTTGGATCAAACAATATGTACCAGGATTGTGAATGGGAAGGT
TATATATCATCTGTGGATTGCTGGCAGCTTTCATTGCACTTTCATATGGA
GCTGACaaatgtgaaaatgaaagttgggATTTGACATGCTGGAGAAAGAA
GAAGTTTACTCAGAAGGATATGTGCTACAAAGCGGAGGGTAAACAGAAAT
GCGCTGAAACATGTAATCTTTGTAACGAGAAGTGCGGTATCTCCAAAGTT
TCACAAAGTCGAATTGTCAACGGTGTCGAAGCGAAAGAAGGAGCTTGGCC
ATGGATCGCCTCTCTCCAACTTCAAGGAAAACATTTCTGTGGAGCTACCA
TTTTGACACCAAAATGGGTTCTAGCAGCCAGTCATTGTGTTCAACCACTG
AAGAACATGCCAAATGCTATGGACGCGTTTACCGTGACACTGGGAGCTCA
CGATATCACCAAATCGGAACCTAAACAACAAACAATCAAAGTGAAACGTT
TCATCATACACAAGGATTATGATACACGTGTGATGATGGCAGATATCGCT
CTTCTGGAGCTGGAGACACCAGCAATGTTCAATGATCGTGTTGTGACACC
CTGTCTCCCCAATGAAGGAAGTTATCCACCAAAAGATTTGAAATGTGTGG
TTGCAGGATGGGGCATTACCAAATTCCCAAGCACCGATACCGCATCAAAA
CTTCAACAGACCATCCTCCCAGTGGTTGGTACACCACATCAAGGTTGCCA
TAACAACAAAGAAGTTGTCTGTGTTGGTAACGGATTCACCAAAACATCTG
AGGgTAAGCAACAACCAAATGCATGTCAAGGTGACTCTGGTGGTCCATTA
GTTTGTCAACTTCCAAGCGGTCAATGGAGATTGGAGGGTGTGGCTAGTTA
TGTTCACACTTATTGTAAATACTATACAGCTTACGCTCCAGTCAATAAGT
ACATGCCTTGGATCAAACAATATGTACCAGGATTGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033820	XLOC_033820	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00053596-protein	TCONS_00053596-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_233	supercontig	scaffold_233:1007580..1011154 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132429	0.219537	0.101211	0.146696	0.44647	0.235204	0.493749	0.517306	0	0.433117	1.14043	0.30428	86.7104	77.8225	22.2086	48.1071	5.86543	7.67278	316.853	273.338	38.2839	41.4628	8.59417	10.5604	15.4081	17.5375	0.762663	0.600761	0.73493	0.763753

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001314	Peptidase_S1A
IPR001254	Trypsin_dom
IPR033116	TRYPSIN_SER
IPR009003	Peptidase_S1_PA

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004252	serine-type endopeptidase activity

Blast

[Close]

BLAST of TCONS_00053596 vs. Swiss-Prot (Human)
Match: PRS33 (Serine protease 33 OS=Homo sapiens GN=PRSS33 PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 1.617e-39
Identity = 92/263 (34.98%), Postives = 132/263 (50.19%), Query Frame = 2

Query:  281 NEKCGISKVSQSRIVNGVEAKEGAWPWIASLQLQGKHFCGATILTPKWVLAASHCVQPLKNMPNAMDAFTVTLGAHDITKSEPKQQTIKVKRFIIHKDYDTRVMMADIALLELETPAMFNDRVVTPCLPNEGSYPPKDLKCVVAGWGITKFPSTDTAS--KLQQTILPVV------GTPHQGCH--NNKEVVCVGNGFTKTSEGKQQPNACQGDSGGPLVCQLPSGQWRLEGVASYVH--TYCKYYTAYAPVNKYMPWIKQYV 1033
            +  CG  ++S SRIV G + ++G WPW AS+Q +G H CG +++ P+WVL A+HC  P + +P     + V LGA  +  + P+  ++ V+R ++  DY       D+ALL+L  P   + RV   CLP  G+ PP    C V GWG  + P         LQ   +P++      G  H G      + +V  G+      +G +  +ACQGDSGGPL C L SG W L GV S+            Y  V  Y PWI+  V
Sbjct:   25 SAACGQPRMS-SRIVGGRDGRDGEWPWQASIQHRGAHVCGGSLIAPQWVLTAAHCF-PRRALPA---EYRVRLGALRLGSTSPRTLSVPVRRVLLPPDYSEDGARGDLALLQLRRPVPLSARVQPVCLPVPGARPPPGTPCRVTGWGSLR-PGVPLPEWRPLQGVRVPLLDSRTCDGLYHVGADVPQAERIVLPGSLCAGYPQGHK--DACQGDSGGPLTC-LQSGSWVLVGVVSWGKGCALPNRPGVYTSVATYSPWIQARV 278

The following BLAST results are available for this feature:

BLAST of TCONS_00053596 vs. Swiss-Prot (Human)

BLAST of TCONS_00053596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PRS33	1.617e-39	34.98	Serine protease 33 OS=Homo sapiens GN=PRSS33 PE=1 ...	[more]

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TCONS_00053596 (transcript) - C. hemisphaerica