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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054192 ID=TCONS_00054192|Name=TCONS_00054192|organism=Clytia hemisphaerica|type=transcript|length=3005bp
CTGGGAAATATTGCCTGAGTAACACAGAACTTAGTAAAACTATATATTTA
TTTATCTTAACAGACCTTCACTTggaatggaaaaaaaaacattctcaaAT
ATTACGTCAAGATTTAAACGATAAAATGACAGTAGACGAAATTAAGCGCA
ATTTCATTCAGCAAAGGACCCACAACAAAAAGTTTGGACGTTTATTTCTA
AAGTTATATGTCCAAAATGAAAAGATCTCATCAATatcattcaaaaactg
aaatCTGCAACCTGTACAATATGTCCAGAATGTCTACTTTAACAATATTG
TTCAATCAAAAGACAATATTTATGAAGCTTTGCAGTGCTTCTTATGCTCA
CTCCAATGTTTAGCTTGACATTCTTTTCCACAATAACTCACCGCACGACA
ACGTCCACACTTCTTAAATCGTTTCTGCGCACTCTCCGACATCGTCTGCT
CTCCGCCTGACTTGCTACGCGGGCAGCTAGATAGTGCACaggttttgatt
ttctttgtttttttctctttctctcgTTTTTCGCCGTCGTCATCGTCGAT
CTCAACGATTTTCGGCGCCGGTTGTTTCTCCGACTTCGGATTTTCTTTCG
AATGACTTCTTTGGCAATCCGAATTCTTTGCTTTCGGATTCGGTATAATT
GAAATAATAGCTCTTGTTTTTGTTccgtttttgtttttcaacttAGTTAT
TCCAACCTCATTTTTGCATGCACTAAATGTCTCAGCGATTTTCAAACTGG
ACTGTAAAGCTTCTACAAGCTTTTTATCACGAGGACCTTTAACGGCTTGC
TTATCCGATTTCTTCTTAGTATCGCCAAAACCGAGCTTTGCGTATTGCTT
TTTGGTGATAGCATCTTTGAAATCACCTCCATCAgacaaataaaaacaat
tagcTTCATCTTGGTACATCTCATTAACGGTGGAAACTAAAGAACGAGTG
ATATGCTTGGAGACATCAAGCTCGTCATGGTGCATAATATGTGCCATGCA
AGCAACAGCGATGGTGCTATATCGATCAGGCATAGATTTATCTGAGATTG
TAGCGATCAAAACTTCCATCATCTTATCCGCTACCGATTGAGGGATTTTC
GACGTTTCTTTGTTGAGACCGTCCGCTTTTACGTAATCCAACATTTTCGT
CCAGTTTTCGCCGTTGACGTAAACGCACATGTTACGGAAGGTGTCGGGTT
TCAAGGAGCGAAAGAGTTGCATTCGTTCGCCGTTCAGCTCTTCAAGGACA
CCAGATGATTTCATGTGATACAAGATGCATAAATCGTAGTGAATCAGCTT
GACAGTGACGGGCATTAATTGCGAATACAAATTCTTATTGATGTTACGAC
GGTTGCGGTACAAATCATAAATCTCTTCACCCCAAGTCTTGATTGGGACC
AGTCGAAAAAGTTCCAACTTCTTATCGAAACTTGTTTGACAAACGTTGAC
AGTATTGACACGAGATAACAACTTAATGTCTCGTTCATCGTAACTATAAA
ACTTGGAGAGGNATTCTACGGTGTTATTGGTGAAGATGGAAGGGCATTCT
TTCTCTTCCAAAGGACCGATAGCGACTAACAGATTCAAAGCACATGAGAT
CAATTGATCTTTAGTGTCTTTATTACACTTGGACATCGTGGTAGGGAACG
CTTTCAACACACATATTGCATAATCTTGAAACTTCTCTTTAATGATGGAT
TCCTTTTCACTTTCAACTCTTTCGGTAACGATGATGAATGAAAAGATTTT
ATCATCTAGTCCACCCTTCGTGATCATATGTTTCAAACGTGAAAACTCAA
CTTGAATTAATTCCTCTTTACACGGTCGTTGGAAAGAGAATCCGGATTTT
AGTGCGAGATCAAGGAAACGTAGAGTGTGCAAGATAATCTTTTGAGCCAA
CGCTCGACGATAATTCACTTCGTCGTGGACAGCAAATTTCAAGATGAGCG
AATAATCTAACTGATCTAATAGCTTACGAAGTAACTCGAATCTGGAATCT
GTGGTGTCGATAGACATCAGTGCATCAATGGAGAAAAGGAGTGGTGAATG
CATTCGTTGACATGATTTGTTGCTCAGCAAGTCCATCAAGATTGGGATTC
CAGGGTCGAGGAGAAGGAAGAGATCAATCATAACAGGTCTTGTAAGAGAC
AAACGAGTGAATAATGCAATGAGATCGACCGGCTGCGTATCTTTCAATGA
ATACCATTCCTTTTGTGCGACGGCCGTTGCAAAAAGCGGTGAAACGATAC
GGTCGTAGCTAAATTCGTAATCCTCAAGTCTAGCTTTCCCTTGAAGTTCA
TAAAGTTTCTTAAAGATGGGATACATTTTGTTATGATGGAATGAACCATC
TAAATACAAGAACTCATCAACGACAATCATATACGGTCCACAACAAAGTT
GTTTCGTTTTCTCAGTAAAAGCAGAGCTGACAACAGTTAAAAACACTGTG
ATGCTTTCCAGAAATACGTGATCCGGTAATAAGAGTATCCGGTCGAAAAG
CATGAACCAAAAACGCCTGGCGTTGTAAATTTGGTAATGATATTTCTTGG
AGCGTGTGATGCATGTGTATGCCAACTGAACAACCGATGATACATAACGC
TCGTTACGAAGTCCAGCTGTTAACAAGCTAGTTAATAGTTCCACTGTCTC
TTCCGCACTAAAAAGAGCATCCGGATGTACCCCACTGTTATGAATATCTT
TGACATTACTTGAAAAACCTTCACATACATCATCAATAGCGccccaattt
ttcgattttatatTACGGAAATCATCGAAAAAGCATTTTTTCCATCCTCT
GACGTCATCTTCNTTTATATTACGGAAATCATCGAAAAAGCATCTTTTCC
ATCCTCTGACGTCATCTTCGCCATTTGCAAACCAATCATCATCGACGATG
AGGACGTCACCATTCAAACAATGTAAGCATAGAGTTTTCGATAGCTGTTC
TTGCTGTTGGGCTGCCATCTTGTTTAtctattttgtattttctttgtttg
ctAAA Run BLAST on NCBI transcript from alignment at scaffold_242:157810..162353+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054192 ID=TCONS_00054192|Name=TCONS_00054192|organism=Clytia hemisphaerica|type=transcript|length=4544bp|location=Sequence derived from alignment at scaffold_242:157810..162353+ (Clytia hemisphaerica)
CTGGGAAATATTGCCTGAGTAACACAGAACTTAGTAAAACTATATATTTA
TTTATCTTAACAGACCTTCACTTggaatggaaaaaaaaacattctcaaAT
ATTACGTCAAGATTTAAACGATAAAATGACAGTAGACGAAATTAAGCGCA
ATTTCATTCAGCAAAGGACCCACAACAAAAAGTTTGGACGTTTATTTCTA
AAGTTATATGTCCAAAATGAAAAGATCTCATCAATatcattcaaaaactg
aaatCTGCAACCTGTACAATATGTCCAGAATGTCTACTTTAACAATATTG
TTCAATCAAAAGACAATATTTATGAAGCTTTGCAGTGCTTCTTATGCTCA
CTCCAATGTTTAGCTTGACATTCTTTTCCACAATAACTCACCGCACGACA
ACGTCCACACTTCTTAAATCGTTTCTGCGCACTCTCCGACATCGTCTGCT
CTCCGCCTGACTTGCTACGCGGGCAGCTAGATAGTGCACaggttttgatt
ttctttgtttttttctctttctctcgTTTTTCGCCGTCGTCATCGTCGAT
CTCAACGATTTTCGGCGCCGGTTGTTTCTCCGACTTCGGATTTTCTTTCG
AATGACTTCTTTGGCAATCCGAATTCTTTGCTTTCGGATTCGGTATAATT
GAAATAATAGCTCTTGTTTTTGTTccgtttttgtttttcaacttAGTTAT
TCCAACCTCATTTTTGCATGCACTAAATGTCTCAGCGATTTTCAAACTGG
ACTGTAAAGCTTCTACAAGCTTTTTATCACGAGGACCTTTAACGGCTTGC
TTATCCGATTTCTTCTTAGTATCGCCAAAACCGAGCTTTGCGTATTGCTT
TTTGGTGATAGCATCTTTGAAATCACCTCCATCAgacaaataaaaacaat
tagcTTCATCTTGGTACATCTCATTAACGGTGGAAACTAAAGAACGAGTG
ATATGCTTGGAGACATCAAGCTCGTCATGGTGCATAATATGTGCCATGCA
AGCAACAGCGATGGTGCTATATCGATCAGGCATAGATTTATCTGAGATTG
TAGCGATCAAAACTTCCATCATCTTATCCGCTACCGATTGAGGGATTTTC
GACGTTTCTTTGTTGAGACCGTCCGCTTTTACGTAATCCAACATTTTCGT
CCAGTTTTCGCCGTTGACGTAAACGCACATGTTACGGAAGGTGTCGGGTT
TCAAGGAGCGAAAGAGTTGCATTCGTTCGCCGTTCAGCTCTTCAAGGACA
CCAGATGATTTCATGTGATACAAGATGCATAAATCGTAGTGAATCAGCTT
GACAGTGACGGGCATTAATTGCGAATACAAATTCTTATTGATGTTACGAC
GGTTGCGGTACAAATCATAAATCTCTTCACCCCAAGTCTTGATTGGGACC
AGTCGAAAAAGTTCCAACTTCTTATCGAAACTTGTTTGACAAACGTTGAC
AGTATTGACACGAGATAACAACTTAATGTCTCGTTCATCGTAACTATAAA
ACTTGGAGAGGNAATAATGACGGATTAGAGAGGGCTGCACTGGGAAATAT
TGCCTGAGTAACACAGAACTTAGTAAAACTATATATTTATTTATCTTAAC
AGACCTTCACTTggaatggaaaaaaaaacattctcaaATATTACGTCAAG
ATTTAAACGATAAAATGACAGTAGACGAAATTAAGCGCAATTTCATTCAG
CAAAGGACCCACAACAAAAAGTTTGGACGTTTATTTCTAAAGTTATATGT
CCAAAATGAAAAGATCTCATCAATatcattcaaaaactgaaatCTGCAAC
CTGTACAATATGTCCAGAATGTCTACTTTAACAATATTGTTCAATCAAAA
GACAATATTTATGAAGCTTTGCAGTGCTTCTTATGCTCACTCCAATGTTT
AGCTTGACATTCTTTTCCACAATAACTCACCGCACGACAACGTCCACACT
TCTTAAATCGTTTCTGCGCACTCTCCGACATCGTCTGCTCTCCGCCTGAC
TTGCTACGCGGGCAGCTAGATAGTGCACaggttttgattttctttgtttt
tttctctttctctcgTTTTTCGCCGTCGTCATCGTCGATCTCAACGATTT
TCGGCGCCGGTTGTTTCTCCGACTTCGGATTTTCTTTCGAATGACTTCTT
TGGCAATCCGAATTCTTTGCTTTCGGATTCGGTATAATTGAAATAATAGC
TCTTGTTTTTGTTccgtttttgtttttcaacttAGTTATTCCAACCTCAT
TTTTGCATGCACTAAATGTCTCAGCGATTTTCAAACTGGACTGTAAAGCT
TCTACAAGCTTGTTATCACGAGGACCTTTAACGGCTTGCTTATCCGATTT
CTTCTTAGTATCGCCAAAACCGAGCTTTGCGTATTGCTTTTTGGTGAGAG
CATCTTTGAAATCACCTCCATCAgacaaataaaaacaattagcTTCATCT
TGGTACATCTCATTAACGGCAGAAACTAAAGAACGAGTGATATGCTTGGA
GACATCAAGCTCGTCATGGTGCATAATATGTGCCATGCAAGCAACAGCGA
TGGTGCTATATCGATCAGGCATAGATTTATCTGAGATTGTAGCGATCAAA
ACTTCCATCATCTTATCCGCTACCGATTGAGGGATTTTCGACGTTTCTTT
GTTGAGACCGTCCGCTTTTACGTAATCCAACATTTTCGTCCAGTTTTCGC
CGTTGACGTAAACGCACATGTTACGGAAGGTGTCGGGTTTCAAGGAGCGA
AAGAGTTGCATTCGTTCGCCGTTCAGCTCTTCAAGGACACCAGATGATTT
CATGTGATACAAGATGCATAAATCGTAGTGAATCAGCTTGACAGTGACGG
GCATTAATTGCGAATACAAATTCTTATTGATGTTACGACGGTTGCGGTAC
AAATCATAAATCTCTTCACCCCAAGTCTTGATTGGGACCAGTCGAAAAAG
TTCCAACTTCTTATCGAAACTTGTTTGACAAACGTTGACAGTATTGACGC
GAGATAACAACTTAATGTCCTTTTCATCGTAACTATAAAACTTGGAGAGG
ACTTCTACGGTGTTATTGGTGAAGATGGAAGGGCATTCTTTCTCTTCCAA
AGGACCGATAGCGACTAACAGATTCAAAGCACATGAGATCAATTGATCTT
TAGTGTCTTTATTACACTTGGACATCGTGGTAGGGAACGCTTTCAACACA
CATATTGCATAATCTTGAAACTTCTCTTTAATGATGGATTCCTTTTCACT
TTCAACTCTTTCGGTAACGATGATGAATGAAAAGATTTTATCATCTAGTC
CACCCTTCGTGATCATATGTTTCAAACGTGAAAACTCAACTTGAATTAAT
TCCTCTTTACACGGTCGTTGGAAAGAGAATCCGGATTTTAGTGCGAGATC
AAGGAAACGTAGAGTGTGCAAGATAATCTTTTGAGCCAACGCTCGACGAT
AATTCACTTCGTCGTGGACAGCAAATTTCAAGATGAGCGAATAATCTAAC
TGATCTAATAGCTTACGAAGTAACTCGAATCTGGAATCTGTGGTGTCGAT
AGACATCAGTGCATCAATGGAGAAAAGGAGTGGTGAATGCATTCGTTGAC
ATGATTTGTTGCTCAGCAAGTCCATCAAGATTGGGATTCCAGGGTCGAGG
AGAAGGAAGAGATCAATCATAACAGGTCTTGTAAGAGACAAACGAGTGAA
TAATGCAATGAGATCGACCGGCTGCGTATCTTTCAATGAATACCATTCCT
TTTGTGCGACGGCCGTTGCAAAAAGCGGTGAAACGATACGGTCGTAGCTA
AATTCGTAATCCTCAAGTCTAGCTTTCCCTTGAAGTTCATAAAGTTTCTT
AAAGATGGGATACATTTTGTTATGATGGAATGAACCATCTAAATACAAGA
ACTCATCAACGACAATCATATACGGTCCACAACAAAGTTGTTTCGTTTTC
TCAGTAAAAGCAGAGCTGACAACAGTTAAAAACACTGTGATGCTTTCCAG
AAATACGTGATCCGGTAATAAGAGTATCCGGTCGAAAAGCATGAACCAAA
AACGCCTGGCGTTGTAAATTTGGTAATGATATTTCTTGGAGCGTGTGATG
CATGTGTATGCCAACTGAACAACCGATGATACATAACGCTCGTTACGAAG
TCCAGCTGTTAACAAGCTAGTTAATAGTTCCACTGTCTCTTCCGCACTAA
AAAGAGCATCCGGATGTACCCCACTGTTATGAATATCTTTGACATTACTT
GAAAAACCTTCACATACATCATCAATAGCGccccaatttttcgattttat
atTACGGAAATCATCGAAAAAGCATTTTTTCCATCCTCTGACGTCATCTT
CNTTTATATTACGGAAATCATCGAAAAAGCATCTTTTCCATCCTCTGACG
TCATCTTCGCCATTTGCAAACCAATCATCATCGACGATGAGGACGTCACC
ATTCAAACAATGTAAGCATAGAGTTTTCGATAGCTGTTCTTGCTGTTGGG
CTGCCATCTTGTTTAtctattttgtattttctttgtttgctAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054192-exon-scaffold_242-1491911889:157810..159322 | TCONS_00054192-exon-scaffold_242-1491911889:157810..159322 | Clytia hemisphaerica | exon |
| TCONS_00054192-exon-scaffold_242-1510915933:157810..159322 | TCONS_00054192-exon-scaffold_242-1510915933:157810..159322 | Clytia hemisphaerica | exon |
| TCONS_00054192-exon-scaffold_242-1575043694:157810..159322 | TCONS_00054192-exon-scaffold_242-1575043694:157810..159322 | Clytia hemisphaerica | exon |
| TCONS_00054192-exon-scaffold_242-1491911889:160862..162353 | TCONS_00054192-exon-scaffold_242-1491911889:160862..162353 | Clytia hemisphaerica | exon |
| TCONS_00054192-exon-scaffold_242-1510915933:160862..162353 | TCONS_00054192-exon-scaffold_242-1510915933:160862..162353 | Clytia hemisphaerica | exon |
| TCONS_00054192-exon-scaffold_242-1575043694:160862..162353 | TCONS_00054192-exon-scaffold_242-1575043694:160862..162353 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:157810..162353 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002893 | Znf_MYND |
Blast
The following BLAST results are available for this feature:
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