|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054792 ID=TCONS_00054792|Name=TCONS_00054792|organism=Clytia hemisphaerica|type=transcript|length=861bp
ccataCTTTTCCCAGGCAAAAAATAAGTCAACCTTGGGAGGCGCAATCCA
GATTTTGTGTGAAGATTAAGCGTTGGACCCTTttcattattcgaatcttt
ctatactTCTTATTAATTTTGAAGGAGAAACTTTCGTAAAATTCTTTCTA
tcattcgaatctctctgtaatcgGAACAAATTAAGAAGTTCCATATCAAC
GCACCCACAAAATACTATTTACAAAATATATACATTGTCATTTTACTTCA
TTCATAAAACCCATTGCCTTACGTCAGCTTATTGTCCTCAACAACTATAT
TACCAGAGTTACATGGGATTTTACGACATTGACAAGTCTCAGACATCAAC
ATTGTCACTGGTATCGAAGGTTTCCCATTTAGacattcaataaaaaaaat
tttctcgtaCTTTTTACCGGGCATACAAGCTGAGCAATAATTCTCATTGA
CCGTCCCTGGctgaacaaaagttttccatagtGATTTGCAAAAACCTGAA
CATTCCATATTGAAAACTGTTTTAGGTTTACAGCCAGGGATTTCGATAAC
GTGTTTCGTGAGGGACGGTTTACATTTTTGCAGCTCCTCTAAATCAGTGT
CTCTCAAAAGCTCTTTTGATGATACGCCTGAGAGTAATGATAAAATCCCA
AGTACAGGTAGAAAGGTATTTAACAATACCATTTCGCTTTGATGTTTCGT
TTTTTCTTCTGTTGTACTGATTATGAGCAAACCAATTTCTTCTTATCttg
tactgttttttttttattttcctgaaaatgaaacggtagaaatattattt
ttacgTCCCCATAaataatacacccccttctcacagacccggtgggggta
aaaataacgga Run BLAST on NCBI transcript from alignment at scaffold_245:843625..844539+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054792 ID=TCONS_00054792|Name=TCONS_00054792|organism=Clytia hemisphaerica|type=transcript|length=915bp|location=Sequence derived from alignment at scaffold_245:843625..844539+ (Clytia hemisphaerica)
ccataCTTTTCCCAGGCAAAAAATAAGTCAACCTTGGGAGGCGCAATCCA
GATTTTGTGTGAAGATTAAGCGTTGGACCCTTttcattattcgaatcttt
ctatactTCTTATTAATTTTGAAGGAGAAACTTTCGTAAAATTCTTTCTA
tcattcgaatctctctgtaatcgGAACAAATTAAGAAGTTCCATATCAAC
GCACCCACAAAATACTATTTACAAAATATATACATTGTCATTTTACTTCA
TTCATAAAACCCATTGCCTTACGTCAGCTTATTGTCCTCAACAACTATAT
TACCAGAGTTACATGGGATTTTACGACATTGACAAGTCTCAGACATCAAC
ATTGTCACTGGTATCGAAGGTTTCCCATTTAGacattcaataaaaaaaat
tttctcgtaCTTTTTACCGGGCATACAAGCTGAGCAATAATTCTCATTGA
CCGTCCCTGGctgaacaaaagttttccatagtGATTTGCAAAAACCTGAA
CATTCCATATTGAAAACTGTTTTAGGTTTACAGCCAGGGATTTCGATAAC
GTGTTTCGTGAGGGACGGTTTACATTTTTGCAGCTCTTCTAAATCNGCGA
TAACGTGTTTGGTGAGGGACGGTTTACATTTTTGCAGCTCCTCTAAATCA
GTGTCTCTCAAAAGCTCTTTTGATGATACGCCTGAGAGTAATGATAAAAT
CCCAAGTACAGGTAGAAAGGTATTTAACAATACCATTTCGCTTTGATGTT
TCGTTTTTTCTTCTGTTGTACTGATTATGAGCAAACCAATTTCTTCTTAT
Cttgtactgttttttttttattttcctgaaaatgaaacggtagaaatatt
atttttacgTCCCCATAaataatacacccccttctcacagacccggtggg
ggtaaaaataacgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054792-exon-scaffold_245-1491911889:843625..844197 | TCONS_00054792-exon-scaffold_245-1491911889:843625..844197 | Clytia hemisphaerica | exon |
| TCONS_00054792-exon-scaffold_245-1510915933:843625..844197 | TCONS_00054792-exon-scaffold_245-1510915933:843625..844197 | Clytia hemisphaerica | exon |
| TCONS_00054792-exon-scaffold_245-1575043694:843625..844197 | TCONS_00054792-exon-scaffold_245-1575043694:843625..844197 | Clytia hemisphaerica | exon |
| TCONS_00054792-exon-scaffold_245-1491911889:844252..844539 | TCONS_00054792-exon-scaffold_245-1491911889:844252..844539 | Clytia hemisphaerica | exon |
| TCONS_00054792-exon-scaffold_245-1510915933:844252..844539 | TCONS_00054792-exon-scaffold_245-1510915933:844252..844539 | Clytia hemisphaerica | exon |
| TCONS_00054792-exon-scaffold_245-1575043694:844252..844539 | TCONS_00054792-exon-scaffold_245-1575043694:844252..844539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:843625..844539 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
