TCONS_00053729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053729
Unique NameTCONS_00053729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053729 ID=TCONS_00053729|Name=TCONS_00053729|organism=Clytia hemisphaerica|type=transcript|length=735bp
TTATGATCTCTTTTTTGAGCTACTCAATGAAGAAGTTGAACGTTTAAACT
TATGATAGAAATTATTGTATCAGAAAAGGCAATTAAATGATAAATACTCA
GAGGTATATAAAGTATCAATTTCAAATTATGTTTGTTCTTTTCGATACAA
ACGGGATGTTATCCTTTTACTCTTGATTTTTATTTATAGATTAGAAAAAG
TTTGCAAAGCTTGACCTTCCCAGCAAGAGAAATTTGAAGAGAGTAAAACA
ggggaaaatatcaaaataaaactaACTGTAGAAAACCATCTTTGATAAAT
CGATAAACACTTTGTATTATAGAATGGACGATCAAGTTTCTTGGGACGAC
ACTGAAAAAACAAAACCAGCCTTCAAAAACCCTAGgaaaaaagactttca
aaataaatatcgTTAATGACAAGAAACTCAATTGAAGACAACGGGGATAT
ATAATCCCGAAGCAGAAAAAGCCAATTTACCACAAACTATATGGTTGTAG
GGGGCTTTTAATTTAGCATTATTTTAGCAAAAGTTTTGTGATTTTCGCAA
AAGTGAATGCTCGCGAAAAAATCTTGACAAAAtggaaaatctgtaaaact
tctaTCTTAAAATTAAATGCGTAACATTTATGGAATTTTTCAGGCTGTTA
AAGACTCATAAGtcaagaaaaatcttttcgtgttaaaatttcatattttc
aatttcattttttactcATGGGAAAGTTTGTATTT
Run BLAST on NCBI

transcript from alignment at scaffold_233:501131..501865

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053729 ID=TCONS_00053729|Name=TCONS_00053729|organism=Clytia hemisphaerica|type=transcript|length=735bp|location=Sequence derived from alignment at scaffold_233:501131..501865 (Clytia hemisphaerica)
AAATACAAACTTTCCCATgagtaaaaaatgaaattgaaaatatgaaattt
taacacgaaaagatttttcttgaCTTATGAGTCTTTAACAGCCTGAAAAA
TTCCATAAATGTTACGCATTTAATTTTAAGAtagaagttttacagatttt
ccaTTTTGTCAAGATTTTTTCGCGAGCATTCACTTTTGCGAAAATCACAA
AACTTTTGCTAAAATAATGCTAAATTAAAAGCCCCCTACAACCATATAGT
TTGTGGTAAATTGGCTTTTTCTGCTTCGGGATTATATATCCCCGTTGTCT
TCAATTGAGTTTCTTGTCATTAAcgatatttattttgaaagtcttttttc
CTAGGGTTTTTGAAGGCTGGTTTTGTTTTTTCAGTGTCGTCCCAAGAAAC
TTGATCGTCCATTCTATAATACAAAGTGTTTATCGATTTATCAAAGATGG
TTTTCTACAGTtagttttattttgatattttccccTGTTTTACTCTCTTC
AAATTTCTCTTGCTGGGAAGGTCAAGCTTTGCAAACTTTTTCTAATCTAT
AAATAAAAATCAAGAGTAAAAGGATAACATCCCGTTTGTATCGAAAAGAA
CAAACATAATTTGAAATTGATACTTTATATACCTCTGAGTATTTATCATT
TAATTGCCTTTTCTGATACAATAATTTCTATCATAAGTTTAAACGTTCAA
CTTCTTCATTGAGTAGCTCAAAAAAGAGATCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033892XLOC_033892Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053729-exon-scaffold_233-1491911889:501131..501865TCONS_00053729-exon-scaffold_233-1491911889:501131..501865Clytia hemisphaericaexon
TCONS_00053729-exon-scaffold_233-1510915933:501131..501865TCONS_00053729-exon-scaffold_233-1510915933:501131..501865Clytia hemisphaericaexon
TCONS_00053729-exon-scaffold_233-1575043694:501131..501865TCONS_00053729-exon-scaffold_233-1575043694:501131..501865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:501131..501865 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.337241	0.573623	0.494626	0.597716	0.92767	0.306124	0.109531	0.0811818	0.36676	0.0704022	0.068334	0.0703453	0.966599	0.850826	3.10224	3.82239	0.707549	1.58536	0.361804	0.923309	0.521702	0.381702	0.399841	0.281234	0	0	0.28124	0.603481	0.0748622	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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