TCONS_00053738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053738
Unique NameTCONS_00053738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length823

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053738 ID=TCONS_00053738|Name=TCONS_00053738|organism=Clytia hemisphaerica|type=transcript|length=823bp
GAAAGTTAAAGGATCAAGATCGCGAAAGAAAGAATGCTGCAAACAGAAAG
GCAGCTTAAGACAGAAAATCTAACGAGAATGAAGTTGTTTAGGGTTGTTA
GCGTTTGGGTTAGGGTTGGCAAAGAAAAACTATAGAGCAAAACAGAAAGA
GTTGAAAAGGTTGCAAACCAGAACTGATAAGACTTTTTCCACTCCACAAA
AATCTATTGTAAAGAATAAGATGAGACGCTTGAGAAgatcttatgaaaaa
aataatacaagCACCGGTGAACGGTCATCTTCATCAAATAATGAACACTC
CTCTTCTTCAACAAGCTCCAGTACCCAAAATGAAGCAGTGGAGCCCAAGT
CCATCTCAGAAGAAGAAAGTAAAATCTAAACTGGTGCATGATGGTCTCCC
AGTTGGGCTTTAACACCAAAATGAGGCAAGAGCTTGGGGTAAATCTTTTG
AACGTTTCATTTAACTCAGAAAACGAAGCTTTAACTGAGTTACAAGAACT
AGTAAGAAAGTTTTTTCCACGAGATGATGTCTCACGTATGTGTACGgata
caaaaaaatgaagaaaaacccTGCAGATCCCGACGAGATCCTGTCCCTCA
GATATCGTTTGTGTTCAATTTCTTCATTATTTGAGAAATTCAAGGCTGAA
AACTCCAACGAGTgcattttatcatatttttcacaaaatcgcCCTTTCAA
TGTGGTGAAGCCTAACACAAACGATTGGTGAACCTGTCTTTGTGTAATGT
GCTTGAATCCCGAAATAAAACTTGAGGCACTAAGCAAATTCACAAAACGC
ACTGACATAAGATGGAATGACAC
Run BLAST on NCBI

protein sequence of TCONS_00053738-protein

>TCONS_00053738-protein ID=TCONS_00053738-protein|Name=TCONS_00053738-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
VSFHLMSVRFVNLLSASSFISGFKHITQRQVHQSFVLGFTTLKGRFCEKY
DKMHSLEFSALNFSNNEEIEHKRYLRDRISSGSAGFFFIFLYPYTYVRHH
LVEKTFLLVLVTQLKLRFLS
Run BLAST on NCBI

transcript from alignment at scaffold_233:666801..667623

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053738 ID=TCONS_00053738|Name=TCONS_00053738|organism=Clytia hemisphaerica|type=transcript|length=823bp|location=Sequence derived from alignment at scaffold_233:666801..667623 (Clytia hemisphaerica)
GTGTCATTCCATCTTATGTCAGTGCGTTTTGTGAATTTGCTTAGTGCCTC
AAGTTTTATTTCGGGATTCAAGCACATTACACAAAGACAGGTTCACCAAT
CGTTTGTGTTAGGCTTCACCACATTGAAAGGgcgattttgtgaaaaatat
gataaaatgcACTCGTTGGAGTTTTCAGCCTTGAATTTCTCAAATAATGA
AGAAATTGAACACAAACGATATCTGAGGGACAGGATCTCGTCGGGATCTG
CAgggtttttcttcatttttttgtatcCGTACACATACGTGAGACATCAT
CTCGTGGAAAAAACTTTCTTACTAGTTCTTGTAACTCAGTTAAAGCTTCG
TTTTCTGAGTTAAATGAAACGTTCAAAAGATTTACCCCAAGCTCTTGCCT
CATTTTGGTGTTAAAGCCCAACTGGGAGACCATCATGCACCAGTTTAGAT
TTTACTTTCTTCTTCTGAGATGGACTTGGGCTCCACTGCTTCATTTTGGG
TACTGGAGCTTGTTGAAGAAGAGGAGTGTTCATTATTTGATGAAGATGAC
CGTTCACCGGTGcttgtattatttttttcataagatcTTCTCAAGCGTCT
CATCTTATTCTTTACAATAGATTTTTGTGGAGTGGAAAAAGTCTTATCAG
TTCTGGTTTGCAACCTTTTCAACTCTTTCTGTTTTGCTCTATAGTTTTTC
TTTGCCAACCCTAACCCAAACGCTAACAACCCTAAACAACTTCATTCTCG
TTAGATTTTCTGTCTTAAGCTGCCTTTCTGTTTGCAGCATTCTTTCTTTC
GCGATCTTGATCCTTTAACTTTC

Coding sequence (CDS) from alignment at scaffold_233:666801..667623

>TCONS_00053738 ID=TCONS_00053738|Name=TCONS_00053738|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_233:666801..667623 (Clytia hemisphaerica)
GTGTCATTCCATCTTATGTCAGTGCGTTTTGTGAATTTGCTTAGTGCCTC
AAGTTTTATTTCGGGATTCAAGCACATTACACAAAGACAGGTTCACCAAT
CGTTTGTGTTAGGCTTCACCACATTGAAAGGgcgattttgtgaaaaatat
gataaaatgcACTCGTTGGAGTTTTCAGCCTTGAATTTCTCAAATAATGA
AGAAATTGAACACAAACGATATCTGAGGGACAGGATCTCGTCGGGATCTG
CAgggtttttcttcatttttttgtatcCGTACACATACGTGAGACATCAT
CTCGTGGAAAAAACTTTCTTACTAGTTCTTGTAACTCAGTTAAAGCTTCG
TTTTCTGAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033901XLOC_033901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053738-exon-scaffold_233-1491911889:666801..667623TCONS_00053738-exon-scaffold_233-1491911889:666801..667623Clytia hemisphaericaexon
TCONS_00053738-exon-scaffold_233-1510915933:666801..667623TCONS_00053738-exon-scaffold_233-1510915933:666801..667623Clytia hemisphaericaexon
TCONS_00053738-exon-scaffold_233-1575043694:666801..667623TCONS_00053738-exon-scaffold_233-1575043694:666801..667623Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053738-proteinTCONS_00053738-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:666801..667623 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.982283	1.07057	1.95146	1.67628	2.35589	1.16992	1.41145	1.11275	0.77906	0.868027	1.11226	1.1004	0.909104	0.718352	0.446016	0.31647	0.824148	0.489052	0.361437	0.788815	0.674601	0.507424	0.331255	0.562801	1.70959	2.60224	0.447035	0	0.48173	0.512772
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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