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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054200 ID=TCONS_00054200|Name=TCONS_00054200|organism=Clytia hemisphaerica|type=transcript|length=4698bpRun BLAST on NCBI protein sequence of TCONS_00054200-protein >TCONS_00054200-protein ID=TCONS_00054200-protein|Name=TCONS_00054200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=612bp MRIHTSRVLIFLLFVIWIGGMLYFFTSSSNAPPPLSPEEQARLIALGKLARun BLAST on NCBI transcript from alignment at scaffold_242:352968..382367+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054200 ID=TCONS_00054200|Name=TCONS_00054200|organism=Clytia hemisphaerica|type=transcript|length=29400bp|location=Sequence derived from alignment at scaffold_242:352968..382367+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:352968..382367+ >TCONS_00054200 ID=TCONS_00054200|Name=TCONS_00054200|organism=Clytia hemisphaerica|type=CDS|length=23907bp|location=Sequence derived from alignment at scaffold_242:352968..382367+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00054200 vs. Swiss-Prot (Human)
Match: GALT2 (Polypeptide N-acetylgalactosaminyltransferase 2 OS=Homo sapiens GN=GALNT2 PE=1 SV=1) HSP 1 Score: 565.844 bits (1457), Expect = 0.000e+0 Identity = 266/482 (55.19%), Postives = 345/482 (71.58%), Query Frame = 3
Query: 525 DFDWHGYVQRGALKPGEDKNVRNAYNQEASEKLAWDRPIPDVRDAKCRNKRYDTDLPTTTIIICFHNEGRAALLRTVVSALNRSPDHLLKEIILVDDFSDNPADGKELGSIPKVKVLRNDKREGLIRSRVKGADIAKGDVLTFLDSHCEENEMWLEPLLQAIKDNRKAVVAPIIDVIAHETFEYLSSSSELRGGFGWNLNFKWDFLPPKYLEEHRRDRTAPIKSPAIAGGLFSIDKKWFETLGKYDNQMDVWGGENLEISFRAWQCGGEMHILPCSRVGHVFRERHPYKFPGGSMNVFQKNTRRAAEVWMDDYKRFYFGAVPSARYAIFGDIHERMELRNKLGCKSFKWFLNNVYPELKVPDSDVIKYGSLKNNGENCMDTMGHQINEGVGIFSCHGQGGNQDWSWTKHDQIKHEEICVTAIGSDEHSAVLMRKCDKNXIGSDEHSAVLMRKCDKNDRFQKWRYEEGTRAIVNTGSNLCLDN 1970
DF+ YV ++ G+D RN +NQ S+KL DR IPD R +C+ K++ DLP T+++I FHNE R+ALLRTVVS L +SP HL+KEIILVDD+S++P DG LG I KV+VLRND+REGL+RSRV+GAD A+ VLTFLDSHCE NE WLEPLL+ + ++R VV+PIIDVI + F+Y+ +S++L+GGF WNL FKWD++ P+ + + APIK+P IAGGLF +DK +FE LGKYD MDVWGGENLEISFR WQCGG + I+PCSRVGHVFR++HPY FPGGS VF +NTRRAAEVWMD+YK FY+ AVPSAR +G+I R+ELR KL CK FKW+L NVYPEL+VPD I +G+L+ G NC+DT+GH + VG++ CH GGNQ+W+ TK +KH ++C+T + D L++ ++ C +ND QKW EG + + GSNLCLD+
Sbjct: 80 DFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQ-QGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVV--DRAPGSLIK----------------LQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDS 542 The following BLAST results are available for this feature:
BLAST of TCONS_00054200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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