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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054692 ID=TCONS_00054692|Name=TCONS_00054692|organism=Clytia hemisphaerica|type=transcript|length=1552bp
TTTTAGCAGTGGATAACCATTCCATTAAACAACTGACCAATTTTATGGTT
AGTTTGCTGCCATCTGGATTTTAGGTTCAAGTTTGTCAAAAGACGTTGCT
CCTACTCCTACATTGGTATCCAGTCAAGAAAAATGTGATGAAATGCATCC
CTTCCACTGTACGTACAGTATGTAATGGAAACGTAATGTACAAAGTATAA
ATAACGGGACACTTAAAATGACGGGGTAAAAACGGGACAcccaaaataaa
gaacaaagagTTAAAAGGATGAACTCAAATTTATGCCCCTTAAAAGATCA
TTTATAAGGCTGTAAAAAAAATCCATACTTTGATCAGCTTCATTCCTCTA
CATCAGAATACACCACAATGTTTCTTGGTGGTtgaaaacgtcgatttttc
atTTCTAGAACGCTTTTTTCTCGACTTAGAACAAACGCCGTACTAAATGC
AGGCGCTACATGTTTGGGTCATCGAGACTAGTTGCAAGTTTGTATAGGGC
gccgtttttgaaaaaaaggtgTCCCGTATTTACTCCGTGAAAATTTTTCT
ATGTTGGGGTAATAACGGAACGCGTCCCGTATTTACCCCAGTCTATATTT
GGTGCGCTGGGGTAATCACAGGACGCCGTTTCACGCATGTCTGAGCCTCG
TTTTGGTAGCCTCGTTTTAGTTCATGTCCCGTTTTTACCCCACTAGGCAG
AAAACTACGAGCCCGGGGGTGTCCCGTTTTTACTCCAAAATccggggtaa
ttacgggacgcATATCCGTGAATATTTTGCGAAAACTAAAAGTCATAAGT
TTAAACCATTAAGAGGGTTGATAGATGACCATTAGAGGGAGTTGCTGGCC
AAAAATCATGATTGTAGCTTTTGAAGTTCCTGAAATATGGAAAGGTTCGT
CGATTTCGTCCCGTTTTTACCCCAGATGACTAATTATCAACCCGTatatt
gaaaaaactttcggTCAGACTGGTTGGATTCAAAATGCTGAGATTAAGCC
TACTTACTGAGCTCACCATAGAAACAATATTTTTGAAGATGTAATTTTTT
CTATGGTCttaaaaatcaaccaaatcagACAAACAATCTCATTTTGGAGA
TTTACTCTTAACAGCTGTATCAgatgtagcctggatatccagcccgtaaa
cttttttttgattttgatatttcttatgtttacggtctggtttacctaga
tcgtctgcattctgatctgaggatgattatgcagatattctgattggttg
ggtccaagcgaatcagagatctgaatggtgaagcgcgtataagaaattat
gcgagccgacttgaagtgtCTGCCTAAGTATTTGGGTGGATCGCGTgggc
gatcagcaaggcgcgtatgctgctttgcaaatctccctgatttttcttct
tcaaagcaaataacaatagaatgcctaattatctcccttgggtgtttgac
cacgcatccaaataaaaataacaataatggtagggaagaagtgggaagat
caaaacatgggaatttttagatgttctggttgttttcttttaaattactt
gc Run BLAST on NCBI transcript from alignment at scaffold_243:454491..456042 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054692 ID=TCONS_00054692|Name=TCONS_00054692|organism=Clytia hemisphaerica|type=transcript|length=1552bp|location=Sequence derived from alignment at scaffold_243:454491..456042 (Clytia hemisphaerica)
gcaagtaatttaaaagaaaacaaccagaacatctaaaaattcccatgttt
tgatcttcccacttcttccctaccattattgttatttttatttggatgcg
tggtcaaacacccaagggagataattaggcattctattgttatttgcttt
gaagaagaaaaatcagggagatttgcaaagcagcatacgcgccttgctga
tcgcccACGCGATCCACCCAAATACTTAGGCAGacacttcaagtcggctc
gcataatttcttatacgcgcttcaccattcagatctctgattcgcttgga
cccaaccaatcagaatatctgcataatcatcctcagatcagaatgcagac
gatctaggtaaaccagaccgtaaacataagaaatatcaaaatcaaaaaaa
agtttacgggctggatatccaggctacatcTGATACAGCTGTTAAGAGTA
AATCTCCAAAATGAGATTGTTTGTctgatttggttgatttttaaGACCAT
AGAAAAAATTACATCTTCAAAAATATTGTTTCTATGGTGAGCTCAGTAAG
TAGGCTTAATCTCAGCATTTTGAATCCAACCAGTCTGAccgaaagttttt
tcaatatACGGGTTGATAATTAGTCATCTGGGGTAAAAACGGGACGAAAT
CGACGAACCTTTCCATATTTCAGGAACTTCAAAAGCTACAATCATGATTT
TTGGCCAGCAACTCCCTCTAATGGTCATCTATCAACCCTCTTAATGGTTT
AAACTTATGACTTTTAGTTTTCGCAAAATATTCACGGATATgcgtcccgt
aattaccccggATTTTGGAGTAAAAACGGGACACCCCCGGGCTCGTAGTT
TTCTGCCTAGTGGGGTAAAAACGGGACATGAACTAAAACGAGGCTACCAA
AACGAGGCTCAGACATGCGTGAAACGGCGTCCTGTGATTACCCCAGCGCA
CCAAATATAGACTGGGGTAAATACGGGACGCGTTCCGTTATTACCCCAAC
ATAGAAAAATTTTCACGGAGTAAATACGGGAcacctttttttcaaaaacg
gcGCCCTATACAAACTTGCAACTAGTCTCGATGACCCAAACATGTAGCGC
CTGCATTTAGTACGGCGTTTGTTCTAAGTCGAGAAAAAAGCGTTCTAGAA
atgaaaaatcgacgttttcaACCACCAAGAAACATTGTGGTGTATTCTGA
TGTAGAGGAATGAAGCTGATCAAAGTATGGATTTTTTTTACAGCCTTATA
AATGATCTTTTAAGGGGCATAAATTTGAGTTCATCCTTTTAActctttgt
tctttattttgggTGTCCCGTTTTTACCCCGTCATTTTAAGTGTCCCGTT
ATTTATACTTTGTACATTACGTTTCCATTACATACTGTACGTACAGTGGA
AGGGATGCATTTCATCACATTTTTCTTGACTGGATACCAATGTAGGAGTA
GGAGCAACGTCTTTTGACAAACTTGAACCTAAAATCCAGATGGCAGCAAA
CTAACCATAAAATTGGTCAGTTGTTTAATGGAATGGTTATCCACTGCTAA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054692-exon-scaffold_243-1491911889:454491..456042 | TCONS_00054692-exon-scaffold_243-1491911889:454491..456042 | Clytia hemisphaerica | exon |
| TCONS_00054692-exon-scaffold_243-1510915933:454491..456042 | TCONS_00054692-exon-scaffold_243-1510915933:454491..456042 | Clytia hemisphaerica | exon |
| TCONS_00054692-exon-scaffold_243-1575043694:454491..456042 | TCONS_00054692-exon-scaffold_243-1575043694:454491..456042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:454491..456042 . |
Blast
The following BLAST results are available for this feature:
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