TCONS_00053674 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00053674
Unique Name	TCONS_00053674
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2307

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_233:675583..680207-

transcript sequence

>TCONS_00053674 ID=TCONS_00053674|Name=TCONS_00053674|organism=Clytia hemisphaerica|type=transcript|length=2307bp
ctaaaatataatttcttcTCCTCTTCTCCTCATTCTTCATTCAGTCGTTT
TCGAGTAAGGCTATTCTTTTctgtttgaatgaaaattgtggGAAGGTCCT
TTTTGCTTCAGATTCTCAAAGAACTACATTTTAGGAGAAATTTAATTGAT
CATCATGGCTGATTTGAATGTGGCAGGTTTGATCAGTATCATCATCTTTT
ATTTGGCTATCCTTGGCATCGGTTTATTTGCTGCCTGGAGAAAGAACAAA
CACACGAAAGAGAATGCGCAAACCACACAAGACGAAACGAATGAAGTTAT
TTTAGCTGGAAGAACTATTGGGATGTTTATTGGTTGCTTCACTATGACTG
CAACATGGGTTGGTGGTGGTTACATCAATGGAACAGCAGAGTCAGTGTAC
AATGATGGTCTGGTCTGGGCTCAAGCACCATGGGGTTATGCTACCAGTTT
AGCGATGGGTGGTTTCTTTTTTGCTCGCAAAATGAGAGAAGCGGAATATA
TCACCATGTTGGACCCTCTGCAAGACAAGTACGGTCGTGTGATGGGTGCT
TTCCTTTACATTCCTGCTTTCCTTGGTGAAACATTTTGGTCTGCATCTAT
CCTGGCAGCTCTTGGTGCAACATTGACAGTTATCTTGGGGTTGAACATGA
ATATTTCCGTCATCGTGTCGGCGTGTATTGCTGTCGGCTACACCTTTTTT
GGTGGACTTTATTCAGTTGCATACACGGACGTCGTTCAATTGATTTGCAT
TGCGGTCGGATTGTGGTTGACGGTTCCTTTCTCTTTGACCAATGAAAACG
TTGAATCGATTGGTGCACGTAAAGAGGAATGGCTCGGCCAATTGTATGGT
GCTAAAGTCGGAAAATGGATTGATTACGCTTTCTTATTGatTTGTGGAGG
TATTCCATGGCAAGTGTATTTCCAACGTGTATTGTCTTCCAAGTCAGCTC
ACCGTGCTCAAATTCTCTCCTTCGTTGCTGCTTTCGGCTGTATTGTGCTG
GCTATCCCTGCAGTTCTGATCGGTGCCGCCGCCAAAAGCGCTGACTGGGG
AGCAGTAAGTGGGGCAGTGGACGCCAACCTTGTGACCAACAAAACCGGAG
AGTGGGTGATCACGGATACCAGACTGGTCCTCCCCATGGTTCTTCAATAC
TTAGCTCCTGGATGGGTGTCTTTCATTGGTCTTGGTGCCATCTCAGCTGC
TGTCATGTCTAGTGCTGACTCGTCAGTTTTGTCTGCTAGTTCCATGTTCG
GACATAATATCTACAAGTTGATCATCAGAAAAAATGCCAGTGCCAATGAA
ATTATTTGGGTGATTCGTATTGGTATCATCTTTGTTGGTATCATGGCAAC
GCTGGTTGGGTTGACGGTCGACAGCATCTACGCTTTGTTCCATTTGTGCT
CGGACCTGGTCTTTGTCATCCTCTTCCCACAGCTGGTGGGTGCTGTCCAC
ATCCAAGATGTCAACACGTATGGATCCATATGTGCTTACATAGTGGGATT
GTTCTTACGCATCACCGGTGGAGAAGAATTGATCGGGTTCCCGGCTACTT
TTAAATATCCTTACTATGACGAGACGTACAGTAATGGGAAAGGATCACAA
AATTTCCCCTTCCGTACCCTAGCTATGATTATTTCTTTCATCACGCTCGT
CTCTGTTTCCAAATTGGCTTATTATTTGTTCGATAATGAAATCTTGGGTG
AAAATTACGATTTTTTAGGCGTTTTGGAGCGCCGACGAAATCTTGCCGGC
AAGAAAGGAAGACGAGGTGAGGATGATGCTTTACCGCTACAAGAAAAATA
CAACGGATTCGACGACCCAACTCCTCAACAAATCTAAACGTACGTGTCAA
AATGATTTGTCAGACATCGCGTGCTACCAATATGTATCAATGTAGTTTTC
GAATATCTAATGAAAGCTTTTACAAGTTTTCAGGTCTCCTTAATAACCAT
GTGAAAAATGGCCAAGTGACTAGGACTGTATCCGTGATGACCTAGTAAAA
GTCTGACTGGCTTTTAAAAGACAGCTGGATAGACTGAATAATGCAAAATT
GAAATAAGCGTGATGGAGCTCTTTTGAAACAAGACGCTGAAAAGTTATTA
GGGCTGTGTTTagcattttaattattttttgtataatctcaaaagatatt
ttactttgtatttttaatttGTACTGTGTATTATCTCATTTACATGTAGG
CATTCATGGAAATATGTACGGTACTTCCTAtcaaattttcttcatttttc
tttggtttggtTAACCTCATTTACAGAAAGAAAGTTTTATACTCTTTAGC
GCAACAC

Run BLAST on NCBI

transcript from alignment at scaffold_233:675583..680207-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00053674 ID=TCONS_00053674|Name=TCONS_00053674|organism=Clytia hemisphaerica|type=transcript|length=4625bp|location=Sequence derived from alignment at scaffold_233:675583..680207- (Clytia hemisphaerica)
CTAAAATATAATTTCTTCTCCTCTTCTCCTCATTCTTCATTCAGTCGTTT
TCGAGTAAGGCTATTCTTTTCTGTTTGAATGAAAATTGTGGGAAGGTCCT
TTTTGCTTCAGATTCTCAAAGAACTACATTTTAGGTATGTTTTTCACTTT
CTTTATCAAAATTACTAGAGCCAAAAGTTGTTTATTAGCAGTGCCTCTAA
ATTACTTTATATATTTTTTGAACCACACCCAATTTCTCTTTCCGGAGAAA
ATTTTTTGACATTTTTTATTTCGTTGTTATCACTTTAATAATGGTTGACA
ATTAGTACTTGGACATGATTCTTCTTGCTGCCCTGTTAATGATTCATTAT
GAACAACCTTAGCGTTTGCAAACATGTTGGATGGGCGTTCCAATTCACCG
GCAGACGAGCTCACAATCTACTCTTTGGTCGTCATGGAAACTGCTCGAAA
GCCGCGCCTCGAAACGCCATAGGAGGTATTTAATCAAGGGAAGACAGGGT
GTATAAAACTCGTACCATATTAATCTGGGAATAACTCAGATAACCTGAAA
ATAGCATTTTTCAGCTTTTTCAGTTCATGTCATCGACTACATCAGTTAAA
TCACTAGATTTAGAAAATCTTTGTAAATTTAGTAAATCTTTGTAGTCAGA
CGTAGTTTGTCTAGTGTTTTTATCAATTTATCAATGGAGAAAACAATAGT
TAATTCTAAACAGAGTTTTGGGCAATAAATGTCAATAGGATAAAGCTTTG
TGGAGTGCTCAGATTCCAGACGGTCTAGGAAGATTCATCTGAAGTTATGC
AGTAAAATCTTTATTCAGAGTTGAGAAGAACAGATCCAAAGCATACTATT
TAATTCTACCTGGTTACAATATTCACTACAATTAAAAAACAAAACCATTA
TTCGCTATCTGCCATCTAAAGAAAGCTCTTGTACTTTCAGGAGAAATTTA
ATTGATCATCATGGCTGATTTGAATGTGGCAGGTTTGATCAGTATCATCA
TCTTTTATTTGGCTATCCTTGGCATCGGTTTATTTGCTGCCTGGAGAAAG
AACAAACACACGAAAGAGAATGCGCAAACCACACAAGACGAAACGAATGA
AGTTATTTTAGCTGGAAGAACTATTGGGATGTTTATTGGTTGCTTCACTA
TGACTGGTATGTCGCCTTTCCTTTCGTCTACCGTCACACTGAACAATCTC
TATGGTGACTAAAAATATTTGTGACAGTGTTGTTTCCAAATCAAAATGAG
CGGATGAATTTTGAAACCTTTTCAATATATCACAAAAAAAGGAGTTCTCA
ACCTCTGTAGCTTTTTAGACGTCTTTCTTAAGATCTCTTCGATTGCATTA
TGGAGCAAAAAAGCAGGTCCGAAAAGATTCATTCGAGCAGCAATATTCAG
AGCGACAATGGTTATTGCATTATGGATTAAGTGAATTTTCGGAGTGAATC
TTTATGCTCCATTTTTCTGGTTCATTAGCATTCAAATCTTTGATATATTT
TAGCAACATGGGTTGGTGGTGGTTACATCAATGGAACAGCAGAGTCAGTG
TACAATGATGGTCTGGTCTGGGCTCAAGCACCATGGGGTTATGCTACCAG
TTTAGCGATGGGTACGTATCTTCTAGCCTAGATATCTAAGCCAGATTGAT
TCCGTCACTTGGTAGAATCTGATGGTAAGTTGTGACTGGATATCTGGTAA
ACTTAAAATTCCGTACATCATAAAAATCATTAAAGCACCGATAACGCTAT
ATTGCGGTCAGCCATATCTTGGCCTTGTAAAAACTGGCTTGATTAACCAG
GCTACCTATCTTCTTCATTGTCTCGTGTAAAGATTTCTTCTCGATACTGT
TTGTGACAAAGGGACATTTCTACAACTTTAACTTGTTTCATAATTTCTTT
CAGGTGGTTTCTTTTTTGCTCGCAAAATGAGAGAAGCGGAATATATCACC
ATGTTGGACCCTCTGCAAGACAAGTACGGTCGTGTGATGGGTGCTTTCCT
TTACATTCCTGCTTTCCTTGGTGAAACATTTTGGTCTGCATCTATCCTGG
CAGCTCTTGGTGCAACATTGACAGTTATCTTGGGGTTGAACATGAATATT
TCCGTCATCGTGTCGGCGTGTATTGCTGTCGGCTACACCTTTTTTGGTGG
ACTTTATTCAGGTATAGGATGAAGCAAATCTTTTACTTATGTATGATGTG
AATGTTGTCACATATTTCATACCAGGACAGTGTCTCGCTATTGTTATATT
ATGCTGATATAAGCAAAAAGTGTTTTGCTTTTCCTCTTTCTGACCAATCT
TTCTACACATTCGTGTCAATCTAATGTGAAAAAGCTTGTGAATTAAAATT
GATGAGTAAGCAAACGACATCACTCTTATTTAAAAACAAAACCTTTAAAA
GTAAAGTTAAAGTATTCCAGAAATCGAATGGACTTAATATTTTTATTGAT
TTTTCTCCCGCTATCAGTTGCATACACGGACGTCGTTCAATTGATTTGCA
TTGCGGTCGGATTGTGGTTGACGGTTCCTTTCTCTTTGACCAATGAAAAC
GTTGAATCGATTGGTGCACGTAAAGAGGAATGGCTCGGCCAATTGTATGG
TGCTAAAGTCGGAAAATGGATTGATTACGCTTTCTTATTGGTACGGATAA
AGTCTTATTAAAATTCAACTGATATAACTTAACTGACTTCTCTTGCGTTC
GTTTACTTTCAATCCATCCTTAGTCTAGCATGCTAGACGATTAATTCAGA
AAGCAAAAAATTATGAAAAGTGAAAGTTTTAGTTAGAAACTGATATTGTA
CCGTAACAATTATCGCATTATCATATAACACCTCTGTCACTGTATTAGAT
GGATCATAAACGACTGTAGTCTAATCCATCCTTTAAGTTTTTGGAATTGT
TTGTCATACTTTGAAAAGTTGTCTTTTTCTTTCTTAGATTTGTGGAGGTA
TTCCATGGCAAGTGTATTTCCAACGTGTATTGTCTTCCAAGTCAGCTCAC
CGTGCTCAAATTCTCTCCTTCGTTGCTGCTTTCGGCTGTATTGTGCTGGC
TATCCCTGCAGTTCTGATCGGTGCCGCCGCCAAAAGCGCTGGTAAGAATC
GTTTCTTATATTAGTATATTGGAAGGACTCTTTAGTCGTAACCAAAATAT
CTGTATCGAGAAGACATTAAAGATGATACATCTCTTTACCTTCAGACTGG
GGAGCAGTAAGTGGGGCAGTGGACGCCAACCTTGTGACCAACAAAACCGG
AGAGTGGGTGATCACGGATACCAGACTGGTCCTCCCCATGGTTCTTCAAT
ACTTAGCTCCTGGATGGGTGTCTTTCATTGGTCTTGGTGCCATCTCAGCT
GCTGTCATGTCTAGTGCTGACTCGTCAGTTTTGTCTGCTAGTTCCATGTT
CGGACATAATATCTACAAGTTGATCATCAGAAAAAATGTAAGCGAAAAAG
AGCATACCTTTGTCTCATTAACCGGTTCAGCTAAATTCCAACAAAGCTGG
AATGTGGTATATTAAATTAATAAAATTTTGTGCAAACTTTTCTGTTTTTT
TTTTGTCATTTGTACTTCTTACCTTAGATAAACTTTCGAATATTATCTTT
CAGGCCAGTGCCAATGAAATTATTTGGGTGATTCGTATTGGTATCATCTT
TGTTGGTATCATGGCAACGCTGGTTGGGTTGACGGTCGACAGCATCTACG
CTTTGTTCCATTTGTGCTCGGACCTGGTCTTTGTCATCCTCTTCCCACAG
CTGGTGGGTGCTGTCCACATCCAAGATGTCAACACGTATGGATCCATATG
TGCTTACATAGTGGGATTGTTCTTACGCATCACCGGTGGAGAAGAATTGA
TCGGGTTCCCGGCTACTTTTAAATATCCTTACTATGACGAGACGTACAGT
AATGGGAAAGGATCACAAAATTTCCCCTTCCGTACCCTAGCTATGATTAT
TTCTTTCATCACGCTCGTCTCTGTTTCCAAATTGGCTTATTATTTGTTCG
ATAATGAAATCTTGGGTGAAAATTACGATTTTTTAGGCGTTTTGGAGCGC
CGACGAAATCTTGCCGGCAAGAAAGGAAGACGAGGTGAGGATGATGCTTT
ACCGCTACAAGAAAAATACAACGGATTCGACGACCCAACTCCTCAACAAA
TCTAAACGTACGTGTCAAAATGATTTGTCAGACATCGCGTGCTACCAATA
TGTATCAATGTAGTTTTCGAATATCTAATGAAAGCTTTTACAAGTTTTCA
GGTCTCCTTAATAACCATGTGAAAAATGGCCAAGTGACTAGGACTGTATC
CGTGATGACCTAGTAAAAGTCTGACTGGCTTTTAAAAGACAGCTGGATAG
ACTGAATAATGCAAAATTGAAATAAGCGTGATGGAGCTCTTTTGAAACAA
GACGCTGAAAAGTTATTAGGGCTGTGTTTAGCATTTTAATTATTTTTTGT
ATAATCTCAAAAGATATTTTACTTTGTATTTTTAATTTGTACTGTGTATT
ATCTCATTTACATGTAGGCATTCATGGAAATATGTACGGTACTTCCTATC
AAATTTTCTTCATTTTTCTTTGGTTTGGTTAACCTCATTTACAGAAAGAA
AGTTTTATACTCTTTAGCGCAACAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033853	XLOC_033853	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_233	supercontig	scaffold_233:675583..680207 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.12286	2.83287	5.63792	11.018	31.0302	16.4433	14.2912	19.0925	1.38618	0.729246	3.6772	6.41731	8.64837	10.3249	0.440741	0.415514	1.89303	3.14764	13.2105	7.09633	7.38106	13.0336	6.79733	6.11439	14.3679	17.5827	10.7322	6.2032	1.56574	3.41654e-07

Blast

[Close]

BLAST of TCONS_00053674 vs. Swiss-Prot (Human)
Match: SC5A7 (High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=1 SV=1)

HSP 1 Score: 485.337 bits (1248), Expect = 7.301e-162
Identity = 284/553 (51.36%), Postives = 380/553 (68.72%), Query Frame = 2

Query:  167 NVAGLISIIIFYLAILGIGLFAAWRKNKHTKENAQTTQDETNEVILAGRTIGMFIGCFTMTATWVGGGYINGTAESVYNDG--LVWAQAPWGYATSLAMGGFFFARKMREAEYITMLDPLQDKYGRVMGAFLYIPAFLGETFWSASILAALGATLTVILGLNMNISVIVSACIAVGYTFFGGLYSVAYTDVVQLICIAVGLWLTVPFSLTNENVESIG------ARKEEWLGQLYGAKVGKWIDYAFLLICGGIPWQVYFQRVLSSKSAHRAQILSFVAAFGCIVLAIPAVLIGAAAKSADWGAVSGAVDANLVTNKTGEWVITDTRLVLPMVLQYLAPGWVSFIGLGXXXXXXXXXXXXXXXXXXXMFGHNIYKLIIRKNASANEXXXXXXXXXXXXXXMATLVGLTVDSIYALFHLCSDLVFVILFPQLVGAVHIQDVNTYGSICAYIVGLFLRITGGEELIGFPATFKYP-YYDETYSNGKGSQNFPFRTLAMIISFITLVSVSKLAYYLFDNEILGENYD-FLGVLERRRNLAGKKGRRGEDDALPLQE 1795
            +V GLI+II+FYL IL +G++AAWR      +N+ + ++ +  +I+ GR IG+ +G FTMTATWVGGGYINGTAE+VY  G  L WAQAP GY+ SL +GG FFA+ MR   Y+TMLDP Q  YG+ MG  L+IPA +GE FW+A+I +ALGAT++VI+ ++M+ISVI+SA IA  YT  GGLYSVAYTDVVQL CI VGLW++VPF+L++  V  IG        ++ WLG +  ++V  W+D   LL+ GGIPWQ YFQRVLSS SA  AQ+LSF+AAFGC+V+AIPA+LIGA   S DW   +      L   KT E    +  ++LP+VLQYL P ++SF GLGA+SAAVMSSADSS+LSASSMF  NIY+L  R+NAS  EI+WV+RI +   G  AT + L   ++Y L++L SDLV++++FPQL+  + ++  NTYG++  Y+ GLFLRITGGE  +       YP YY +   NG  +Q FPF+TLAM+ SF+T + +S LA YLF++  L    D F  V+ R       K    +++ + L E
Sbjct:    4 HVEGLIAIIVFYLLILLVGIWAAWRT-----KNSGSAEERSEAIIVGGRDIGLLVGGFTMTATWVGGGYINGTAEAVYVPGYGLAWAQAPIGYSLSLILGGLFFAKPMRSKGYVTMLDPFQQIYGKRMGGLLFIPALMGEMFWAAAIFSALGATISVIIDVDMHISVIISALIATLYTLVGGLYSVAYTDVVQLFCIFVGLWISVPFALSHPAVADIGFTAVHAKYQKPWLGTVDSSEVYSWLDSFLLLMLGGIPWQAYFQRVLSSSSATYAQVLSFLAAFGCLVMAIPAILIGAIGASTDWNQTA----YGLPDPKTTE----EADMILPIVLQYLCPVYISFFGLGAVSAAVMSSADSSILSASSMFARNIYQLSFRQNASDKEIVWVMRITVFVFGASATAMALLTKTVYGLWYLSSDLVYIVIFPQLLCVLFVKGTNTYGAVAGYVSGLFLRITGGEPYLYLQPLIFYPGYYPD--DNGIYNQKFPFKTLAMVTSFLTNICISYLAKYLFESGTLPPKLDVFDAVVARHSEENMDKTILVKNENIKLDE 541

The following BLAST results are available for this feature:

BLAST of TCONS_00053674 vs. Swiss-Prot (Human)

BLAST of TCONS_00053674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC5A7	7.301e-162	51.36	High affinity choline transporter 1 OS=Homo sapien...	[more]

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TCONS_00053674 (transcript) - C. hemisphaerica