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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053672 ID=TCONS_00053672|Name=TCONS_00053672|organism=Clytia hemisphaerica|type=transcript|length=4029bpRun BLAST on NCBI protein sequence of TCONS_00053672-protein >TCONS_00053672-protein ID=TCONS_00053672-protein|Name=TCONS_00053672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp MLKIHRNLLRKAMVGQRLLKVSSRSPAAMTTMRQKGTFSMDPELPSLPVPRun BLAST on NCBI transcript from alignment at scaffold_233:652093..662848- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053672 ID=TCONS_00053672|Name=TCONS_00053672|organism=Clytia hemisphaerica|type=transcript|length=10756bp|location=Sequence derived from alignment at scaffold_233:652093..662848- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:652093..662848- >TCONS_00053672 ID=TCONS_00053672|Name=TCONS_00053672|organism=Clytia hemisphaerica|type=CDS|length=6336bp|location=Sequence derived from alignment at scaffold_233:652093..662848- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053672 vs. Swiss-Prot (Human)
Match: CACP (Carnitine O-acetyltransferase OS=Homo sapiens GN=CRAT PE=1 SV=5) HSP 1 Score: 293.508 bits (750), Expect = 1.900e-137 Identity = 145/319 (45.45%), Postives = 204/319 (63.95%), Query Frame = 1
Query: 1180 QVLHGGGTHQNSMNRWFDKICQFVINRNGMVGLTYEHSGAEGPPVLAMCDQIMQMDFNREASVDVPKSTGIEAPKMLTWNLDYDLVDRIELAKEKMDQMSSDVDTRLYNFDLFGKSVPKKFRISPDAFFQVSLQLAYYRLHSHHPPTYESASIRKFKKGRTETIRSATPAAARYAREMDRTNYSDEEKKGLFFNAVDAHVKYTQDAINFEAIDRHLLGLKLTALESGIPLPELFRDKAFGYAMHFRLSTSQVPAKRAACLCFGPVVPDGYGVCYNPMESRFVYAVSSFNSHPKTQAGDLGDEIAKALEDNHVLLASQSK 2136
Q+LHGGG+ NS NRWFDK QF++ +G GL YEH+ AEGPP++ + D +++ + ++ + + PK L +N+ ++ IE AK+ + M D+D + F FGK PK ++SPDAF Q++LQLAYYR++ TYESAS+R F GRT+TIRSA+ + + + MD ++ ++ +K L AV AH YT AI EA DRHLLGLKL A+E + +P++F D ++ AMHF LSTSQVPAK + FGPVVPDGYGVCYNPME+ +++S++NS +T A L + KAL D LL S +
Sbjct: 307 QMLHGGGSRLNSGNRWFDKTLQFIVAEDGSCGLVYEHAAAEGPPIVTLLDYVIE--YTKKPELVRSPLVPLPMPKKLRFNITPEIKSDIEKAKQNLSIMIQDLDITVMVFHHFGKDFPKSEKLSPDAFIQMALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASMDSLTFVKAMDDSSVTEHQKVELLRKAVQAHRGYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFHLSTSQVPAKTDCVMFFGPVVPDGYGVCYNPMEAHINFSLSAYNSCAETNAARLAHYLEKALLDMRALLQSHPR 623 HSP 2 Score: 217.238 bits (552), Expect = 1.900e-137 Identity = 111/268 (41.42%), Postives = 161/268 (60.07%), Query Frame = 2
Query: 323 QTLSKYINTLEPILFDSEYAQTKRVVADFMKPGGVGEKLQRKLEEKASKSDNWLSEWWDHCAYFGFRAPVVINSSPGIAFPQENFKSDNDQLRYAANLIQTVVRFKETIDNQSFPVDFAGKNPLSMRQYGKLLSICRVPYAKKD--GEIVTRPEDSRHVIVAHKNHFFKMEVYLPGTNEVMSEGQLMHQLNHILNSSRFEDDLPVGILTCEDRNVWSQGYKRLTRDAENKENVEEIIKSICLICLDQPVTIPQEETPRFSSQEGSESL 1120
Q+L Y+ L+PI+ + E+A TK++V +F GGVGE+LQ+ LE +A K++NWLSEWW AY +R PVVI SSPG+ P+++F QLR+AA LI+ V+ FK IDN++ PV++ G PL M QY ++LS CRVP K+D + H+ V H FF+++VY + ++ Q+ QL I NSS + PVGILT RN W++ Y L +D N+++V I KSI +CLD T+P+ + S + L
Sbjct: 45 QSLDHYLKALQPIVSEEEWAHTKQLVDEFQASGGVGERLQKGLERRARKTENWLSEWWLKTAYLQYRQPVVIYSSPGVMLPKQDFVDLQGQLRFAAKLIEGVLDFKVMIDNETLPVEYLGGKPLCMNQYYQILSSCRVPGPKQDTVSNFSKTKKPPTHITVVHNYQFFELDVYHSDGTPLTAD-QIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRDSVRSIQKSIFTVCLD--ATMPRVSEDVYRSHVAGQML 309 The following BLAST results are available for this feature:
BLAST of TCONS_00053672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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