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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054790 ID=TCONS_00054790|Name=TCONS_00054790|organism=Clytia hemisphaerica|type=transcript|length=1760bp
CTTGGTTGATAAAACTACTATTAAAATAAATTGCTCCCATTATTCATAGA
GATACATTTTAACATAAAATGATGATAAAGATTTGATCTTATTTCAGTTC
TGGAAGACTCTCTTTCCACTTCTCATCAATTCCTTTGGTCGAATACCATT
ATGGTCGAATTGAGAATCAACGTGGATCCATTCCAAGGCTCTGAAAGGTG
ACAACAGCTTACAATAATGGAATCCCGCGGCTGATTTAATGAAATAGTCG
GTCGGTGTTCTCATCATCGGTGCTTGAAGAACGGTCTGTGTTTTGTCGGC
ATTATCTTTGTACTTCAAATAATGCCAGATCCACAGTGGACCAGCATTGT
ATGGACCAAGGTCGTTTCCAATGACTAATTTCTTGCCGTATTTCTGATAT
CTGCGAAGTGCATCAGGATTTGTTTTCGAGAGAGCCCACTTCAATGCTTG
TCTATTGATTTCACCACAACGATTACCAACTTCGTCAGTTTGATGAAAAT
CAGCTTGTTTATTTCCTGCTGCTTTTTGTACAGATTGGCGTGACATGAGT
TTGGCTTTCATTTCAACTGCACCAACTTCATATTTGCCAGTATCCAAAGA
GTTCAAACGGTGATAATAGTTCTCGGTAACGGTGACGCTGTCAAGAATAC
ATTTTCCATTTGTTGAAGCGGATTTACATGTGTTGTTTATTTGAGGTAAA
TGGACAGGGTTGATTGTGTATACACGGTGAAAGTTGTCCTGAGTTATAAT
ATCAGCATTGTAAGCAGTCAAGTTGCCACCCATTATTCGTTGAGCATAAG
GAACCCACTTTGATCCTCTCATACAAGTTTCACGTTTGTCGTTAACCAGT
GTTTTGTTGTAGCAAGGTGGTTTCAAGTTATAGCTTCCTTCAATTTCCAT
GGCTTCAGAAAACGGCTTCATAAAGTCATCTGTGTAATCAAGAATGTCTT
GGATATTTGACCAAGGATTATCGGAACCTTCCAGTTTTGAGATGAAGCTT
GCCATGACATTGCCAGTAATGACATGACCAACTATCTCAGGGACTTCTGG
ATGAAGATCAGTTGAAGTTACAGAGTTTGGTATCATTGAGAAATCCATGA
AACTTGAATGACTCATACCTCTCATTGCAACAACAGGGAACATTCCTGAT
TGacttttaacaatgtttttctttgcatgCCAGTAACCTTCTGCACTTCT
ACTAACTCTCAAAAGTCCATCAAGTTCTCCGTTGAGTGTAAGGGTTGGAA
CATCATAATCGAATTTTGTTTGTCCTGAACCTGTGATTCTTCTTGTGTTT
CTCAACAGAACTGCTCCCATCAATATTTGACctttgacaaagttcgattt
TCCTTTGGCATAGATTTGTGTCATGACACCTCCCAAAGAATGAGCAGCCA
AATAAATCTGATCTCCTGGAAAGTTGTGCTTGGTTTTCAGCATTTTCAAG
GTGTATTGGACATAACGGGTCATCAATATAGGCTCTGGTACATCAAGGAA
GAATTCAGGAAGACCAACCCAGGCTTTGAAGCCTTGAGTAGCAGCTGCTT
TCTGAAATTCTTGAGCGATTGTTCGATACGCTTCAGGTGAGCATCGCATA
CCATGAATCCAAATAACAGCGATTGGTTTTCCACCAGCAGCTGTCGGTGG
TGGTTCAAGGTAGATTGGATCAGCTTTGATCTGATGGACAATAACAGTGA
TTGCCAGAATGCTTGATACAAGGTTGTTGATactcattttcatttatttc
actCGTCTGC Run BLAST on NCBI transcript from alignment at scaffold_245:741894..743945+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054790 ID=TCONS_00054790|Name=TCONS_00054790|organism=Clytia hemisphaerica|type=transcript|length=2052bp|location=Sequence derived from alignment at scaffold_245:741894..743945+ (Clytia hemisphaerica)
CTTGGTTGATAAAACTACTATTAAAATAAATTGCTCCCATTATTCATAGA
GATACATTTTAACATAAAATGATGATAAAGATTTGATCTTATTTCAGTTC
TGGAAGACTCTCTTTCCACTTCTCATCAATTCCTTTGGTCGAATACCATT
ATGGTCGAATTGAGAATCAACGTGGATCCATTCCAAGGCTCTGAAAGGTG
ACAACAGCTTACAATAATGGAATCCCGCGGCTGATTTAATGAAATAGTCG
GTCGGTGTTCTCATCATCGGTGCTTGAAGAACGGTCTGTGTTTTGTCGGC
ATTATCTTTGTACTTCAAATAATGCCAGATCCACAGTGGACCAGCATTGT
ATGGACCAAGGTCGTTTCCAATGACTAATTTCTTGCCGTATTTCTGATAT
CTGCGAAGTGCATCAGGATTTGTTTTCGAGAGAGCCCACTTCAATGCTTG
TCTATTGATTTCACCACAACGATTACCAACTTCGTCAGTTTGATGAAAAT
CAGCTTGTTTATTTCCTGCTGCTTTTTGTACAGATTGGCGTGACATGAGT
TTGGCTTTCATTTCAACTGCACCAACTTCATATTTGCCAGTATCCAAAGA
GTTCAAACGGTGATAATAGTTCTCGGTAACGGTGACGCTGTCAAGAATAC
ATTTTCCATTTGTTGAAGCGGATTTACATGTGTTGTTTATTTGAGGTAAA
TGGACAGGGTTGATTGTGTATACACGGTGAAAGTTGTCCTGAGTTATAAT
ATCAGCATTGTAAGCAGTCAAGTTGCCACCCATTATTCGTTGAGCATAAG
GAACCCACTTTGATCCTCTCATACAAGTTTCACGTTTGTCGTTAACCAGT
GTTTTGTTGTAGCAAGGTGGTTTCAAGTTATAGCTTCCTTCAATTTCCAT
GGCTTCAGAAAACGGCTTCATAAAGTCATCTGTGTAATCAAGAATGTCTT
GGATATTTGACCAAGGATTATCGGAACCTTCCAGTTTTGAGATGAAGCTT
GCCATGACATTGCCAGTAATGACATGACCAACTATCTCAGGGACTTCTGG
ATGAAGATCAGTTGAAGTTACAGAGTTTGGTATCATTGAGAAATCCATGA
AACTTGAATGACTCATACCTCTCATTGCAACAACAGGGAACATTCCTGAT
TGacttttaacaatgtttttctttgcatgCCAGTAACCTTCTGCACTTCT
ACTAACTCTCAAAAGTCCATCAAGTTCTCCGTTGAGTGTAAGGGTTGGAA
CATCATaatcgaatattgttcgtcctGAACCTGTGATTCTTCTTGTGTTT
CTCAACAAATGTGCTCCCATCAATATTTGACctttgacaaagttcgattt
TCCTTTGGCATATATTTGTGTCATGACACCTCCCAAAGAATGAGCAGCCA
AATAAATCTGATCTCCTGGAAAGTTGTGCTTGGTCTTCAGCATTTTCAAG
GTGTATTGGACATAACGGGTCATCAATATAGGCTCTGGTACATCAAGGAA
GAATTCAGGAAGACCAACCCAGGCTTTNAGTAAGAGTTGGAACATCATAA
TCGAATTTTGTTTGTCCTGAACCTGTGATTCTTCTTGTGTTTCTCAACAG
AACTGCTCCCATCAATATTTGACctttgacaaagttcgatttTCCTTTGG
CATAGATTTGTGTCATGACACCTCCCAAAGAATGAGCAGCCAAATAAATC
TGATCTCCTGGAAAGTTGTGCTTGGTTTTCAGCATTTTCAAGGTGTATTG
GACATAACGGGTCATCAATATAGGCTCTGGTACATCAAGGAAGAATTCAG
GAAGACCAACCCAGGCTTTGAAGCCTTGAGTAGCAGCTGCTTTCTGAAAT
TCTTGAGCGATTGTTCGATACGCTTCAGGTGAGCATCGCATACCATGAAT
CCAAATAACAGCGATTGGTTTTCCACCAGCAGCTGTCGGTGGTGGTTCAA
GGTAGATTGGATCAGCTTTGATCTGATGGACAATAACAGTGATTGCCAGA
ATGCTTGATACAAGGTTGTTGATactcattttcatttatttcactCGTCT
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054790-exon-scaffold_245-1491911889:741894..743144 | TCONS_00054790-exon-scaffold_245-1491911889:741894..743144 | Clytia hemisphaerica | exon |
| TCONS_00054790-exon-scaffold_245-1510915933:741894..743144 | TCONS_00054790-exon-scaffold_245-1510915933:741894..743144 | Clytia hemisphaerica | exon |
| TCONS_00054790-exon-scaffold_245-1575043694:741894..743144 | TCONS_00054790-exon-scaffold_245-1575043694:741894..743144 | Clytia hemisphaerica | exon |
| TCONS_00054790-exon-scaffold_245-1491911889:743437..743945 | TCONS_00054790-exon-scaffold_245-1491911889:743437..743945 | Clytia hemisphaerica | exon |
| TCONS_00054790-exon-scaffold_245-1510915933:743437..743945 | TCONS_00054790-exon-scaffold_245-1510915933:743437..743945 | Clytia hemisphaerica | exon |
| TCONS_00054790-exon-scaffold_245-1575043694:743437..743945 | TCONS_00054790-exon-scaffold_245-1575043694:743437..743945 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:741894..743945 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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