TCONS_00053675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053675
Unique NameTCONS_00053675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053675 ID=TCONS_00053675|Name=TCONS_00053675|organism=Clytia hemisphaerica|type=transcript|length=2205bp
GGATGTACAAAATAGTTTTGCTGATGATGTTGGAGAAATTTAATTGATCA
TCATGGCTGATTTGAATGTGGCAGGTTTGATCAGTATCATCATCTTTTAT
TTGGCTATCCTTGGCATCGGTTTATTTGCTGCCTGGAGAAAGAACAAACA
CACGAAAGAGAATGCGCAAACCACACAAGACGAAACGAATGAAGTTATTT
TAGCTGGAAGAACTATTGGGATGTTTATTGGTTGCTTCACTATGACTGCA
ACATGGGTTGGTGGTGGTTACATCAATGGAACAGCAGAGTCAGTGTACAA
TGATGGTCTGGTCTGGGCTCAAGCACCATGGGGTTATGCTACCAGTTTAG
CGATGGGTGGTTTCTTTTTTGCTCGCAAAATGAGAGAAGCGGAATATATC
ACCATGTTGGACCCTCTGCAAGACAAGTACGGTCGTGTGATGGGTGCTTT
CCTTTACATTCCTGCTTTCCTTGGTGAAACATTTTGGTCTGCATCTATCC
TGGCAGCTCTTGGTGCAACATTGACAGTTATCTTGGGGTTGAACATGAAT
ATTTCCGTCATCGTGTCGGCGTGTATTGCTGTCGGCTACACCTTTTTTGG
TGGACTTTATTCAGTTGCATACACGGACGTCGTTCAATTGATTTGCATTG
CGGTCGGATTGTGGTTGACGGTTCCTTTCTCTTTGACCAATGAAAACGTT
GAATCGATTGGTGCACGTAAAGAGGAATGGCTCGGCCAATTGTATGGTGC
TAAAGTCGGAAAATGGATTGATTACGCTTTCTTATTGatTTGTGGAGGTA
TTCCATGGCAAGTGTATTTCCAACGTGTATTGTCTTCCAAGTCAGCTCAC
CGTGCTCAAATTCTCTCCTTCGTTGCTGCTTTCGGCTGTATTGTGCTGGC
TATCCCTGCAGTTCTGATCGGTGCCGCCGCCAAAAGCGCTGACTGGGGAG
CAGTAAGTGGGGCAGTGGACGCCAACCTTGTGACCAACAAAACCGGAGAG
TGGGTGATCACGGATACCAGACTGGTCCTCCCCATGGTTCTTCAATACTT
AGCTCCTGGATGGGTGTCTTTCATTGGTCTTGGTGCCATCTCAGCTGCTG
TCATGTCTAGTGCTGACTCGTCAGTTTTGTCTGCTAGTTCCATGTTCGGA
CATAATATCTACAAGTTGATCATCAGAAAAAATGCCAGTGCCAATGAAAT
TATTTGGGTGATTCGTATTGGTATCATCTTTGTTGGTATCATGGCAACGC
TGGTTGGGTTGACGGTCGACAGCATCTACGCTTTGTTCCATTTGTGCTCG
GACCTGGTCTTTGTCATCCTCTTCCCACAGCTGGTGGGTGCTGTCCACAT
CCAAGATGTCAACACGTATGGATCCATATGTGCTTACATAGTGGGATTGT
TCTTACGCATCACCGGTGGAGAAGAATTGATCGGGTTCCCGGCTACTTTT
AAATATCCTTACTATGACGAGACGTACAGTAATGGGAAAGGATCACAAAA
TTTCCCCTTCCGTACCCTAGCTATGATTATTTCTTTCATCACGCTCGTCT
CTGTTTCCAAATTGGCTTATTATTTGTTCGATAATGAAATCTTGGGTGAA
AATTACGATTTTTTAGGCGTTTTGGAGCGCCGACGAAATCTTGCCGGCAA
GAAAGGAAGACGAGGTGAGGATGATGCTTTACCGCTACAAGAAAAATACA
ACGGATTCGACGACCCAACTCCTCAACAAATCTAAACGTACGTGTCAAAA
TGATTTGTCAGACATCGCGTGCTACCAATATGTATCAATGTAGTTTTCGA
ATATCTAATGAAAGCTTTTACAAGTTTTCAGGTCTCCTTAATAACCATGT
GAAAAATGGCCAAGTGACTAGGACTGTATCCGTGATGACCTAGTAAAAGT
CTGACTGGCTTTTAAAAGACAGCTGGATAGACTGAATAATGCAAAATTGA
AATAAGCGTGATGGAGCTCTTTTGAAACAAGACGCTGAAAAGTTATTAGG
GCTGTGTTTagcattttaattattttttgtataatctcaaaagatatttt
actttgtatttttaatttGTACTGTGTATTATCTCATTTACATGTAGGCA
TTCATGGAAATATGTACGGTACTTCCTAtcaaattttcttcatttttctt
tggtttggtTAACCTCATTTACAGAAAGAAAGTTTTATACTCTTTAGCGC
AACAC
Run BLAST on NCBI

transcript from alignment at scaffold_233:675583..683905-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053675 ID=TCONS_00053675|Name=TCONS_00053675|organism=Clytia hemisphaerica|type=transcript|length=8323bp|location=Sequence derived from alignment at scaffold_233:675583..683905- (Clytia hemisphaerica)
GGATGTACAAAATAGTTTTGCTGATGATGTTGGTACATTAGAAGCATCAA
TACTTTCTGTCTTTGGTTGTATCATGAACATGGTTGTACGTAATCCAATT
TAGTGAATTGGATTGATTGAGTTTGCGAAAGGCGAAAATACACGTTTTTT
TTAAGTAACTTGAGGCTGAAAATGGTCTGAGAAATAAGGAATTGTTAAGG
AACTGCTCAGGCTGAGAATAAAAAATCAAGTTAAGGAACAGCAAGAGTTC
AATTTGAATTTGTACACATTTACAATGACCTAAATAAAAAGACGGAAAAT
ATTGCTGAAACGCCTTTCAATATGTCAAAAAGACAAAAAATGCTGATAAA
GAAGCTACACAATTAGCAAATCCAAACTTAACAGCTAATTAACTAAGGAA
CTCGATAAGGAACTTTGAAGCTGAAACTCTCTGGCAAGATAAGGAACTCC
AGGCTCGGAGCCAAGTTAAGGTTCCTTATAAAAAAAAAGTGTATTACGTG
AGAGTACTATAATCTAACTTTGATGAAGTTTCGATATAGATTTTCTTTCA
TACAAGCTATCTTTTCATTATGTTGTGGTATTAAGGCAGGAATACACGTT
TTTTTTAAGAACAAACTATATAAGAACATAAGGCTTCAATGGCCAAAATG
TTAAGAACAAGTTTTAAGAACATTTTAAGACTTTGTAGACTCTAAAATGG
TCAATTTCTTAAGAAAATGGACAGAAATACTCACAAAATGGAGAAAATCA
GAACGTTAAGAACATTTTTAGGCTTAAAATCAAAAAAATAAAGAACAACC
CAAGGCTTCAAAATTTTGGATGTTCTTATAAAAAGAACATGTAAGGTTTT
AAATTAGATCAAAAGATTGATTTCTATCAATTTTAATATCATCATGTGAT
GGGGCGACCCCTTTTTTTGGATATCAGTCATTTTCAGCTGCATTAGTGTA
TGTTAGTTGTTTGGCGAAAGTGCTGTTTTCATTGAGGAAGTGTAGCGAAA
TCTAATTTTTTCGTAAGTGGACATGTCTCGCCGTCACGATTCTCTATCTA
TTTGGTTTAGTTACAGCAGGCCATCCGGCCCATTCTCGCAACTGTGTTAA
TGCAATTATGGGTCCTGTCAGCAACCTTGGACTGACTATCCAATCCCCCT
CCCATGACAGTAGCGTAGCCAAGAGGGGCGCAAAATTTGTGTAGGAGAGC
AGATTTTTATGCCGTTATAATTATCTTTTAATAACATGAATAGATAATTA
CAGTGTCATAAAAACCTGCTCTCCTACACAAATTTTGCGCCCCTCTTGGC
TACGCTACTGCATGGCATCGGTTGACTCGGGTGAAGTTCGTTCACTTGCC
AAGTAGGAATGCTCAGGAATCAAAGTTGATGACGACTATAACAACCTACT
CCCATCCACAGACTTTGAATCGGGTTTTTGAATATGAAACTTTAAAAGTT
TGAAGAGGAATAATTAGAATTTTTAATATTTCACATTAAAATGTTTGAAC
TCTCGGAAGATTCTCGCTTCCAACATTTTTGTTTATCTTTGATAGTTTTT
TGTTAAAGGTTTTTGTGGTTTTGAGTTATGCCATTTATATGGGGCCTATA
TGTGTCAAACTGTAAAGATTTTTTTGATAATTTGTTTAATCTTACGATTT
CGGAAATTTATAGGCTTATCATAGCTGTTCGTTAAAAAATGTCTGCACGC
CGAGTTGATAGATTTCAGCTGGAAAATCAAATAATAAATATAATTTCTGG
TGAGGTTTCGTGCACCAGAGAGGTTAGCGTGGCAGCGTGATATCCGTATT
AGGGATTGGTTATTTAAATTGTCCTGAAATTGACATACTCATTACATGCT
GCGTTGCACTTAACACGCTGGTAAAAAAGTAATATCAATTCGTTTAGGGA
TATGTTTAATAACCTTCTTTATAGTTTGACGTCATTTTGATCACAATTCA
TTGCTCTCTTGCCTGTTATCCCATCTTATAATACAATAGTGAAGTCACTG
ATTGTATTATGATAGAACAGGGTATGCGTGGACGCACGCATTAAGCAATT
GAATAAGGATTTGTTGTAGTAATATGTCATAGGAAATGAGGGGTTGTGTT
AAAATTTGACGAGAGAATTTTTTTATAAATACTGTAGGAAATACTTCCAA
CTGTGATTAAAATGTTTCGAATTATCAATATTTCTACACAATTTTTTTCT
CGATTGAGTAGTAAAATGGGGGAGTTGTTTGATGTGGATATGATATGTTG
TACATTTGCACATCAATGAGTTAATCTAGCGGGAAACACTTCAGAAAAGT
TGATAGAGTTAGTAGAGGAACTTTCTTCGATACGTGGTCGCGTAAAAGAA
TCCGATATTGAAATAAATTACAATTCAGTTTGAATACAGTTACCAATATA
GTTAACTGTTTGTTTCATCACGAATGGAAAAGACCGTGAATTCATATTTT
AATGTACTGAACTGGTTTTATCAGCACTAGTGATTTCACGACTTTTTCTG
TATTATTCCATTTAAAAAATATTAACTTTAAAATAGCTTCTCTTGTTCCA
ATCTTAGTTTTAATTAACTTTTATAAAATTCTTTCAATACAAAGACCACG
CCCATTTATTTTGACCCAAGTTTTCTTAGATTTGAATGTTTTTCACTGGG
TGAAAGTAAAGAATTTTCTTATAAAATGTTATCTAAGTGTATCAATAATT
TAAAGAATTGGTCTGCCTGTTTTAAACACAATCATAGAGGGACGATACTT
TAACCTTGTAGTACTTTAACTAGTACTTATTTTTTGCCCGATTGTTGATC
CTCCATCTTTTACTTTTCTCATATTTTGATTGTAAACGAGACTAAAATAT
AATTTCTTCTCNATTATAAAAGAACAGGGTATGCGTGGACGCACGCATTA
AGCAATTGAATAAGGATTTGTTGTAGTAATATGTCATAGGAAATGAGGGG
TTGTGTTAAAATTTGACGAGAGAATTTTTTTATAAATACTGTAGGAAATA
CTTCCAACTGTGATTAAAATGTTTCGAATTATCAATATTTCTACACAATT
TTTTTCTCGATTGAGTAGTAAAATGGGGGAGTTGTTTGATGTGGATATGA
TATGTTGTACATTTGCACATCAATGAGTTAATCTAGCGGGAAACACTTCA
GAAAAGTTGATAGAGTTAGTAGAGGAACTTTCTTCGATACGTGGTCGCGT
AAAAGAATCCGATATTGAAATAAATTACAATTCAGTTTGAATACAGTTAC
CAATATAGTTAACTGTTTGTTTCATCACGAATGGAAAAGACCGTGAATTC
ATATTTTAATGTACTGAACTGGTTTTATCAGCACTAGTGATTTCACGACT
TTTTCTGTATTATTCCATTTAAAAAATATTAACTTTAAAATAGCTTCTCT
TGTTCCAATCTTAGTTTTAATTAACTTTTATAAAATTCTTTCAATACAAA
GACCACGCCCATTTATTTTGACCCAAGTTTTCTTAGATTTGAATGTTTTT
CACTGGGTGAAAGTAAAGAATTTTCTTATAAAATGTTATCTAAGTGTATC
AATAATTTAAAGAATTGGTCTGCCTGTTTTAAACACAATCATAGAGGGAC
GATACTTTAACCTTGTAGTACTTTAACTAGTACTTATTTTTTGCCCGATT
GTTGATCCTCCATCTTTTACTTTTCTCATATTTTGATTGTAAACGAGACT
AAAATATAATTTCTTCTCCTCTTCTCCTCATTCTTCATTCAGTCGTTTTC
GAGTAAGGCTATTCTTTTCTGTTTGAATGAAAATTGTGGGAAGGTCCTTT
TTGCTTCAGATTCTCAAAGAACTACATTTTAGGTATGTTTTTCACTTTCT
TTATCAAAATTACTAGAGCCAAAAGTTGTTTATTAGCAGTGCCTCTAAAT
TACTTTATATATTTTTTGAACCACACCCAATTTCTCTTTCCGGAGAAAAT
TTTTTGACATTTTTTATTTCGTTGTTATCACTTTAATAATGGTTGACAAT
TAGTACTTGGACATGATTCTTCTTGCTGCCCTGTTAATGATTCATTATGA
ACAACCTTAGCGTTTGCAAACATGTTGGATGGGCGTTCCAATTCACCGGC
AGACGAGCTCACAATCTACTCTTTGGTCGTCATGGAAACTGCTCGAAAGC
CGCGCCTCGAAACGCCATAGGAGGTATTTAATCAAGGGAAGACAGGGTGT
ATAAAACTCGTACCATATTAATCTGGGAATAACTCAGATAACCTGAAAAT
AGCATTTTTCAGCTTTTTCAGTTCATGTCATCGACTACATCAGTTAAATC
ACTAGATTTAGAAAATCTTTGTAAATTTAGTAAATCTTTGTAGTCAGACG
TAGTTTGTCTAGTGTTTTTATCAATTTATCAATGGAGAAAACAATAGTTA
ATTCTAAACAGAGTTTTGGGCAATAAATGTCAATAGGATAAAGCTTTGTG
GAGTGCTCAGATTCCAGACGGTCTAGGAAGATTCATCTGAAGTTATGCAG
TAAAATCTTTATTCAGAGTTGAGAAGAACAGATCCAAAGCATACTATTTA
ATTCTACCTGGTTACAATATTCACTACAATTAAAAAACAAAACCATTATT
CGCTATCTGCCATCTAAAGAAAGCTCTTGTACTTTCAGGAGAAATTTAAT
TGATCATCATGGCTGATTTGAATGTGGCAGGTTTGATCAGTATCATCATC
TTTTATTTGGCTATCCTTGGCATCGGTTTATTTGCTGCCTGGAGAAAGAA
CAAACACACGAAAGAGAATGCGCAAACCACACAAGACGAAACGAATGAAG
TTATTTTAGCTGGAAGAACTATTGGGATGTTTATTGGTTGCTTCACTATG
ACTGGTATGTCGCCTTTCCTTTCGTCTACCGTCACACTGAACAATCTCTA
TGGTGACTAAAAATATTTGTGACAGTGTTGTTTCCAAATCAAAATGAGCG
GATGAATTTTGAAACCTTTTCAATATATCACAAAAAAAGGAGTTCTCAAC
CTCTGTAGCTTTTTAGACGTCTTTCTTAAGATCTCTTCGATTGCATTATG
GAGCAAAAAAGCAGGTCCGAAAAGATTCATTCGAGCAGCAATATTCAGAG
CGACAATGGTTATTGCATTATGGATTAAGTGAATTTTCGGAGTGAATCTT
TATGCTCCATTTTTCTGGTTCATTAGCATTCAAATCTTTGATATATTTTA
GCAACATGGGTTGGTGGTGGTTACATCAATGGAACAGCAGAGTCAGTGTA
CAATGATGGTCTGGTCTGGGCTCAAGCACCATGGGGTTATGCTACCAGTT
TAGCGATGGGTACGTATCTTCTAGCCTAGATATCTAAGCCAGATTGATTC
CGTCACTTGGTAGAATCTGATGGTAAGTTGTGACTGGATATCTGGTAAAC
TTAAAATTCCGTACATCATAAAAATCATTAAAGCACCGATAACGCTATAT
TGCGGTCAGCCATATCTTGGCCTTGTAAAAACTGGCTTGATTAACCAGGC
TACCTATCTTCTTCATTGTCTCGTGTAAAGATTTCTTCTCGATACTGTTT
GTGACAAAGGGACATTTCTACAACTTTAACTTGTTTCATAATTTCTTTCA
GGTGGTTTCTTTTTTGCTCGCAAAATGAGAGAAGCGGAATATATCACCAT
GTTGGACCCTCTGCAAGACAAGTACGGTCGTGTGATGGGTGCTTTCCTTT
ACATTCCTGCTTTCCTTGGTGAAACATTTTGGTCTGCATCTATCCTGGCA
GCTCTTGGTGCAACATTGACAGTTATCTTGGGGTTGAACATGAATATTTC
CGTCATCGTGTCGGCGTGTATTGCTGTCGGCTACACCTTTTTTGGTGGAC
TTTATTCAGGTATAGGATGAAGCAAATCTTTTACTTATGTATGATGTGAA
TGTTGTCACATATTTCATACCAGGACAGTGTCTCGCTATTGTTATATTAT
GCTGATATAAGCAAAAAGTGTTTTGCTTTTCCTCTTTCTGACCAATCTTT
CTACACATTCGTGTCAATCTAATGTGAAAAAGCTTGTGAATTAAAATTGA
TGAGTAAGCAAACGACATCACTCTTATTTAAAAACAAAACCTTTAAAAGT
AAAGTTAAAGTATTCCAGAAATCGAATGGACTTAATATTTTTATTGATTT
TTCTCCCGCTATCAGTTGCATACACGGACGTCGTTCAATTGATTTGCATT
GCGGTCGGATTGTGGTTGACGGTTCCTTTCTCTTTGACCAATGAAAACGT
TGAATCGATTGGTGCACGTAAAGAGGAATGGCTCGGCCAATTGTATGGTG
CTAAAGTCGGAAAATGGATTGATTACGCTTTCTTATTGGTACGGATAAAG
TCTTATTAAAATTCAACTGATATAACTTAACTGACTTCTCTTGCGTTCGT
TTACTTTCAATCCATCCTTAGTCTAGCATGCTAGACGATTAATTCAGAAA
GCAAAAAATTATGAAAAGTGAAAGTTTTAGTTAGAAACTGATATTGTACC
GTAACAATTATCGCATTATCATATAACACCTCTGTCACTGTATTAGATGG
ATCATAAACGACTGTAGTCTAATCCATCCTTTAAGTTTTTGGAATTGTTT
GTCATACTTTGAAAAGTTGTCTTTTTCTTTCTTAGATTTGTGGAGGTATT
CCATGGCAAGTGTATTTCCAACGTGTATTGTCTTCCAAGTCAGCTCACCG
TGCTCAAATTCTCTCCTTCGTTGCTGCTTTCGGCTGTATTGTGCTGGCTA
TCCCTGCAGTTCTGATCGGTGCCGCCGCCAAAAGCGCTGGTAAGAATCGT
TTCTTATATTAGTATATTGGAAGGACTCTTTAGTCGTAACCAAAATATCT
GTATCGAGAAGACATTAAAGATGATACATCTCTTTACCTTCAGACTGGGG
AGCAGTAAGTGGGGCAGTGGACGCCAACCTTGTGACCAACAAAACCGGAG
AGTGGGTGATCACGGATACCAGACTGGTCCTCCCCATGGTTCTTCAATAC
TTAGCTCCTGGATGGGTGTCTTTCATTGGTCTTGGTGCCATCTCAGCTGC
TGTCATGTCTAGTGCTGACTCGTCAGTTTTGTCTGCTAGTTCCATGTTCG
GACATAATATCTACAAGTTGATCATCAGAAAAAATGTAAGCGAAAAAGAG
CATACCTTTGTCTCATTAACCGGTTCAGCTAAATTCCAACAAAGCTGGAA
TGTGGTATATTAAATTAATAAAATTTTGTGCAAACTTTTCTGTTTTTTTT
TTGTCATTTGTACTTCTTACCTTAGATAAACTTTCGAATATTATCTTTCA
GGCCAGTGCCAATGAAATTATTTGGGTGATTCGTATTGGTATCATCTTTG
TTGGTATCATGGCAACGCTGGTTGGGTTGACGGTCGACAGCATCTACGCT
TTGTTCCATTTGTGCTCGGACCTGGTCTTTGTCATCCTCTTCCCACAGCT
GGTGGGTGCTGTCCACATCCAAGATGTCAACACGTATGGATCCATATGTG
CTTACATAGTGGGATTGTTCTTACGCATCACCGGTGGAGAAGAATTGATC
GGGTTCCCGGCTACTTTTAAATATCCTTACTATGACGAGACGTACAGTAA
TGGGAAAGGATCACAAAATTTCCCCTTCCGTACCCTAGCTATGATTATTT
CTTTCATCACGCTCGTCTCTGTTTCCAAATTGGCTTATTATTTGTTCGAT
AATGAAATCTTGGGTGAAAATTACGATTTTTTAGGCGTTTTGGAGCGCCG
ACGAAATCTTGCCGGCAAGAAAGGAAGACGAGGTGAGGATGATGCTTTAC
CGCTACAAGAAAAATACAACGGATTCGACGACCCAACTCCTCAACAAATC
TAAACGTACGTGTCAAAATGATTTGTCAGACATCGCGTGCTACCAATATG
TATCAATGTAGTTTTCGAATATCTAATGAAAGCTTTTACAAGTTTTCAGG
TCTCCTTAATAACCATGTGAAAAATGGCCAAGTGACTAGGACTGTATCCG
TGATGACCTAGTAAAAGTCTGACTGGCTTTTAAAAGACAGCTGGATAGAC
TGAATAATGCAAAATTGAAATAAGCGTGATGGAGCTCTTTTGAAACAAGA
CGCTGAAAAGTTATTAGGGCTGTGTTTAGCATTTTAATTATTTTTTGTAT
AATCTCAAAAGATATTTTACTTTGTATTTTTAATTTGTACTGTGTATTAT
CTCATTTACATGTAGGCATTCATGGAAATATGTACGGTACTTCCTATCAA
ATTTTCTTCATTTTTCTTTGGTTTGGTTAACCTCATTTACAGAAAGAAAG
TTTTATACTCTTTAGCGCAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033853XLOC_033853Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053675-exon-scaffold_233-1575043694:683874..683905TCONS_00053675-exon-scaffold_233-1575043694:683874..683905Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1575043694:679052..679267TCONS_00053675-exon-scaffold_233-1575043694:679052..679267Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1575043694:678597..678704TCONS_00053675-exon-scaffold_233-1575043694:678597..678704Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1575043694:678047..678304TCONS_00053675-exon-scaffold_233-1575043694:678047..678304Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1575043694:677568..677740TCONS_00053675-exon-scaffold_233-1575043694:677568..677740Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1575043694:677117..677270TCONS_00053675-exon-scaffold_233-1575043694:677117..677270Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1575043694:676771..677012TCONS_00053675-exon-scaffold_233-1575043694:676771..677012Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1575043694:675583..676604TCONS_00053675-exon-scaffold_233-1575043694:675583..676604Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1510915933:683874..683905TCONS_00053675-exon-scaffold_233-1510915933:683874..683905Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1510915933:679052..679267TCONS_00053675-exon-scaffold_233-1510915933:679052..679267Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1510915933:678597..678704TCONS_00053675-exon-scaffold_233-1510915933:678597..678704Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1510915933:678047..678304TCONS_00053675-exon-scaffold_233-1510915933:678047..678304Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1510915933:677568..677740TCONS_00053675-exon-scaffold_233-1510915933:677568..677740Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1510915933:677117..677270TCONS_00053675-exon-scaffold_233-1510915933:677117..677270Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1510915933:676771..677012TCONS_00053675-exon-scaffold_233-1510915933:676771..677012Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1510915933:675583..676604TCONS_00053675-exon-scaffold_233-1510915933:675583..676604Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1491911889:683874..683905TCONS_00053675-exon-scaffold_233-1491911889:683874..683905Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1491911889:679052..679267TCONS_00053675-exon-scaffold_233-1491911889:679052..679267Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1491911889:678597..678704TCONS_00053675-exon-scaffold_233-1491911889:678597..678704Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1491911889:678047..678304TCONS_00053675-exon-scaffold_233-1491911889:678047..678304Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1491911889:677568..677740TCONS_00053675-exon-scaffold_233-1491911889:677568..677740Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1491911889:677117..677270TCONS_00053675-exon-scaffold_233-1491911889:677117..677270Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1491911889:676771..677012TCONS_00053675-exon-scaffold_233-1491911889:676771..677012Clytia hemisphaericaexon
TCONS_00053675-exon-scaffold_233-1491911889:675583..676604TCONS_00053675-exon-scaffold_233-1491911889:675583..676604Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:675583..683905 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
206.002	179.748	310.879	261.373	0.0356057	1.4734e-06	8.94364	1.84938e-05	82.8304	115.59	89.661	66.8173	161.502	145.517	33.3294	35.1019	65.1087	108.817	77.5143	74.3767	129.954	137.661	122.82	110.453	0.000106886	3.62418e-06	112.314	120.529	40.7388	50.2589
Blast
[Close]
BLAST of TCONS_00053675 vs. Swiss-Prot (Human)
Match: SC5A7 (High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=1 SV=1)

HSP 1 Score: 485.337 bits (1248), Expect = 2.589e-162
Identity = 284/553 (51.36%), Postives = 380/553 (68.72%), Query Frame = 2 
Query:   65 NVAGLISIIIFYLAILGIGLFAAWRKNKHTKENAQTTQDETNEVILAGRTIGMFIGCFTMTATWVGGGYINGTAESVYNDG--LVWAQAPWGYATSLAMGGFFFARKMREAEYITMLDPLQDKYGRVMGAFLYIPAFLGETFWSASILAALGATLTVILGLNMNISVIVSACIAVGYTFFGGLYSVAYTDVVQLICIAVGLWLTVPFSLTNENVESIG------ARKEEWLGQLYGAKVGKWIDYAFLLICGGIPWQVYFQRVLSSKSAHRAQILSFVAAFGCIVLAIPAVLIGAAAKSADWGAVSGAVDANLVTNKTGEWVITDTRLVLPMVLQYLAPGWVSFIGLGXXXXXXXXXXXXXXXXXXXMFGHNIYKLIIRKNASANEXXXXXXXXXXXXXXMATLVGLTVDSIYALFHLCSDLVFVILFPQLVGAVHIQDVNTYGSICAYIVGLFLRITGGEELIGFPATFKYP-YYDETYSNGKGSQNFPFRTLAMIISFITLVSVSKLAYYLFDNEILGENYD-FLGVLERRRNLAGKKGRRGEDDALPLQE 1693
            +V GLI+II+FYL IL +G++AAWR      +N+ + ++ +  +I+ GR IG+ +G FTMTATWVGGGYINGTAE+VY  G  L WAQAP GY+ SL +GG FFA+ MR   Y+TMLDP Q  YG+ MG  L+IPA +GE FW+A+I +ALGAT++VI+ ++M+ISVI+SA IA  YT  GGLYSVAYTDVVQL CI VGLW++VPF+L++  V  IG        ++ WLG +  ++V  W+D   LL+ GGIPWQ YFQRVLSS SA  AQ+LSF+AAFGC+V+AIPA+LIGA   S DW   +      L   KT E    +  ++LP+VLQYL P ++SF GLGA+SAAVMSSADSS+LSASSMF  NIY+L  R+NAS  EI+WV+RI +   G  AT + L   ++Y L++L SDLV++++FPQL+  + ++  NTYG++  Y+ GLFLRITGGE  +       YP YY +   NG  +Q FPF+TLAM+ SF+T + +S LA YLF++  L    D F  V+ R       K    +++ + L E
Sbjct:    4 HVEGLIAIIVFYLLILLVGIWAAWRT-----KNSGSAEERSEAIIVGGRDIGLLVGGFTMTATWVGGGYINGTAEAVYVPGYGLAWAQAPIGYSLSLILGGLFFAKPMRSKGYVTMLDPFQQIYGKRMGGLLFIPALMGEMFWAAAIFSALGATISVIIDVDMHISVIISALIATLYTLVGGLYSVAYTDVVQLFCIFVGLWISVPFALSHPAVADIGFTAVHAKYQKPWLGTVDSSEVYSWLDSFLLLMLGGIPWQAYFQRVLSSSSATYAQVLSFLAAFGCLVMAIPAILIGAIGASTDWNQTA----YGLPDPKTTE----EADMILPIVLQYLCPVYISFFGLGAVSAAVMSSADSSILSASSMFARNIYQLSFRQNASDKEIVWVMRITVFVFGASATAMALLTKTVYGLWYLSSDLVYIVIFPQLLCVLFVKGTNTYGAVAGYVSGLFLRITGGEPYLYLQPLIFYPGYYPD--DNGIYNQKFPFKTLAMVTSFLTNICISYLAKYLFESGTLPPKLDVFDAVVARHSEENMDKTILVKNENIKLDE 541
The following BLAST results are available for this feature:
BLAST of TCONS_00053675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC5A72.589e-16251.36High affinity choline transporter 1 OS=Homo sapien... [more]
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