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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053749 ID=TCONS_00053749|Name=TCONS_00053749|organism=Clytia hemisphaerica|type=transcript|length=2142bp
AGCCGTCTCTGCTTGTTGGGGAAAGAGAATCAAATTACTAATACTTCTAC
CAGAATGAAAATTTATTCTTGAAGCAATTTCATAAACATACAATCCGTAA
GCAACTGAACCACTCAGTAACTACTTATTATGGTGTTAGAAAACAAAGTC
CCTTCCATAGCAATAAAAGAAATTACTATCGTTTAAAGCAGaagtcaaaa
taataaaaatgtaaACCTAATATAAAGCGCAATGATACAGTCATATCAAT
CACTAGacttttttaaaaccaaaaaacaAAGAAGCAACATAGAGCGTGAT
AATCAAAGTTCACGACAGAATATCATCAAGTTCATCAGAAAACCAGTCAT
CATCATAATCACTACTGCTGTGATGCAAAGTAATGTCTGAAAACTTTTTC
ATAGCACCATCTGGATGGATACAACGCTCAGCGTCCAACCGATCCATCTT
AACAGCCTCTTTCATCTGTTCCACCATGTCTTGTTCGTTGTAAGTATATT
GCTCGAGAAGAGCAGAAGCTTTTGGATGCAGCACTTTCCCAATCTCTTGA
TGACATTCACACCCTGTTGAGCAATCGATTTCATCATCCATTTGAATTGG
AATCGAAAGTATTGAGCTGTTCCCAACTGCCTCCATCATCTTGTCTAGAT
AGTCGGTGTTGATTTCCATGTCAGTTGGAGCGTAGGGCACATCAGATGTA
CTCCTGAAACCTGTGATTTGGAGGAAATGGTCTAACACTTGCTCCACTTT
TCGCCTTATGGCAGGGTTCAGGTGGGTTTTATCATAATCTGAAGCAAACT
TTTCAGGACATGAGGTGTCATCTAACATTTTTTGAAGATGGTGAATTATT
GTTTGCCCATCGCTATGCATTTTTGCCAATGGATCTGCTCCTATCTTCAC
AAAAGCTTTAATGAGATCAAGATTCCCGTACTCTGCTGCTAAATGGAAAG
CTGAGCATTTGAGAGCATNGATCAAGATTCCCGTACTCTGCTGCTAAATG
GAAAGCTGAACATTTGAGAGCATCAGGAGCAAGATGGCCAGGAACTTTAT
AAAAATGCATTTCCTTTTTCACTAAGGTAAAACCAGCTTTTGCAAGCATT
TCAATTCCACTTATTGCTCGTTTTACAATGGCTTTAGTTGGTTTCTCCAT
GTGAATTAGTGATGATGCAATACGATGGAACGGACAATGATCAATACTAT
CGATGATGTTATCGGAGTTTAACTTGCTTACTTCATATTCTAAGTCACGA
ATATAGTTTCTTGATTTCAAATCACTAACCATCTCAATAAAGCCTTCTGA
TTTgcttttgatttcaattttttccctGTAGTGTGCAGCTAATTCTTCAT
ggtgaatttcaatttctgtaAGGAGTTCTCGTTTTGGAGCCTCCCCATTT
TTCTTTCGTAAGCTTGACATTACTTCATCAAAAAGTAGCTTATTCAATTT
CTCATACATCTCCGAAAGTTGTAAGCTTTTAGCCAGGGTAATAGAATTAA
CAATTTCTGAAATAACCAATTTGTTATTATCATTCCAGCTTTGgcaacaa
ttttgaaaatagaagaaaattttatcttcCACCTCCGGTAAAAGTTCTGT
CAACTGTATCAAATGACAGTACTGCAATAAATTACACAAAAAACTGATTT
CTTCCTTCCCTGTCCAGCTTACTTGGGATAGATATAAGTATTCTTTGACA
GCGATAAAGACTTCAGGCGAAACACCACACAATGTCATTATATTATTTGC
AACCATCTCGCTCATCTTTGATGCGATAAGAGCATTAAAATACTCATTCG
TCGTAATGATACATCGATGGCAACCGATTTGTAAATCACCAATTTTGACG
TGAAGATCACAATTTGTCTTATCATTGAacaaattcttcattttctccAT
CACAGCATTCTCAGGAGACATTTTCTCTTCCTTTTTGCTCTTTTCCAAGG
GCAATCCTGGCTTAAGGCTCAAAAACAATGGGTTAGATAGCTCTTTAAAG
CTCACATCAATTGGGTCACTAACTTCATCAAGAAGTTCAAACAGTTTCTT
TCTATTAGATGCTTGTACCAATGAAACAGTAAAATCTGCCCATCTCACGA
TGTAAATAGGCATGTTGTTGttgaattttctttggttttatc Run BLAST on NCBI protein sequence of TCONS_00053749-protein >TCONS_00053749-protein ID=TCONS_00053749-protein|Name=TCONS_00053749-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MPIYIVRWADFTVSLVQASNRKKLFELLDEVSDPIDVSFKELSNPLFLSL
KPGLPLEKSKKEEKMSPENAVMEKMKNLFNDKTNCDLHVKIGDLQIGCHR
CIITTNEYFNALIASKMSEMVANNIMTLCGVSPEVFIAVKEYLYLSQVSW
TGKEEISFLCNLLQYCHLIQLTELLPEVEDKIFFYFQNCCQSWNDNNKLV
ISEIVNSITLAKSLQLSEMYEKLNKLLFDEVMSSLRKKNGEAPKRELLTE
IEIHHEELAAHYREKIEIKSKSEGFIEMVSDLKSRNYIRDLEYEVSKLNS
DNIIDSIDHCPFHRIASSLIHMEKPTKAIVKRAISGIEMLAKAGFTLVKK
EMHFYKVPGHLAPDALKCSAFHLAAEYGNLDXCSQMLSFPFSSRVRES Run BLAST on NCBI transcript from alignment at scaffold_233:874960..877101 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053749 ID=TCONS_00053749|Name=TCONS_00053749|organism=Clytia hemisphaerica|type=transcript|length=2142bp|location=Sequence derived from alignment at scaffold_233:874960..877101 (Clytia hemisphaerica)
gataaaaccaaagaaaattcaaCAACAACATGCCTATTTACATCGTGAGA
TGGGCAGATTTTACTGTTTCATTGGTACAAGCATCTAATAGAAAGAAACT
GTTTGAACTTCTTGATGAAGTTAGTGACCCAATTGATGTGAGCTTTAAAG
AGCTATCTAACCCATTGTTTTTGAGCCTTAAGCCAGGATTGCCCTTGGAA
AAGAGCAAAAAGGAAGAGAAAATGTCTCCTGAGAATGCTGTGATggagaa
aatgaagaatttgtTCAATGATAAGACAAATTGTGATCTTCACGTCAAAA
TTGGTGATTTACAAATCGGTTGCCATCGATGTATCATTACGACGAATGAG
TATTTTAATGCTCTTATCGCATCAAAGATGAGCGAGATGGTTGCAAATAA
TATAATGACATTGTGTGGTGTTTCGCCTGAAGTCTTTATCGCTGTCAAAG
AATACTTATATCTATCCCAAGTAAGCTGGACAGGGAAGGAAGAAATCAGT
TTTTTGTGTAATTTATTGCAGTACTGTCATTTGATACAGTTGACAGAACT
TTTACCGGAGGTGgaagataaaattttcttctattttcaaaattgttgcC
AAAGCTGGAATGATAATAACAAATTGGTTATTTCAGAAATTGTTAATTCT
ATTACCCTGGCTAAAAGCTTACAACTTTCGGAGATGTATGAGAAATTGAA
TAAGCTACTTTTTGATGAAGTAATGTCAAGCTTACGAAAGAAAAATGGGG
AGGCTCCAAAACGAGAACTCCTtacagaaattgaaattcaccATGAAGAA
TTAGCTGCACACTACagggaaaaaattgaaatcaaaagcAAATCAGAAGG
CTTTATTGAGATGGTTAGTGATTTGAAATCAAGAAACTATATTCGTGACT
TAGAATATGAAGTAAGCAAGTTAAACTCCGATAACATCATCGATAGTATT
GATCATTGTCCGTTCCATCGTATTGCATCATCACTAATTCACATGGAGAA
ACCAACTAAAGCCATTGTAAAACGAGCAATAAGTGGAATTGAAATGCTTG
CAAAAGCTGGTTTTACCTTAGTGAAAAAGGAAATGCATTTTTATAAAGTT
CCTGGCCATCTTGCTCCTGATGCTCTCAAATGTTCAGCTTTCCATTTAGC
AGCAGAGTACGGGAATCTTGATCNATGCTCTCAAATGCTCAGCTTTCCAT
TTAGCAGCAGAGTACGGGAATCTTGATCTCATTAAAGCTTTTGTGAAGAT
AGGAGCAGATCCATTGGCAAAAATGCATAGCGATGGGCAAACAATAATTC
ACCATCTTCAAAAAATGTTAGATGACACCTCATGTCCTGAAAAGTTTGCT
TCAGATTATGATAAAACCCACCTGAACCCTGCCATAAGGCGAAAAGTGGA
GCAAGTGTTAGACCATTTCCTCCAAATCACAGGTTTCAGGAGTACATCTG
ATGTGCCCTACGCTCCAACTGACATGGAAATCAACACCGACTATCTAGAC
AAGATGATGGAGGCAGTTGGGAACAGCTCAATACTTTCGATTCCAATTCA
AATGGATGATGAAATCGATTGCTCAACAGGGTGTGAATGTCATCAAGAGA
TTGGGAAAGTGCTGCATCCAAAAGCTTCTGCTCTTCTCGAGCAATATACT
TACAACGAACAAGACATGGTGGAACAGATGAAAGAGGCTGTTAAGATGGA
TCGGTTGGACGCTGAGCGTTGTATCCATCCAGATGGTGCTATGAAAAAGT
TTTCAGACATTACTTTGCATCACAGCAGTAGTGATTATGATGATGACTGG
TTTTCTGATGAACTTGATGATATTCTGTCGTGAACTTTGATTATCACGCT
CTATGTTGCTTCTTtgttttttggttttaaaaaagtCTAGTGATTGATAT
GACTGTATCATTGCGCTTTATATTAGGTttacatttttattattttgact
tCTGCTTTAAACGATAGTAATTTCTTTTATTGCTATGGAAGGGACTTTGT
TTTCTAACACCATAATAAGTAGTTACTGAGTGGTTCAGTTGCTTACGGAT
TGTATGTTTATGAAATTGCTTCAAGAATAAATTTTCATTCTGGTAGAAGT
ATTAGTAATTTGATTCTCTTTCCCCAACAAGCAGAGACGGCT Coding sequence (CDS) from alignment at scaffold_233:874960..877101 >TCONS_00053749 ID=TCONS_00053749|Name=TCONS_00053749|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at scaffold_233:874960..877101 (Clytia hemisphaerica)
ATGCCTATTTACATCGTGAGATGGGCAGATTTTACTGTTTCATTGGTACA
AGCATCTAATAGAAAGAAACTGTTTGAACTTCTTGATGAAGTTAGTGACC
CAATTGATGTGAGCTTTAAAGAGCTATCTAACCCATTGTTTTTGAGCCTT
AAGCCAGGATTGCCCTTGGAAAAGAGCAAAAAGGAAGAGAAAATGTCTCC
TGAGAATGCTGTGATggagaaaatgaagaatttgtTCAATGATAAGACAA
ATTGTGATCTTCACGTCAAAATTGGTGATTTACAAATCGGTTGCCATCGA
TGTATCATTACGACGAATGAGTATTTTAATGCTCTTATCGCATCAAAGAT
GAGCGAGATGGTTGCAAATAATATAATGACATTGTGTGGTGTTTCGCCTG
AAGTCTTTATCGCTGTCAAAGAATACTTATATCTATCCCAAGTAAGCTGG
ACAGGGAAGGAAGAAATCAGTTTTTTGTGTAATTTATTGCAGTACTGTCA
TTTGATACAGTTGACAGAACTTTTACCGGAGGTGgaagataaaattttct
tctattttcaaaattgttgcCAAAGCTGGAATGATAATAACAAATTGGTT
ATTTCAGAAATTGTTAATTCTATTACCCTGGCTAAAAGCTTACAACTTTC
GGAGATGTATGAGAAATTGAATAAGCTACTTTTTGATGAAGTAATGTCAA
GCTTACGAAAGAAAAATGGGGAGGCTCCAAAACGAGAACTCCTtacagaa
attgaaattcaccATGAAGAATTAGCTGCACACTACagggaaaaaattga
aatcaaaagcAAATCAGAAGGCTTTATTGAGATGGTTAGTGATTTGAAAT
CAAGAAACTATATTCGTGACTTAGAATATGAAGTAAGCAAGTTAAACTCC
GATAACATCATCGATAGTATTGATCATTGTCCGTTCCATCGTATTGCATC
ATCACTAATTCACATGGAGAAACCAACTAAAGCCATTGTAAAACGAGCAA
TAAGTGGAATTGAAATGCTTGCAAAAGCTGGTTTTACCTTAGTGAAAAAG
GAAATGCATTTTTATAAAGTTCCTGGCCATCTTGCTCCTGATGCTCTCAA
ATGTTCAGCTTTCCATTTAGCAGCAGAGTACGGGAATCTTGATCNATGCT
CTCAAATGCTCAGCTTTCCATTTAGCAGCAGAGTACGGGAATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053749-exon-scaffold_233-1491911889:874960..877101 | TCONS_00053749-exon-scaffold_233-1491911889:874960..877101 | Clytia hemisphaerica | exon |
| TCONS_00053749-exon-scaffold_233-1510915933:874960..877101 | TCONS_00053749-exon-scaffold_233-1510915933:874960..877101 | Clytia hemisphaerica | exon |
| TCONS_00053749-exon-scaffold_233-1575043694:874960..877101 | TCONS_00053749-exon-scaffold_233-1575043694:874960..877101 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:874960..877101 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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