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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053739 ID=TCONS_00053739|Name=TCONS_00053739|organism=Clytia hemisphaerica|type=transcript|length=953bp
CATCCATCCAGCTGCCTTTAGTACCTCATCGTCAGACAAATGGTCTGGTG
GTTGGAATATTCGTCTAGCAGCTCGTACGTGCAATTTCTAGCTTTTTCAA
GATAACATTATTGTTGCCCCATACTGTTATATTATAAGTAACGGATGGGA
TAATCGTTGCAAAGTAAAATTTTGACATGATAACATTACCAAGAATAACC
ATACGTgtcaacattttgatttttgtgcgATAGTGcttttcgtttttatc
aatTTGTACTCTCCAGGATAAGGAATCATCAATGGTGGTTCCCAAAACCT
TCTTGTGATCCACAATTTCAAGGTTTCTTCCATTCATGGCGATGTTCTGC
AGTGGACCAATAAATTTACGTTTGGAAATGATCATGGTTTTCGTTTTTCC
AGGATGAATTATCATTCCATTCAAAGCTGACCAATTGTGCAGTTTATTGG
CAGCTGCTtggatttttggtatcaatTCATCAATAGTATCTGCAACACTG
GATTCTGTAGTATCGTAAGCAAACATTTCCGTTTCATCTTGATTCTCATC
CTCAAGAGTGTCGTCTGATTTTGTTGCATCAGGAAGGTCATTCCCATGGT
AGGAATAGCATCTAGGGCCTAAGATGGAGCCCTGTGGAACTCCTTGCTCT
ACTGGTTTGATGGTTGATTTACTATttccaattttaacaaattgtTGCCT
TCGCTTAGATAACTTTTGCACCACTCAAACAAGTCTCCTGAGATTCCAAT
AGCAGTGATTTTCTTTAATAAAGTTTTATGGCAGACGCTGTCAAAGGCTT
TACTAAAATCAATTAGCAAAACTCCAATAAATTTCCCTTTGTCGAGTAAT
GAGAGCCATCTACTACACATTCTTATAAGCATGAGTTCTGGAGATCGTCC
CTTTCTAAAACCCCATTGCTGATTACTTAGGAGTTGATGTTGGTAAACAT
GAG Run BLAST on NCBI protein sequence of TCONS_00053739-protein >TCONS_00053739-protein ID=TCONS_00053739-protein|Name=TCONS_00053739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MFAYDTTESSVADTIDELIPKIQAAANKLHNWSALNGMIIHPGKTKTMII
SKRKFIGPLQNIAMNGRNLEIVDHKKVLGTTIDDSLSWRVQIDKNEKHYR
TKIKMLTRMVILGNVIMSKFYFATIIPSVTYNITVWGNNNVILKKLEIAR
TSC Run BLAST on NCBI transcript from alignment at scaffold_233:670183..671135 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053739 ID=TCONS_00053739|Name=TCONS_00053739|organism=Clytia hemisphaerica|type=transcript|length=953bp|location=Sequence derived from alignment at scaffold_233:670183..671135 (Clytia hemisphaerica)
CTCATGTTTACCAACATCAACTCCTAAGTAATCAGCAATGGGGTTTTAGA
AAGGGACGATCTCCAGAACTCATGCTTATAAGAATGTGTAGTAGATGGCT
CTCATTACTCGACAAAGGGAAATTTATTGGAGTTTTGCTAATTGATTTTA
GTAAAGCCTTTGACAGCGTCTGCCATAAAACTTTATTAAAGAAAATCACT
GCTATTGGAATCTCAGGAGACTTGTTTGAGTGGTGCAAAAGTTATCTAAG
CGAAGGCAacaatttgttaaaattggaaATAGTAAATCAACCATCAAACC
AGTAGAGCAAGGAGTTCCACAGGGCTCCATCTTAGGCCCTAGATGCTATT
CCTACCATGGGAATGACCTTCCTGATGCAACAAAATCAGACGACACTCTT
GAGGATGAGAATCAAGATGAAACGGAAATGTTTGCTTACGATACTACAGA
ATCCAGTGTTGCAGATACTATTGATGAattgataccaaaaatccaAGCAG
CTGCCAATAAACTGCACAATTGGTCAGCTTTGAATGGAATGATAATTCAT
CCTGGAAAAACGAAAACCATGATCATTTCCAAACGTAAATTTATTGGTCC
ACTGCAGAACATCGCCATGAATGGAAGAAACCTTGAAATTGTGGATCACA
AGAAGGTTTTGGGAACCACCATTGATGATTCCTTATCCTGGAGAGTACAA
attgataaaaacgaaaagCACTATcgcacaaaaatcaaaatgttgacACG
TATGGTTATTCTTGGTAATGTTATCATGTCAAAATTTTACTTTGCAACGA
TTATCCCATCCGTTACTTATAATATAACAGTATGGGGCAACAATAATGTT
ATCTTGAAAAAGCTAGAAATTGCACGTACGAGCTGCTAGACGAATATTCC
AACCACCAGACCATTTGTCTGACGATGAGGTACTAAAGGCAGCTGGATGG
ATG Coding sequence (CDS) from alignment at scaffold_233:670183..671135 >TCONS_00053739 ID=TCONS_00053739|Name=TCONS_00053739|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_233:670183..671135 (Clytia hemisphaerica)
ATGTTTGCTTACGATACTACAGAATCCAGTGTTGCAGATACTATTGATGA
attgataccaaaaatccaAGCAGCTGCCAATAAACTGCACAATTGGTCAG
CTTTGAATGGAATGATAATTCATCCTGGAAAAACGAAAACCATGATCATT
TCCAAACGTAAATTTATTGGTCCACTGCAGAACATCGCCATGAATGGAAG
AAACCTTGAAATTGTGGATCACAAGAAGGTTTTGGGAACCACCATTGATG
ATTCCTTATCCTGGAGAGTACAAattgataaaaacgaaaagCACTATcgc
acaaaaatcaaaatgttgacACGTATGGTTATTCTTGGTAATGTTATCAT
GTCAAAATTTTACTTTGCAACGATTATCCCATCCGTTACTTATAATATAA
CAGTATGGGGCAACAATAATGTTATCTTGAAAAAGCTAGAAATTGCACGT
ACGAGCTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053739-exon-scaffold_233-1491911889:670183..671135 | TCONS_00053739-exon-scaffold_233-1491911889:670183..671135 | Clytia hemisphaerica | exon |
| TCONS_00053739-exon-scaffold_233-1510915933:670183..671135 | TCONS_00053739-exon-scaffold_233-1510915933:670183..671135 | Clytia hemisphaerica | exon |
| TCONS_00053739-exon-scaffold_233-1575043694:670183..671135 | TCONS_00053739-exon-scaffold_233-1575043694:670183..671135 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:670183..671135 . |
Blast
The following BLAST results are available for this feature:
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