TCONS_00054046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054046
Unique NameTCONS_00054046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054046 ID=TCONS_00054046|Name=TCONS_00054046|organism=Clytia hemisphaerica|type=transcript|length=319bp
GTAGAGAGGTCGCAGATGATCTTAATTGTCCGATAATCATCAATAATTGT
CGCTTCAAAGCATGCAACTCCAGATCGTGTATGATTTGATTGTCGCAACC
CAATTCGTCACCAAGAATCTCCGTATGAGTTATCCCGTCCAACGAGGATT
TcggtttttcataaaaagttttgatgATTTTAGGAATCTTGTCAAATGCT
GGTTTGACATAATTAACGTCTGGTGGTAAAGTGTTATCTCCATTGCCAGC
AGTTTGAATGACTAGATCTAACGTTTCTAGAATGTGATGAATGTACGGTA
TTAGGTTTTCGAATCCATT
Run BLAST on NCBI

protein sequence of TCONS_00054046-protein

>TCONS_00054046-protein ID=TCONS_00054046-protein|Name=TCONS_00054046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
NGFENLIPYIHHILETLDLVIQTAGNGDNTLPPDVNYVKPAFDKIPKIIK
TFYEKPKSSLDGITHTEILGDELGCDNQIIHDLELHALKRQLLMIIGQLR
SSATSL
Run BLAST on NCBI

transcript from alignment at scaffold_238:116401..116719

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054046 ID=TCONS_00054046|Name=TCONS_00054046|organism=Clytia hemisphaerica|type=transcript|length=319bp|location=Sequence derived from alignment at scaffold_238:116401..116719 (Clytia hemisphaerica)
AATGGATTCGAAAACCTAATACCGTACATTCATCACATTCTAGAAACGTT
AGATCTAGTCATTCAAACTGCTGGCAATGGAGATAACACTTTACCACCAG
ACGTTAATTATGTCAAACCAGCATTTGACAAGATTCCTAAAATcatcaaa
actttttatgaaaaaccgAAATCCTCGTTGGACGGGATAACTCATACGGA
GATTCTTGGTGACGAATTGGGTTGCGACAATCAAATCATACACGATCTGG
AGTTGCATGCTTTGAAGCGACAATTATTGATGATTATCGGACAATTAAGA
TCATCTGCGACCTCTCTAC

Coding sequence (CDS) from alignment at scaffold_238:116401..116719

>TCONS_00054046 ID=TCONS_00054046|Name=TCONS_00054046|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_238:116401..116719 (Clytia hemisphaerica)
AATGGATTCGAAAACCTAATACCGTACATTCATCACATTCTAGAAACGTT
AGATCTAGTCATTCAAACTGCTGGCAATGGAGATAACACTTTACCACCAG
ACGTTAATTATGTCAAACCAGCATTTGACAAGATTCCTAAAATcatcaaa
actttttatgaaaaaccgAAATCCTCGTTGGACGGGATAACTCATACGGA
GATTCTTGGTGACGAATTGGGTTGCGACAATCAAATCATACACGATCTGG
AGTTGCATGCTTTGAAGCGACAATTATTGATGATTATCGGACAATTAAGA
TCATCTGCGACCTCTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034115XLOC_034115Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054046-exon-scaffold_238-1491911889:116401..116719TCONS_00054046-exon-scaffold_238-1491911889:116401..116719Clytia hemisphaericaexon
TCONS_00054046-exon-scaffold_238-1510915933:116401..116719TCONS_00054046-exon-scaffold_238-1510915933:116401..116719Clytia hemisphaericaexon
TCONS_00054046-exon-scaffold_238-1575043694:116401..116719TCONS_00054046-exon-scaffold_238-1575043694:116401..116719Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054046-proteinTCONS_00054046-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_238supercontigscaffold_238:116401..116719 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.25736	1.25788	3.65128	1.78611	0	1.3746	0.829198	2.32886	1.08699	0.336603	1.96029	0.64431	0.643414	0.222731	0.915574	1.17906	0.484169	0.248129	2.39962	1.43488	0.623584	0	3.32774	5.04234	6.23219	10.5061	121.158	122.697	1.78964	1.45869
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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