TCONS_00054194 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054194
Unique Name	TCONS_00054194
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3943

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_242:201771..205801+

transcript sequence

>TCONS_00054194 ID=TCONS_00054194|Name=TCONS_00054194|organism=Clytia hemisphaerica|type=transcript|length=3943bp
GCACATAAAGCCATTAGAATGTGGTTTAAATCCTGCGCCACATTCCGTCA
AATTACTTTCAATTGTGATAGAAGTTGTTTCGACTTCAACTCCGTAAGTT
CCATCAACCAAAGCTTGAATAAACATGGCAGCTGTGTCTGATAGGTTCCG
TCTCATCTCTGATGCGTGGACCAGcatttgtttcttgtctttgaaactgg
tTGAAATCTTTGTAAATGATTGAAGATGCATGATAATGGAGTTTGATCTT
TgctcaattttgaatttctgTCCACCTTTATTGAGGTTGTTGGTATTAAA
AGTTTTCAATCCATTAGAAGCTAATATCTTTGCTTGGACGTCCAACGTTT
GGTTCGCTAGTACACCATTGAGGATATTGAATGTTGCTTTGTGACTTTGG
GATGTTCCGAAACGATTCTTGGCAATACAAGAGTATAACCCTTGTTGTCT
AACAGTTGTGGCATTAAATACATCTCCATTTGCACCTTCTATGGTTGTCC
CTGGATCTGTTATATTTTTGTGGTAAACCCATTGATACTCTGGTGAAGGG
CTACCAGTTGCATTGCAAGTGAATCTAGGAATATAGTCTCTAGAGGCTAG
TACCATATGATAAATGTCTGAAGGATGTGTTTGGATCACAGGAAGTTCAT
AGACAAATACAAGAGTTTCATTACTTTCAGTATCACCGATATCTGAAGAG
ACAATACATTTGTAGGACCCTGTTGACTGGAAATCCGTTGTGATTTTGAG
TGTTAAAACTTCATCCTGATTTCTTCTGAATCTCTTCGTCTCGTGACCTG
ACCCATCTTCTCCATCAATGATTGATCCATCTTTTGTCCAAAACATTTTG
ACTGGTGTTACACCTCTTGATGAACaatataaagttttgatttctcCTTT
TGGAATGTCAATTTCAGCGGAAGCTGATTTTCTGGTAATTACTGGAGGCT
CTGAGCAATGATAGACTGAGGTTGACACGAAGTGAATATATCTGTGTATT
TTATCCACTGCTTCTAGTTGTCCTTCTAACGTCTTATCAGCTAACGTTTG
GTTAATAAAGATTTCCATAAAGAGCTGCTTCACATTTGGTAACGAGAGCT
TGTAGTCTTGATATCCAGGTTTCATCATACTTGGCAAATCTTCTAAAATC
TCGAAAGTGTCCTCTAAGCAGTCCTCAAAACTGGTGCAGCGAGTTTTATT
TTGAAGGGAAACAAAGATCTCCATGTTGCCAATCAACTGGGAGGTTACGG
TTGACATGTTTTGCTTGGTCTCGAATTCTTTGATTTCCTCAGAAATACCA
TCTAAAAGCAGTTTTCGAGCTGAATTCTCCATCGAAGATTCTGTGTAATT
GTTTTCGATTCTCTGATTCTTATTTTTGATTGCATCTCTAATAGTCTCAG
TGAGTTCTTTAGTAGTTTCGTTCAAGAAAACCAAGGCTTCATTTAACTTC
AAACACAGACTGTTTGCTCGCTTCACTTTCTCTGGTATATTGATATTAGT
GGATCTGCGAGTACGTTTACTACCTTCATGACAGAGTATCTTCTTCAACA
AACTTTTAGCAGCTTCTTTTATATTAACAACCTTGTCACTCAGTTGGTAC
ACAATCGGCAGAAGTATTTCTTTCCCAGTACTTTTTTCTCGTCCCAGTAC
ATTCAACTCGATGCTGCTTAATATTGGTAAGTTTCCATGGAATGTTATAT
CTTCGATTGTGATGATATTCGAGATGTCTCCACCATATTTAGTAAAAAGT
TTCGAAATACACATCTCTTGCCGAAATAAAGACTCCATATTAAACATAGT
CTGTTCTGTGAATTTAAGTTGTTGTTTATATTTCATGAGCATGTTAGTTC
TTTGCTCGACTTTTCGTTTAAGTTTATCACGGTTTAGTTTGATTTGCTGG
GAAACCATATCTAAATTTTGTATATCATTTTTAAATGTTAGTATGGAGGT
CCACAGATCAGTATAATTTCCTGGTagctttttatttgatttaacATACA
ATTCTCTGTTCTTTTTAcattccaaatttttgaaagtacattctaaattt
tccattttggCGATGCATTTCCTCACATGGCAATTACACTGTCGTGGTAA
ACTAAATCCAGTTTTCACGTTAATCTCCTTGTTAAGACATACTGAATAGG
GTCGTTTGATGGTGGTTGTGTAAGATCTCAGTTCTGTACATGCCTCTTGT
ATAGTAAACGGTGTTGTTATAACGTCATAAGTTTCATCACATGAAGAAAA
CAAACCTCCGAGGAACCCGAGTACAGGACCTAGAAGCGGGAACCCAACCA
TCCAGCCAACAGCAGAACCAATGGCTACTAAAGCACTGGTATGACCCTCT
TGACGACCATGATGTGCTGGATACCCACATGTTCCTGTATAAATTGTGGT
GAATACATATCTTCGGAGATGACATGTCTTTGTAAATTGCTTCAATCTCT
GGACCTTTAGATATTGAACAGATTGTTGGCAATTGATTACCTTGGTTGGT
ATTTGAACTTCTTTCTGGCAGATGTCACATACGGGCATCTGTAAACATTG
CTTCTGACACGATTGCATTTGACATATTGAATCCAAATCTTTCTCGATGA
ACTGCGTCAATGCTGGATGAAGCTTTAAATACTGATCCATTGATAGTTGG
CTCCTTTTCAAATTTAGAGCTGCTTGTCTATATTCGGCTTGGATCTTGTT
GTAATTTTTCTCTGAAAACCGTAGTTTctgttgaaatgttttcaaagcTT
TTTCAGTTTCTTGGTATCTTTTCCTCTTCTCCTCAAGGCTCGACTTTGTA
GCTTTGGATCGTTTGTTCATCCTTGATGCTTTATTCTCAAAAGTATGTTG
AACTTCACTGACGAAGACAGATCTATCATTGGATTGCCCTCGTATTTTGT
TCATAAGTGAACCCCATGTAACTGTTTCTATATTAGATTGTCCTGTGATG
TTAAAGGAGAAACCAGGGTTAAATTCCACGTCCTCGATCTGGTAAGCTGC
TTCTTTCTCCGAGAGTTGGAATGTAACGTCAGTCGTTAGACTATCGTAAA
TACGGACAGTGGCATTTAAATGACCAGTTACTTTGTTTTCGTATTTTTTG
GTCTTCAATGATAATTTGTGATCTTGATCGATTGAAATTCTGCTCGATAG
CTTAACAATAGCGTTGACGGGAGATGCTTCAATGTTGATAAAATCGTTGG
TTGAGGAATCGTCTATTTTGATCAGTAAATCTCTTATGCAAAGATTATGT
AAACAAAACCTGCCCATGAATGATATTGAAgttctttcttcttttaaacC
ACTTGTTGGTGTGTCCATCTCAATATTTAGATTTTGATACCGCTGTAATC
CTCTCACCAATCGATCGCAGAGTGTTTTCAGTTTTACTTCAATTGTGCTG
ATTGCTTTTAGAGAATTTATCAAATCGAACGTAGCCTCTCTAACTTGCTC
AGTACATTCAAAGGCTTTGGTGATATTGTGTGGTAAAGGCGTGTTCAAAA
CTTCAGAAAGTAATTGTAGCTTGTGTTTGAATTTATCATAGTGGTGAGCT
ATGATATCTGTACCATCTCTGATCTTTGATAGTAAGGTTTTGAATCGGTT
TTCAAGAGACTTTGCTGCACGAATCCAAAGCATCAATCTTCGTAAATTCT
TGATGGAACCGGGTTTTGCACTGGTGAGATAGAAACTTTGCTGCAGATTG
ATTTTGCCAGAAGGTTGTAATCTAAGGACTGATGAATCAACCTTAAATTC
GCCACTAGATGAAGCTTCGAggataaatgatgtttttgattctttgtctt
tttttgtGATACTAACATTGCCTTGATTATCTTTGAGTATCATTAGAATT
TGTTTTCCCTGGAGAATGGGAAATCGAGTCTCGGCATTGAGTTTGGAATG
TTTGGTTGAGATTGTAATGGGTGAATTATTTTCTAGAAGCACC

Run BLAST on NCBI

transcript from alignment at scaffold_242:201771..205801+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054194 ID=TCONS_00054194|Name=TCONS_00054194|organism=Clytia hemisphaerica|type=transcript|length=4031bp|location=Sequence derived from alignment at scaffold_242:201771..205801+ (Clytia hemisphaerica)
GCACATAAAGCCATTAGAATGTGGTTTAAATCCTGCGCCACATTCCGTCA
AATTACTTTCAATTGTGATAGAAGTTGTTTCGACTTCAACTCCGTAAGTT
CCATCAACCAAAGCTTGAATAAACATGGCAGCTGTGTCTGATAGGTTCCG
TCTCATCTCTGATGCGTGGACCAGcatttgtttcttgtctttgaaactgg
tTGAAATCTTTGTAAATGATTGAAGATGCATGATAATGGAGTTTGATCTT
TgctcaattttgaatttctgTCCACCTTTATTGAGGTTGTTGGTATTAAA
AGTTTTCAATCCATTAGAAGCTAATATCTTTGCTTGGACGTCCAACGTTT
GGTTCGCTAGTACACCATTGAGGATATTGAATGTTGCTTTGTGACTTTGG
GATGTTCCGAAACGATTCTTGGCAATACAAGAGTATAACCCTTGTTGTCT
AACAGTTGTGGCATTAAATACATCTCCATTTGCACCTTCTATGGTTGTCC
CTGGATCTGTTATATTTTTGTGGTAAACCCATTGATACTCTGGTGAAGGG
CTACCAGTTGCATTGCAAGTGAATCTAGGAATATAGTCTCTAGAGGCTAG
CCGTCAGCTCTACtatgatttgacgtcaaaatcctTGACTTTAATCGTAt
tgacgtcggtatgtttttgaacttcaagcggCTGTNGGTACCATATGATA
AATGTCTGAAGGATGTGTTTGGATCACAGGAAGTTCATAGACAAATACAA
GAGTTTCATTACTTTCAGTATCACCGATATCTGAAGAGACAATACATTTG
TAGGACCCTGTTGACTGGAAATCCGTTGTGATTTTGAGTGTTAAAACTTC
ATCCTGATTTCTTCTGAATCTCTTCGTCTCGTGACCTGACCCATCTTCTC
CATCAATGATTGATCCATCTTTTGTCCAAAACATTTTGACTGGTGTTACA
CCTCTTGATGAACaatataaagttttgatttctcCTTTTGGAATGTCAAT
TTCAGCGGAAGCTGATTTTCTGGTAATTACTGGAGGCTCTGAGCAATGAT
AGACTGAGGTTGACACGAAGTGAATATATCTGTGTATTTTATCCACTGCT
TCTAGTTGTCCTTCTAACGTCTTATCAGCTAACGTTTGGTTAATAAAGAT
TTCCATAAAGAGCTGCTTCACATTTGGTAACGAGAGCTTGTAGTCTTGAT
ATCCAGGTTTCATCATACTTGGCAAATCTTCTAAAATCTCGAAAGTGTCC
TCTAAGCAGTCCTCAAAACTGGTGCAGCGAGTTTTATTTTGAAGGGAAAC
AAAGATCTCCATGTTGCCAATCAACTGGGAGGTTACGGTTGACATGTTTT
GCTTGGTCTCGAATTCTTTGATTTCCTCAGAAATACCATCTAAAAGCAGT
TTTCGAGCTGAATTCTCCATCGAAGATTCTGTGTAATTGTTTTCGATTCT
CTGATTCTTATTTTTGATTGCATCTCTAATAGTCTCAGTGAGTTCTTTAG
TAGTTTCGTTCAAGAAAACCAAGGCTTCATTTAACTTCAAACACAGACTG
TTTGCTCGCTTCACTTTCTCTGGTATATTGATATTAGTGGATCTGCGAGT
ACGTTTACTACCTTCATGACAGAGTATCTTCTTCAACAAACTTTTAGCAG
CTTCTTTTATATTAACAACCTTGTCACTCAGTTGGTACACAATCGGCAGA
AGTATTTCTTTCCCAGTACTTTTTTCTCGTCCCAGTACATTCAACTCGAT
GCTGCTTAATATTGGTAAGTTTCCATGGAATGTTATATCTTCGATTGTGA
TGATATTCGAGATGTCTCCACCATATTTAGTAAAAAGTTTCGAAATACAC
ATCTCTTGCCGAAATAAAGACTCCATATTAAACATAGTCTGTTCTGTGAA
TTTAAGTTGTTGTTTATATTTCATGAGCATGTTAGTTCTTTGCTCGACTT
TTCGTTTAAGTTTATCACGGTTTAGTTTGATTTGCTGGGAAACCATATCT
AAATTTTGTATATCATTTTTAAATGTTAGTATGGAGGTCCACAGATCAGT
ATAATTTCCTGGTagctttttatttgatttaacATACAATTCTCTGTTCT
TTTTAcattccaaatttttgaaagtacattctaaattttccattttggCG
ATGCATTTCCTCACATGGCAATTACACTGTCGTGGTAAACTAAATCCAGT
TTTCACGTTAATCTCCTTGTTAAGACATACTGAATAGGGTCGTTTGATGG
TGGTTGTGTAAGATCTCAGTTCTGTACATGCCTCTTGTATAGTAAACGGT
GTTGTTATAACGTCATAAGTTTCATCACATGAAGAAAACAAACCTCCGAG
GAACCCGAGTACAGGACCTAGAAGCGGGAACCCAACCATCCAGCCAACAG
CAGAACCAATGGCTACTAAAGCACTGGTATGACCCTCTTGACGACCATGA
TGTGCTGGATACCCACATGTTCCTGTATAAATTGTGGTGAATACATATCT
TCGGAGATGACATGTCTTTGTAAATTGCTTCAATCTCTGGACCTTTAGAT
ATTGAACAGATTGTTGGCAATTGATTACCTTGGTTGGTATTTGAACTTCT
TTCTGGCAGATGTCACATACGGGCATCTGTAAACATTGCTTCTGACACGA
TTGCATTTGACATATTGAATCCAAATCTTTCTCGATGAACTGCGTCAATG
CTGGATGAAGCTTTAAATACTGATCCATTGATAGTTGGCTCCTTTTCAAA
TTTAGAGCTGCTTGTCTATATTCGGCTTGGATCTTGTTGTAATTTTTCTC
TGAAAACCGTAGTTTctgttgaaatgttttcaaagcTTTTTCAGTTTCTT
GGTATCTTTTCCTCTTCTCCTCAAGGCTCGACTTTGTAGCTTTGGATCGT
TTGTTCATCCTTGATGCTTTATTCTCAAAAGTATGTTGAACTTCACTGAC
GAAGACAGATCTATCATTGGATTGCCCTCGTATTTTGTTCATAAGTGAAC
CCCATGTAACTGTTTCTATATTAGATTGTCCTGTGATGTTAAAGGAGAAA
CCAGGGTTAAATTCCACGTCCTCGATCTGGTAAGCTGCTTCTTTCTCCGA
GAGTTGGAATGTAACGTCAGTCGTTAGACTATCGTAAATACGGACAGTGG
CATTTAAATGACCAGTTACTTTGTTTTCGTATTTTTTGGTCTTCAATGAT
AATTTGTGATCTTGATCGATTGAAATTCTGCTCGATAGCTTAACAATAGC
GTTGACGGGAGATGCTTCAATGTTGATAAAATCGTTGGTTGAGGAATCGT
CTATTTTGATCAGTAAATCTCTTATGCAAAGATTATGTAAACAAAACCTG
CCCATGAATGATATTGAAgttctttcttcttttaaacCACTTGTTGGTGT
GTCCATCTCAATATTTAGATTTTGATACCGCTGTAATCCTCTCACCAATC
GATCGCAGAGTGTTTTCAGTTTTACTTCAATTGTGCTGATTGCTTTTAGA
GAATTTATCAAATCGAACGTAGCCTCTCTAACTTGCTCAGTACATTCAAA
GGCTTTGGTGATATTGTGTGGTAAAGGCGTGTTCAAAACTTCAGAAAGTA
ATTGTAGCTTGTGTTTGAATTTATCATAGTGGTGAGCTATGATATCTGTA
CCATCTCTGATCTTTGATAGTAAGGTTTTGAATCGGTTTTCAAGAGACTT
TGCTGCACGAATCCAAAGCATCAATCTTCGTAAATTCTTGATGGAACCGG
GTTTTGCACTGGTGAGATAGAAACTTTGCTGCAGATTGATTTTGCCAGAA
GGTTGTAATCTAAGGACTGATGAATCAACCTTAAATTCGCCACTAGATGA
AGCTTCGAggataaatgatgtttttgattctttgtctttttttgtGATAC
TAACATTGCCTTGATTATCTTTGAGTATCATTAGAATTTGTTTTCCCTGG
AGAATGGGAAATCGAGTCTCGGCATTGAGTTTGGAATGTTTGGTTGAGAT
TGTAATGGGTGAATTATTTTCTAGAAGCACC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034183	XLOC_034183	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00054194-exon-scaffold_242-1491911889:201771..202369	TCONS_00054194-exon-scaffold_242-1491911889:201771..202369	Clytia hemisphaerica	exon
TCONS_00054194-exon-scaffold_242-1510915933:201771..202369	TCONS_00054194-exon-scaffold_242-1510915933:201771..202369	Clytia hemisphaerica	exon
TCONS_00054194-exon-scaffold_242-1575043694:201771..202369	TCONS_00054194-exon-scaffold_242-1575043694:201771..202369	Clytia hemisphaerica	exon
TCONS_00054194-exon-scaffold_242-1491911889:202458..205801	TCONS_00054194-exon-scaffold_242-1491911889:202458..205801	Clytia hemisphaerica	exon
TCONS_00054194-exon-scaffold_242-1510915933:202458..205801	TCONS_00054194-exon-scaffold_242-1510915933:202458..205801	Clytia hemisphaerica	exon
TCONS_00054194-exon-scaffold_242-1575043694:202458..205801	TCONS_00054194-exon-scaffold_242-1575043694:202458..205801	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_242	supercontig	scaffold_242:201771..205801 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0220196	0.0935273	0	0.017906	0	0.00393838	0	0.0429397	0.000433658	0.169228	1.14988e-09	0.247	0.111522	0	0	0	0.208525	0.24033	0	0	0	0	0	0.933846	0.814019	0	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013783	Ig-like_fold
IPR007110	Ig-like_dom

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00054194 vs. Swiss-Prot (Human)

BLAST of TCONS_00054194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00054194 (transcript) - C. hemisphaerica