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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054683 ID=TCONS_00054683|Name=TCONS_00054683|organism=Clytia hemisphaerica|type=transcript|length=1743bp
GTTCAGGGAAAAGTTgcctattttcaatatttttatcattgaaaaaaaag
gtttgtCGTCTTTATCAACGGAGGATATATTGGGAAGCTGAGCATTTGGG
TTTTGCATAGTTCTTCTCCAGAGTAGAGAGATTTGttcattaaaatattc
ttaacaattGCCGTCATTTCGTCATGAAAATGATGAAACAATATGACACA
AACTCGGGGTGGGTATTTGGACATAAAGGGGTACAGGGTGTGTTGCTTGC
TGGTCAGGCTGCCTCTTTTTACCTCCATGAGTGTCGGGCAGGTCGCaaac
accaaaaaaaaaaaaatcactccctTTTGGGTAATTTGGGAAAAGTATGG
aggatttttgcaaaaagagtggaaaatctttagaaaattttggaattttg
gaaTCCCCGTCAGTCGGCAAGGATAGTACCCCTCCCCCGGAGCTGAAGAC
ATTTTCTATGCATCAGATTTcagatattttgttttaaaccaaaattttga
ttcacaaCAATTCACTTTCAGAGTAGTCCATTTAGTAAAAATCGAATTGA
AATTCACACTTTTGGGATCATTTCGACCCCTTGTTTGATACACCAGTCtc
catttcaaatcaaatgtgCAGTCAATCTTTGTCTCGATCTTGTGTTCGAA
TTGCGCTATCATGCTTTTCCCACGTGGCATCTTAAACAATCTAAGCATGC
CCTTTAAGACTAAAACACTTCGGACATGCAATATAATATGTTTATTGAAA
CCACAAAACTTTTTGTCAAGAAAGCGACGTGTTAACAACGACTTTGGCGC
GTCATTCTTCTAGCAGATCTtgagaagaaaaatattattttttcttttcg
tgTTTTTCTAAAGCGTAAAGTTGCCAAACCATGAAAGAAGAATTTTTGCA
CACGCAGGGTCATTTAAGCCGCATGCCGACACTTAATATTCTTTACGAAT
CAACTTAAAGGAAAATCGATTTCctctgattttttttaaacaatactgTA
AAAAGTTTAAAGTCTAAGTCTTGTCGATCAAAGAGAAGTTAAGAGCTACC
CGTCTGAAAATGGGTAGCAAAATTTGATAGAAACCCtggaaattaattaa
aaatatttgttgtgAAAGTTCAGGGGAACCAAGGATTCCAGAACTGAAAA
AAAGTAGCTTGTAATTTGCGTGAATCTTGGGTACCGTCTTTTGTCTGCAA
ATGAGCTTGtcaaaggaaaaagaaaaattatacaatatttttgaaaaact
tacgCCTAAATTTGTCTCTAACGAGTGAATTGCAGAAATAGGGGTGTTTC
CGTACAAAAGATTGCATTGTAGTTATCATGAATTTCGACTTTTGCCCGGA
ATTGCATGAACAAGATGGCCTCAAATCTAGGACCAGATTTTTGGGTTTCT
GTTTAACAtttcaaaattggcaaaacaTTTTGCAGGCTTTGAATGAAAAT
TACCTGAAATCACCAATTCTTTTGTCTcagtttttaaaaagagtcTCCCC
AGcagtaactctgatcacgatatcacgcaattcTTTGTCTTCAAACAAga
tcacgcaaatcagcaaaaaaaaacttgatcACGCATCCCTTTCAAAAAAG
TACCGCATCACGgctcaaacaattttcaaatcacgatcacgttttatCCA
ATGATCACAAAAtcacgagaaaaaaaatttccttatcATGGAATCACGCT
GGAAAATGTCCCTATCACGACATCACGCAAACTGCTTTGAGAG Run BLAST on NCBI protein sequence of TCONS_00054683-protein >TCONS_00054683-protein ID=TCONS_00054683-protein|Name=TCONS_00054683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MSSAPGEGYYPCRLTGIPKFQNFLKIFHSFCKNPPYFSQITQKGVIFFFL
VFATCPTLMEVKRGSLTSKQHTLYPFMSKYPPRVCVILFHHFHDEMTAIV
KNILMNKSLYSGEELCKTQMLSFPIYPPLIKTTNLFFQ Run BLAST on NCBI transcript from alignment at scaffold_243:302967..304709 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054683 ID=TCONS_00054683|Name=TCONS_00054683|organism=Clytia hemisphaerica|type=transcript|length=1743bp|location=Sequence derived from alignment at scaffold_243:302967..304709 (Clytia hemisphaerica)
CTCTCAAAGCAGTTTGCGTGATGTCGTGATAGGGACATTTTCCAGCGTGA
TTCCATgataaggaaattttttttctcgtgaTTTTGTGATCATTGGataa
aacgtgatcgtgatttgaaaattgtttgagcCGTGATGCGGTACTTTTTT
GAAAGGGATGCGTgatcaagtttttttttgctgatttgcgtgatcTTGTT
TGAAGACAAAgaattgcgtgatatcgtgatcagagttactgCTGGGGAga
ctctttttaaaaactgAGACAAAAGAATTGGTGATTTCAGGTAATTTTCA
TTCAAAGCCTGCAAAAtgttttgccaattttgaaaTGTTAAACAGAAACC
CAAAAATCTGGTCCTAGATTTGAGGCCATCTTGTTCATGCAATTCCGGGC
AAAAGTCGAAATTCATGATAACTACAATGCAATCTTTTGTACGGAAACAC
CCCTATTTCTGCAATTCACTCGTTAGAGACAAATTTAGGcgtaagttttt
caaaaatattgtataatttttctttttcctttgaCAAGCTCATTTGCAGA
CAAAAGACGGTACCCAAGATTCACGCAAATTACAAGCTACTTTTTTTCAG
TTCTGGAATCCTTGGTTCCCCTGAACTTTcacaacaaatatttttaatta
atttccaGGGTTTCTATCAAATTTTGCTACCCATTTTCAGACGGGTAGCT
CTTAACTTCTCTTTGATCGACAAGACTTAGACTTTAAACTTTTTAcagta
ttgtttaaaaaaaatcagagGAAATCGATTTTCCTTTAAGTTGATTCGTA
AAGAATATTAAGTGTCGGCATGCGGCTTAAATGACCCTGCGTGTGCAAAA
ATTCTTCTTTCATGGTTTGGCAACTTTACGCTTTAGAAAAAcacgaaaag
aaaaaataatatttttcttctcaAGATCTGCTAGAAGAATGACGCGCCAA
AGTCGTTGTTAACACGTCGCTTTCTTGACAAAAAGTTTTGTGGTTTCAAT
AAACATATTATATTGCATGTCCGAAGTGTTTTAGTCTTAAAGGGCATGCT
TAGATTGTTTAAGATGCCACGTGGGAAAAGCATGATAGCGCAATTCGAAC
ACAAGATCGAGACAAAGATTGACTGcacatttgatttgaaatggaGACTG
GTGTATCAAACAAGGGGTCGAAATGATCCCAAAAGTGTGAATTTCAATTC
GATTTTTACTAAATGGACTACTCTGAAAGTGAATTGttgtgaatcaaaat
tttggtttaaaacaaaatatctgAAATCTGATGCATAGAAAATGTCTTCA
GCTCCGGGGGAGGGGTACTATCCTTGCCGACTGACGGGGAttccaaaatt
ccaaaattttctaaagattttccactctttttgcaaaaatcctCCATACT
TTTCCCAAATTACCCAAAagggagtgatttttttttttttggtgtttGCG
ACCTGCCCGACACTCATGGAGGTAAAAAGAGGCAGCCTGACCAGCAAGCA
ACACACCCTGTACCCCTTTATGTCCAAATACCCACCCCGAGTTTGTGTCA
TATTGTTTCATCATTTTCATGACGAAATGACGGCaattgttaagaatatt
ttaatgaaCAAATCTCTCTACTCTGGAGAAGAACTATGCAAAACCCAAAT
GCTCAGCTTCCCAATATATCCTCCGTTGATAAAGACGacaaacctttttt
ttcaatgataaaaatattgaaaataggcAACTTTTCCCTGAAC Coding sequence (CDS) from alignment at scaffold_243:302967..304709 >TCONS_00054683 ID=TCONS_00054683|Name=TCONS_00054683|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_243:302967..304709 (Clytia hemisphaerica)
ATGTCTTCAGCTCCGGGGGAGGGGTACTATCCTTGCCGACTGACGGGGAt
tccaaaattccaaaattttctaaagattttccactctttttgcaaaaatc
ctCCATACTTTTCCCAAATTACCCAAAagggagtgatttttttttttttg
gtgtttGCGACCTGCCCGACACTCATGGAGGTAAAAAGAGGCAGCCTGAC
CAGCAAGCAACACACCCTGTACCCCTTTATGTCCAAATACCCACCCCGAG
TTTGTGTCATATTGTTTCATCATTTTCATGACGAAATGACGGCaattgtt
aagaatattttaatgaaCAAATCTCTCTACTCTGGAGAAGAACTATGCAA
AACCCAAATGCTCAGCTTCCCAATATATCCTCCGTTGATAAAGACGacaa
accttttttttcaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054683-exon-scaffold_243-1491911889:302967..304709 | TCONS_00054683-exon-scaffold_243-1491911889:302967..304709 | Clytia hemisphaerica | exon |
| TCONS_00054683-exon-scaffold_243-1510915933:302967..304709 | TCONS_00054683-exon-scaffold_243-1510915933:302967..304709 | Clytia hemisphaerica | exon |
| TCONS_00054683-exon-scaffold_243-1575043694:302967..304709 | TCONS_00054683-exon-scaffold_243-1575043694:302967..304709 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:302967..304709 . |
Blast
The following BLAST results are available for this feature:
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