TCONS_00054690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054690
Unique NameTCONS_00054690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054690 ID=TCONS_00054690|Name=TCONS_00054690|organism=Clytia hemisphaerica|type=transcript|length=740bp
CAAGTTCCAACAATCTCAGGTGTATGATAAACGAGGGGTTTTAAACGGTT
GATTGGCATGGATAGACCTGCAGGACTTGGTTACAAAGCTATGAGGCCAG
ATGGAAGTGAAAGCCATACTATTAATTCGTAAACTCTAGACTTCATATAA
AAATGGGAAGCAATCACATTATATTTTCGCATGTAGGTGTTTTATTTTTC
GGATAAATGCTTGACTGTTTATAGCGGACTTAGCTTTGCAGATCTTGGAA
ATACCATGCGGGGTTGCAAATGATGGCAACAAACCGTGCAATGTTGTACT
GCGAAcaataatgataaaaatgataatgataataatGATGGTATCTTACA
TTGGACACAGCAACATTcgaatattttaaaaataaagagaAGTTTTTAGT
ACGAAACGGTTTCTCTGGCTATCATATATGAAGCTTTTAAAACAAGCAGC
TTGTGCAAAAATCCTGACGCATTTTTAATAAGCTAAGTCAAGTGGTAATG
GTGTTTGAATAATCGTCATGTTGATACAATGGTGAAAATGGCTTAATATG
TGGTTTATCACATGCACAAAGCACGTGATAACAAAGATTCTTATGATTCA
AGGCgtgattattttcatttttatttaccaTGTACCTTATCACGAAATTC
GTCTTTTGGCGAAGATAATTTATTTtaacaaaacatattaaaaactGTAG
TCTTTTTCGAGAACGCAATGTTATAATCTGTCAAAGTGAC
Run BLAST on NCBI

transcript from alignment at scaffold_243:438884..439623

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054690 ID=TCONS_00054690|Name=TCONS_00054690|organism=Clytia hemisphaerica|type=transcript|length=740bp|location=Sequence derived from alignment at scaffold_243:438884..439623 (Clytia hemisphaerica)
GTCACTTTGACAGATTATAACATTGCGTTCTCGAAAAAGACTACagtttt
taatatgttttgttaAAATAAATTATCTTCGCCAAAAGACGAATTTCGTG
ATAAGGTACAtggtaaataaaaatgaaaataatcacGCCTTGAATCATAA
GAATCTTTGTTATCACGTGCTTTGTGCATGTGATAAACCACATATTAAGC
CATTTTCACCATTGTATCAACATGACGATTATTCAAACACCATTACCACT
TGACTTAGCTTATTAAAAATGCGTCAGGATTTTTGCACAAGCTGCTTGTT
TTAAAAGCTTCATATATGATAGCCAGAGAAACCGTTTCGTACTAAAAACT
tctctttatttttaaaatattcgAATGTTGCTGTGTCCAATGTAAGATAC
CATCattattatcattatcatttttatcattattgTTCGCAGTACAACAT
TGCACGGTTTGTTGCCATCATTTGCAACCCCGCATGGTATTTCCAAGATC
TGCAAAGCTAAGTCCGCTATAAACAGTCAAGCATTTATCCGAAAAATAAA
ACACCTACATGCGAAAATATAATGTGATTGCTTCCCATTTTTATATGAAG
TCTAGAGTTTACGAATTAATAGTATGGCTTTCACTTCCATCTGGCCTCAT
AGCTTTGTAACCAAGTCCTGCAGGTCTATCCATGCCAATCAACCGTTTAA
AACCCCTCGTTTATCATACACCTGAGATTGTTGGAACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034451XLOC_034451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054690-exon-scaffold_243-1491911889:438884..439623TCONS_00054690-exon-scaffold_243-1491911889:438884..439623Clytia hemisphaericaexon
TCONS_00054690-exon-scaffold_243-1510915933:438884..439623TCONS_00054690-exon-scaffold_243-1510915933:438884..439623Clytia hemisphaericaexon
TCONS_00054690-exon-scaffold_243-1575043694:438884..439623TCONS_00054690-exon-scaffold_243-1575043694:438884..439623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:438884..439623 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46989	1.88944	1.05909	1.55423	1.53172	0.996788	0.858988	1.12584	0.168906	0.767132	0	0.31148	0.133306	0.230732	0.379387	0.732852	0.100313	0.925355	0.142048	0.371606	0.258395	0.378108	1.37892	0.835758	0.143468	0.192063	0	0.195546	0.444944	0.679991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top